Wall clock time and date at job start Tue Mar 31 2020 19:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.34263 * 126.52443 * 2 1 4 4 C 1.34047 * 108.22468 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.37779 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47215 * 60.02641 * 5 4 3 7 7 C 1.52995 * 109.47046 * 300.02931 * 5 4 3 8 8 N 1.29936 * 109.24727 * 0.24636 * 4 3 2 9 9 C 1.36067 * 108.47620 * 359.61394 * 8 4 3 10 10 C 1.47417 * 126.45088 * 180.15345 * 9 8 4 11 11 O 1.21617 * 120.00087 * 180.26664 * 10 9 8 12 12 N 1.34776 * 119.99829 * 0.27164 * 10 9 8 13 13 C 1.46503 * 119.99876 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47013 * 175.12405 * 13 12 10 15 15 N 1.46494 * 110.01705 * 303.90428 * 14 13 12 16 16 C 1.36941 * 120.00292 * 301.44535 * 15 14 13 17 17 H 1.08000 * 119.99655 * 354.23195 * 16 15 14 18 18 C 1.38807 * 120.00267 * 174.22605 * 16 15 14 19 19 N 1.31622 * 120.00011 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99962 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.46876 * 90.00383 * 20 18 16 22 22 H 1.48501 * 109.47240 * 210.00277 * 20 18 16 23 23 H 1.48501 * 109.47398 * 330.00102 * 20 18 16 24 24 C 1.54269 * 110.03073 * 182.45920 * 14 13 12 25 25 C 1.54887 * 104.19567 * 217.10682 * 24 14 13 26 26 C 1.54888 * 102.75042 * 37.94353 * 25 24 14 27 27 C 1.53870 * 110.03058 * 65.29702 * 14 13 12 28 28 H 1.08998 * 109.47339 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.47513 * 120.01973 * 1 2 3 30 30 H 1.08998 * 109.47048 * 240.01739 * 1 2 3 31 31 H 1.09000 * 109.47689 * 180.02562 * 5 4 3 32 32 H 1.08997 * 109.47509 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.46936 * 59.99933 * 6 5 4 34 34 H 1.09009 * 109.46848 * 300.00407 * 6 5 4 35 35 H 1.09006 * 109.47548 * 179.97438 * 7 5 4 36 36 H 1.09002 * 109.47376 * 299.99805 * 7 5 4 37 37 H 1.08998 * 109.47633 * 59.99658 * 7 5 4 38 38 H 0.97001 * 120.00333 * 359.97438 * 12 10 9 39 39 H 1.08996 * 109.47235 * 295.12797 * 13 12 10 40 40 H 1.09001 * 109.46759 * 55.12662 * 13 12 10 41 41 H 0.97003 * 120.00526 * 121.45263 * 15 14 13 42 42 H 0.97003 * 119.99865 * 179.97438 * 19 18 16 43 43 H 1.08998 * 110.48560 * 335.78914 * 24 14 13 44 44 H 1.09004 * 110.48425 * 98.42797 * 24 14 13 45 45 H 1.09004 * 110.75694 * 279.63056 * 25 24 14 46 46 H 1.08998 * 110.75627 * 156.25941 * 25 24 14 47 47 H 1.08997 * 110.48805 * 203.37631 * 26 25 24 48 48 H 1.09000 * 110.48264 * 80.73353 * 26 25 24 49 49 H 1.09002 * 110.03215 * 238.56874 * 27 14 13 50 50 H 1.09003 * 110.03629 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5787 0.6580 0.0006 5 6 4.7929 1.5507 0.0002 6 6 4.7767 2.4343 1.2492 7 6 4.7765 2.4335 -1.2492 8 7 3.6002 -0.6411 -0.0044 9 6 2.3170 -1.0936 0.0004 10 6 1.8853 -2.5032 0.0005 11 8 0.7002 -2.7763 0.0002 12 7 2.8041 -3.4893 0.0011 13 6 2.3751 -4.8901 0.0018 14 6 3.6001 -5.7986 -0.1203 15 7 4.3646 -5.4511 -1.3206 16 6 3.7681 -5.5057 -2.5520 17 1 2.7648 -5.8933 -2.6493 18 6 4.4529 -5.0628 -3.6753 19 7 3.8793 -5.1149 -4.8588 20 14 6.1885 -4.3929 -3.5072 21 1 7.1639 -5.5026 -3.6559 22 1 6.4309 -3.3760 -4.5619 23 1 6.3504 -3.7674 -2.1701 24 6 3.1586 -7.2755 -0.1828 25 6 4.2458 -8.0313 0.6207 26 6 4.5542 -7.0538 1.7819 27 6 4.4874 -5.6577 1.1290 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3634 -0.5142 -0.8898 30 1 -0.3633 -0.5136 0.8901 31 1 5.6944 0.9380 0.0004 32 1 5.6546 3.0803 1.2487 33 1 4.7883 1.8054 2.1394 34 1 3.8751 3.0471 1.2490 35 1 5.6545 3.0795 -1.2493 36 1 4.7880 1.8041 -2.1391 37 1 3.8750 3.0463 -1.2494 38 1 3.7493 -3.2715 0.0011 39 1 1.8514 -5.1093 0.9322 40 1 1.7070 -5.0658 -0.8413 41 1 5.2934 -5.1823 -1.2432 42 1 4.3578 -4.8050 -5.6437 43 1 2.1819 -7.4017 0.2844 44 1 3.1363 -7.6235 -1.2155 45 1 5.1329 -8.1969 0.0093 46 1 3.8572 -8.9751 1.0032 47 1 5.5503 -7.2401 2.1831 48 1 3.8029 -7.1443 2.5664 49 1 5.4871 -5.3315 0.8420 50 1 4.0455 -4.9418 1.8220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714493166.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:35 Heat of formation + Delta-G solvation = -46.909779 kcal Electronic energy + Delta-G solvation = -30270.544534 eV Core-core repulsion = 26297.889734 eV Total energy + Delta-G solvation = -3972.654800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.57258 -40.88413 -39.60415 -36.79368 -35.90482 -35.61738 -35.16279 -33.00198 -32.88549 -30.10941 -29.60612 -28.27567 -28.13748 -26.30076 -25.03594 -24.35628 -23.43672 -22.25417 -21.49147 -20.95995 -20.10146 -19.52905 -18.80133 -18.07455 -17.30759 -17.13478 -16.66402 -16.32383 -16.19726 -15.94610 -15.87266 -15.41229 -14.99866 -14.83702 -14.55829 -14.40309 -14.37925 -14.20115 -13.84281 -13.72245 -13.50560 -13.47932 -13.07857 -13.04706 -12.65069 -12.51285 -12.49444 -12.32654 -12.17591 -12.02357 -11.98323 -11.95112 -11.89609 -11.88578 -11.63406 -11.46250 -11.36222 -11.24228 -10.91591 -10.15233 -9.77871 -9.29754 -7.99368 -5.32362 -0.02198 0.91182 1.34589 1.36971 1.38121 1.44411 2.08145 2.27369 2.48650 2.75115 3.29943 3.49990 3.51503 3.66871 3.74370 3.87709 3.90350 4.01923 4.04384 4.11655 4.20512 4.36914 4.41269 4.52435 4.53287 4.62548 4.67024 4.72901 4.76167 4.81190 4.84026 4.87278 4.90704 4.95343 4.99767 5.03267 5.08296 5.09122 5.16794 5.24977 5.25675 5.28787 5.35232 5.41563 5.52269 5.61272 5.84131 6.24244 6.30097 6.59868 7.10518 7.11723 7.85778 8.04205 9.22463 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009765 B = 0.004106 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.550588 B = 6817.787306 C = 7772.945321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.040 3.960 3 O -0.189 6.189 4 C 0.202 3.798 5 C 0.001 3.999 6 C -0.142 4.142 7 C -0.148 4.148 8 N -0.485 5.485 9 C -0.105 4.105 10 C 0.591 3.409 11 O -0.569 6.569 12 N -0.684 5.684 13 C 0.126 3.874 14 C 0.188 3.812 15 N -0.734 5.734 16 C -0.204 4.204 17 H 0.053 0.947 18 C -0.064 4.064 19 N -0.987 5.987 20 Si 0.946 3.054 21 H -0.279 1.279 22 H -0.306 1.306 23 H -0.249 1.249 24 C -0.131 4.131 25 C -0.113 4.113 26 C -0.110 4.110 27 C -0.123 4.123 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.043 0.957 37 H 0.066 0.934 38 H 0.407 0.593 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.365 0.635 42 H 0.253 0.747 43 H 0.071 0.929 44 H 0.045 0.955 45 H 0.054 0.946 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.066 0.934 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.113 13.274 18.008 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.017 4.017 3 O -0.077 6.077 4 C -0.008 4.008 5 C -0.019 4.019 6 C -0.199 4.199 7 C -0.206 4.206 8 N -0.214 5.214 9 C -0.223 4.223 10 C 0.377 3.623 11 O -0.450 6.450 12 N -0.332 5.332 13 C 0.001 3.999 14 C 0.098 3.902 15 N -0.378 5.378 16 C -0.335 4.335 17 H 0.071 0.929 18 C -0.255 4.255 19 N -0.638 5.638 20 Si 0.774 3.226 21 H -0.205 1.205 22 H -0.234 1.234 23 H -0.174 1.174 24 C -0.170 4.170 25 C -0.150 4.150 26 C -0.147 4.147 27 C -0.161 4.161 28 H 0.128 0.872 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.135 0.865 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.243 0.757 39 H 0.095 0.905 40 H 0.051 0.949 41 H 0.199 0.801 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.099 0.901 49 H 0.085 0.915 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.681 12.647 17.866 21.954 hybrid contribution 0.592 0.495 -1.197 1.424 sum 2.273 13.142 16.669 21.348 Atomic orbital electron populations 1.20535 0.80461 1.05572 1.05228 1.24192 0.96223 0.82882 0.98363 1.84300 1.17959 1.35587 1.69806 1.27063 0.84909 0.89971 0.98810 1.20092 0.88059 0.94280 0.99445 1.21874 1.04463 0.99152 0.94437 1.21911 1.04588 0.99295 0.94762 1.70726 1.21742 1.10405 1.18496 1.21528 0.89845 0.95551 1.15413 1.16981 0.85416 0.83436 0.76477 1.90723 1.17024 1.83990 1.53269 1.45531 1.10003 1.05888 1.71743 1.21867 0.98011 0.79975 1.00069 1.20738 0.90138 0.92742 0.86620 1.42869 1.10814 1.82033 1.02045 1.18769 0.98543 1.31816 0.84380 0.92907 1.25397 1.02252 1.02793 0.95068 1.69895 1.39217 1.55807 0.98878 0.85534 0.81252 0.78007 0.77772 1.20494 1.23377 1.17371 1.22744 0.99168 0.95043 1.00092 1.22378 0.97813 0.98367 0.96462 1.22296 1.02617 0.92568 0.97253 1.22430 0.99231 0.99310 0.95147 0.87193 0.89214 0.87911 0.86508 0.88154 0.92475 0.91664 0.87943 0.93751 0.91533 0.75696 0.90514 0.94854 0.80117 0.93833 0.91013 0.93623 0.92749 0.90137 0.90181 0.90056 0.91532 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.42 9.13 71.23 0.65 -0.77 16 2 C 0.04 1.21 7.44 25.19 0.19 1.40 16 3 O -0.19 -5.13 10.73 0.35 0.00 -5.12 16 4 C 0.20 5.55 6.81 88.39 0.60 6.15 16 5 C 0.00 0.01 3.39 -11.54 -0.04 -0.03 16 6 C -0.14 -1.75 9.18 71.98 0.66 -1.09 16 7 C -0.15 -2.29 9.17 71.98 0.66 -1.63 16 8 N -0.48 -16.70 11.06 -293.04 -3.24 -19.94 16 9 C -0.10 -3.80 6.99 40.41 0.28 -3.52 16 10 C 0.59 23.97 7.81 86.66 0.68 24.64 16 11 O -0.57 -24.63 15.60 -4.09 -0.06 -24.69 16 12 N -0.68 -26.93 5.10 -466.36 -2.38 -29.30 16 13 C 0.13 4.89 3.99 86.38 0.34 5.23 16 14 C 0.19 6.77 0.68 4.33 0.00 6.77 16 15 N -0.73 -32.87 4.55 -300.08 -1.37 -34.23 16 16 C -0.20 -11.46 8.87 84.03 0.75 -10.71 16 17 H 0.05 3.34 7.46 -2.91 -0.02 3.32 16 18 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 19 N -0.99 -64.85 13.97 21.65 0.30 -64.55 16 20 Si 0.95 46.40 27.68 68.60 1.90 48.30 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.31 -15.60 7.11 99.48 0.71 -14.89 16 23 H -0.25 -11.00 6.61 99.48 0.66 -10.35 16 24 C -0.13 -4.45 5.94 31.67 0.19 -4.26 16 25 C -0.11 -3.01 6.91 31.88 0.22 -2.79 16 26 C -0.11 -2.46 6.83 31.67 0.22 -2.24 16 27 C -0.12 -3.42 5.80 31.32 0.18 -3.24 16 28 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.09 2.29 8.08 -2.38 -0.02 2.27 16 30 H 0.10 2.28 8.08 -2.39 -0.02 2.26 16 31 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.41 15.87 7.72 -92.71 -0.72 15.16 16 39 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.03 1.56 7.50 -2.39 -0.02 1.54 16 41 H 0.36 15.84 5.20 -92.71 -0.48 15.35 16 42 H 0.25 16.00 8.31 -92.71 -0.77 15.23 16 43 H 0.07 2.19 7.85 -2.39 -0.02 2.18 16 44 H 0.04 1.90 7.11 -2.39 -0.02 1.88 16 45 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.07 1.86 7.44 -2.39 -0.02 1.85 16 50 H 0.08 1.96 7.54 -2.39 -0.02 1.94 16 Total: -1.00 -76.88 402.09 0.91 -75.98 By element: Atomic # 1 Polarization: 43.31 SS G_CDS: -0.30 Total: 43.01 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 6.05 Total: 10.55 kcal Atomic # 7 Polarization: -141.34 SS G_CDS: -6.68 Total: -148.02 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.06 Total: -29.81 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.90 Total: 48.30 kcal Total: -76.88 0.91 -75.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714493166.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.067 kcal (2) G-P(sol) polarization free energy of solvation -76.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds