Wall clock time and date at job start Tue Mar 31 2020 19:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.34263 * 126.52443 * 2 1 4 4 C 1.34047 * 108.22468 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.37779 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47215 * 60.02641 * 5 4 3 7 7 C 1.52995 * 109.47046 * 300.02931 * 5 4 3 8 8 N 1.29936 * 109.24727 * 0.24636 * 4 3 2 9 9 C 1.36067 * 108.47620 * 359.61394 * 8 4 3 10 10 C 1.47417 * 126.45088 * 180.15345 * 9 8 4 11 11 O 1.21617 * 120.00087 * 180.26664 * 10 9 8 12 12 N 1.34776 * 119.99829 * 0.27164 * 10 9 8 13 13 C 1.46503 * 119.99876 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47013 * 175.12405 * 13 12 10 15 15 N 1.46494 * 110.01705 * 303.90428 * 14 13 12 16 16 C 1.36941 * 120.00292 * 301.44535 * 15 14 13 17 17 H 1.08000 * 119.99655 * 354.23195 * 16 15 14 18 18 C 1.38807 * 120.00267 * 174.22605 * 16 15 14 19 19 N 1.31622 * 120.00011 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99962 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.46876 * 90.00383 * 20 18 16 22 22 H 1.48501 * 109.47240 * 210.00277 * 20 18 16 23 23 H 1.48501 * 109.47398 * 330.00102 * 20 18 16 24 24 C 1.54269 * 110.03073 * 182.45920 * 14 13 12 25 25 C 1.54887 * 104.19567 * 217.10682 * 24 14 13 26 26 C 1.54888 * 102.75042 * 37.94353 * 25 24 14 27 27 C 1.53870 * 110.03058 * 65.29702 * 14 13 12 28 28 H 1.08998 * 109.47339 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.47513 * 120.01973 * 1 2 3 30 30 H 1.08998 * 109.47048 * 240.01739 * 1 2 3 31 31 H 1.09000 * 109.47689 * 180.02562 * 5 4 3 32 32 H 1.08997 * 109.47509 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.46936 * 59.99933 * 6 5 4 34 34 H 1.09009 * 109.46848 * 300.00407 * 6 5 4 35 35 H 1.09006 * 109.47548 * 179.97438 * 7 5 4 36 36 H 1.09002 * 109.47376 * 299.99805 * 7 5 4 37 37 H 1.08998 * 109.47633 * 59.99658 * 7 5 4 38 38 H 0.97001 * 120.00333 * 359.97438 * 12 10 9 39 39 H 1.08996 * 109.47235 * 295.12797 * 13 12 10 40 40 H 1.09001 * 109.46759 * 55.12662 * 13 12 10 41 41 H 0.97003 * 120.00526 * 121.45263 * 15 14 13 42 42 H 0.97003 * 119.99865 * 179.97438 * 19 18 16 43 43 H 1.08998 * 110.48560 * 335.78914 * 24 14 13 44 44 H 1.09004 * 110.48425 * 98.42797 * 24 14 13 45 45 H 1.09004 * 110.75694 * 279.63056 * 25 24 14 46 46 H 1.08998 * 110.75627 * 156.25941 * 25 24 14 47 47 H 1.08997 * 110.48805 * 203.37631 * 26 25 24 48 48 H 1.09000 * 110.48264 * 80.73353 * 26 25 24 49 49 H 1.09002 * 110.03215 * 238.56874 * 27 14 13 50 50 H 1.09003 * 110.03629 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5787 0.6580 0.0006 5 6 4.7929 1.5507 0.0002 6 6 4.7767 2.4343 1.2492 7 6 4.7765 2.4335 -1.2492 8 7 3.6002 -0.6411 -0.0044 9 6 2.3170 -1.0936 0.0004 10 6 1.8853 -2.5032 0.0005 11 8 0.7002 -2.7763 0.0002 12 7 2.8041 -3.4893 0.0011 13 6 2.3751 -4.8901 0.0018 14 6 3.6001 -5.7986 -0.1203 15 7 4.3646 -5.4511 -1.3206 16 6 3.7681 -5.5057 -2.5520 17 1 2.7648 -5.8933 -2.6493 18 6 4.4529 -5.0628 -3.6753 19 7 3.8793 -5.1149 -4.8588 20 14 6.1885 -4.3929 -3.5072 21 1 7.1639 -5.5026 -3.6559 22 1 6.4309 -3.3760 -4.5619 23 1 6.3504 -3.7674 -2.1701 24 6 3.1586 -7.2755 -0.1828 25 6 4.2458 -8.0313 0.6207 26 6 4.5542 -7.0538 1.7819 27 6 4.4874 -5.6577 1.1290 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3634 -0.5142 -0.8898 30 1 -0.3633 -0.5136 0.8901 31 1 5.6944 0.9380 0.0004 32 1 5.6546 3.0803 1.2487 33 1 4.7883 1.8054 2.1394 34 1 3.8751 3.0471 1.2490 35 1 5.6545 3.0795 -1.2493 36 1 4.7880 1.8041 -2.1391 37 1 3.8750 3.0463 -1.2494 38 1 3.7493 -3.2715 0.0011 39 1 1.8514 -5.1093 0.9322 40 1 1.7070 -5.0658 -0.8413 41 1 5.2934 -5.1823 -1.2432 42 1 4.3578 -4.8050 -5.6437 43 1 2.1819 -7.4017 0.2844 44 1 3.1363 -7.6235 -1.2155 45 1 5.1329 -8.1969 0.0093 46 1 3.8572 -8.9751 1.0032 47 1 5.5503 -7.2401 2.1831 48 1 3.8029 -7.1443 2.5664 49 1 5.4871 -5.3315 0.8420 50 1 4.0455 -4.9418 1.8220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714493166.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:37 Heat of formation + Delta-G solvation = -22.571628 kcal Electronic energy + Delta-G solvation = -30269.489153 eV Core-core repulsion = 26297.889734 eV Total energy + Delta-G solvation = -3971.599419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.39146 -39.35997 -38.12758 -35.95765 -34.66622 -34.10816 -33.28552 -31.92220 -30.92944 -28.53161 -28.31264 -27.50498 -27.08033 -24.80635 -23.47576 -22.86240 -22.34133 -21.00742 -20.26462 -19.58476 -18.57489 -17.53327 -17.43259 -16.89443 -16.10158 -15.75294 -15.25356 -15.06175 -14.63895 -14.51691 -14.44426 -14.23741 -13.73005 -13.58675 -13.34479 -13.00823 -12.94071 -12.81080 -12.63010 -12.54328 -12.49899 -12.12727 -11.89317 -11.77957 -11.59517 -11.32329 -11.24381 -11.09350 -10.81517 -10.77939 -10.65932 -10.63242 -10.42393 -10.33449 -10.19942 -9.94643 -9.71260 -9.51779 -8.89074 -8.76349 -8.35509 -7.27131 -5.74778 -3.11289 1.21563 2.15899 2.48060 3.38076 3.41018 3.45873 3.50695 3.70672 3.87873 4.51211 4.60572 4.73181 4.75107 4.85765 5.01497 5.04459 5.10082 5.14619 5.21735 5.29570 5.35336 5.44144 5.47829 5.50793 5.56176 5.58008 5.63917 5.71593 5.87135 5.87876 5.89353 5.90530 5.92455 6.03270 6.04287 6.11727 6.15645 6.22798 6.25751 6.38581 6.50577 6.52226 6.72131 6.77610 6.96245 7.06733 7.56045 8.01231 8.09291 8.43797 8.65807 9.21398 9.93679 10.12261 11.43241 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009765 B = 0.004106 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.550588 B = 6817.787306 C = 7772.945321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.029 3.971 3 O -0.196 6.196 4 C 0.193 3.807 5 C 0.004 3.996 6 C -0.148 4.148 7 C -0.151 4.151 8 N -0.452 5.452 9 C -0.065 4.065 10 C 0.597 3.403 11 O -0.548 6.548 12 N -0.683 5.683 13 C 0.120 3.880 14 C 0.195 3.805 15 N -0.736 5.736 16 C -0.237 4.237 17 H 0.091 0.909 18 C 0.009 3.991 19 N -0.932 5.932 20 Si 0.879 3.121 21 H -0.286 1.286 22 H -0.294 1.294 23 H -0.275 1.275 24 C -0.130 4.130 25 C -0.118 4.118 26 C -0.120 4.120 27 C -0.129 4.129 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.407 0.593 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.361 0.639 42 H 0.258 0.742 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.401 11.666 14.913 18.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.027 4.027 3 O -0.083 6.083 4 C -0.016 4.016 5 C -0.016 4.016 6 C -0.206 4.206 7 C -0.209 4.209 8 N -0.181 5.181 9 C -0.185 4.185 10 C 0.382 3.618 11 O -0.427 6.427 12 N -0.331 5.331 13 C -0.006 4.006 14 C 0.103 3.897 15 N -0.379 5.379 16 C -0.367 4.367 17 H 0.109 0.891 18 C -0.187 4.187 19 N -0.579 5.579 20 Si 0.709 3.291 21 H -0.213 1.213 22 H -0.220 1.220 23 H -0.201 1.201 24 C -0.170 4.170 25 C -0.156 4.156 26 C -0.158 4.158 27 C -0.167 4.167 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.132 0.868 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.243 0.757 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.195 0.805 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.103 0.897 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.041 11.063 14.695 18.394 hybrid contribution 1.245 0.988 -0.270 1.612 sum 1.204 12.051 14.426 18.835 Atomic orbital electron populations 1.20403 0.82588 1.03362 1.05590 1.23683 0.95040 0.83353 1.00619 1.84260 1.17907 1.36195 1.69976 1.26101 0.84015 0.90174 1.01321 1.19751 0.90017 0.94267 0.97541 1.21888 1.03018 0.99460 0.96252 1.21904 1.02978 0.99544 0.96469 1.70779 1.21878 1.08816 1.16591 1.21646 0.88616 0.95960 1.12302 1.16643 0.85624 0.82458 0.77101 1.90756 1.16318 1.83373 1.52231 1.45515 1.10035 1.05866 1.71658 1.21941 0.98195 0.79651 1.00813 1.20417 0.90080 0.92534 0.86644 1.42902 1.10463 1.82125 1.02376 1.18927 1.00382 1.34883 0.82484 0.89109 1.24637 0.97704 1.00965 0.95389 1.69702 1.37185 1.53065 0.97951 0.86638 0.86432 0.78869 0.77153 1.21297 1.22032 1.20082 1.22795 0.97003 0.95631 1.01580 1.22404 0.99499 0.97189 0.96460 1.22309 1.00620 0.95127 0.97753 1.22472 1.00138 0.97276 0.96824 0.90681 0.88196 0.88436 0.86762 0.90881 0.91940 0.91882 0.90850 0.91657 0.91858 0.75716 0.92700 0.90670 0.80532 0.93194 0.92551 0.89747 0.91504 0.92477 0.92345 0.92071 0.91640 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 9.13 36.00 0.33 -0.42 16 2 C 0.03 0.45 7.44 -35.08 -0.26 0.19 16 3 O -0.20 -2.78 10.73 6.50 0.07 -2.72 16 4 C 0.19 2.75 6.81 -13.08 -0.09 2.66 16 5 C 0.00 0.04 3.39 -91.77 -0.31 -0.28 16 6 C -0.15 -1.14 9.18 37.16 0.34 -0.80 16 7 C -0.15 -1.34 9.17 37.16 0.34 -1.00 16 8 N -0.45 -7.82 11.06 -7.65 -0.08 -7.91 16 9 C -0.06 -1.17 6.99 -83.02 -0.58 -1.75 16 10 C 0.60 11.81 7.81 -12.52 -0.10 11.72 16 11 O -0.55 -11.49 15.60 5.26 0.08 -11.41 16 12 N -0.68 -13.23 5.10 -61.38 -0.31 -13.54 16 13 C 0.12 2.27 3.99 -4.04 -0.02 2.26 16 14 C 0.19 3.55 0.68 -130.70 -0.09 3.46 16 15 N -0.74 -16.35 4.55 -46.20 -0.21 -16.56 16 16 C -0.24 -6.40 8.87 -15.06 -0.13 -6.53 16 17 H 0.09 2.67 7.46 -52.49 -0.39 2.28 16 18 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 19 N -0.93 -29.21 13.97 55.49 0.78 -28.43 16 20 Si 0.88 22.04 27.68 -169.99 -4.71 17.34 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 23 H -0.27 -6.48 6.61 56.52 0.37 -6.11 16 24 C -0.13 -2.23 5.94 -25.07 -0.15 -2.38 16 25 C -0.12 -1.71 6.91 -24.74 -0.17 -1.89 16 26 C -0.12 -1.58 6.83 -25.07 -0.17 -1.75 16 27 C -0.13 -1.96 5.80 -25.61 -0.15 -2.11 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.10 1.27 8.08 -51.93 -0.42 0.86 16 30 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 31 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.41 7.91 7.72 -40.82 -0.32 7.60 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.66 7.50 -51.93 -0.39 1.27 16 41 H 0.36 8.03 5.20 -40.82 -0.21 7.82 16 42 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 43 H 0.06 0.88 7.85 -51.93 -0.41 0.47 16 44 H 0.08 1.69 7.11 -51.93 -0.37 1.32 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.06 1.01 7.44 -51.93 -0.39 0.63 16 50 H 0.06 0.92 7.54 -51.93 -0.39 0.53 16 LS Contribution 402.09 15.07 6.06 6.06 Total: -1.00 -33.21 402.09 -7.99 -41.20 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -8.36 Total: 14.42 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -1.30 Total: 1.54 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: 0.17 Total: -66.44 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.15 Total: -14.13 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.34 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.21 -7.99 -41.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714493166.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.632 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds