Wall clock time and date at job start Tue Mar 31 2020 20:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33689 * 126.27410 * 2 1 4 4 C 1.30620 * 108.99258 * 180.25619 * 3 2 1 5 5 C 1.50706 * 125.42052 * 179.78370 * 4 3 2 6 6 C 1.52999 * 109.47131 * 299.97395 * 5 4 3 7 7 C 1.53002 * 109.46984 * 59.97457 * 5 4 3 8 8 O 1.33659 * 109.15573 * 359.76513 * 4 3 2 9 9 C 1.35343 * 107.68592 * 359.97438 * 8 4 3 10 10 C 1.46722 * 126.64377 * 179.97438 * 9 8 4 11 11 O 1.21687 * 119.99785 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00124 * 0.02585 * 10 9 8 13 13 C 1.47022 * 125.64738 * 0.02562 * 12 10 9 14 14 C 1.54323 * 107.26849 * 181.01097 * 13 12 10 15 15 C 1.55152 * 102.94586 * 22.19524 * 14 13 12 16 16 H 1.08999 * 111.00753 * 82.60510 * 15 14 13 17 17 C 1.53004 * 111.00681 * 206.42534 * 15 14 13 18 18 H 1.08997 * 109.46966 * 59.26734 * 17 15 14 19 19 C 1.52996 * 109.47076 * 179.26934 * 17 15 14 20 20 N 1.46503 * 109.46770 * 299.27001 * 17 15 14 21 21 C 1.36936 * 119.99977 * 155.00308 * 20 17 15 22 22 H 1.08003 * 119.99946 * 359.97438 * 21 20 17 23 23 C 1.38815 * 119.99728 * 180.02562 * 21 20 17 24 24 N 1.31622 * 119.99353 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00223 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46708 * 90.00373 * 25 23 21 27 27 H 1.48498 * 109.46878 * 210.00291 * 25 23 21 28 28 H 1.48499 * 109.47309 * 330.00358 * 25 23 21 29 29 C 1.47421 * 125.64933 * 179.97438 * 12 10 9 30 30 H 1.09005 * 109.47002 * 270.14112 * 1 2 3 31 31 H 1.08995 * 109.46856 * 30.13975 * 1 2 3 32 32 H 1.08997 * 109.47278 * 150.14296 * 1 2 3 33 33 H 1.08997 * 109.46747 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.47041 * 59.99882 * 6 5 4 35 35 H 1.08996 * 109.47125 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.47539 * 300.00293 * 6 5 4 37 37 H 1.08995 * 109.46688 * 60.00219 * 7 5 4 38 38 H 1.09000 * 109.46880 * 179.97438 * 7 5 4 39 39 H 1.08991 * 109.47012 * 300.00097 * 7 5 4 40 40 H 1.09004 * 109.88328 * 61.60058 * 13 12 10 41 41 H 1.08996 * 110.01406 * 300.50394 * 13 12 10 42 42 H 1.08998 * 110.72157 * 263.82561 * 14 13 12 43 43 H 1.09001 * 110.71788 * 140.56026 * 14 13 12 44 44 H 1.09004 * 109.46959 * 174.72724 * 19 17 15 45 45 H 1.09001 * 109.46991 * 54.73059 * 19 17 15 46 46 H 1.08993 * 109.47269 * 294.72633 * 19 17 15 47 47 H 0.97007 * 120.00229 * 334.99662 * 20 17 15 48 48 H 0.97002 * 119.99567 * 179.97438 * 24 23 21 49 49 H 1.09009 * 110.36662 * 37.08151 * 29 12 10 50 50 H 1.09001 * 110.37194 * 274.76283 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5453 0.6898 -0.0055 5 6 4.7441 1.6030 -0.0121 6 6 4.7072 2.4841 -1.2623 7 6 4.7183 2.4874 1.2362 8 8 3.5890 -0.6461 -0.0040 9 6 2.3137 -1.0992 0.0033 10 6 1.8827 -2.5017 0.0068 11 8 0.6966 -2.7737 0.0130 12 7 2.8004 -3.4887 0.0032 13 6 4.2588 -3.3027 -0.0037 14 6 4.8995 -4.7064 -0.0317 15 6 3.7662 -5.5943 -0.6102 16 1 3.7434 -5.5389 -1.6985 17 6 3.9109 -7.0433 -0.1406 18 1 3.8749 -7.0776 0.9483 19 6 2.7678 -7.8822 -0.7153 20 7 5.1924 -7.5811 -0.6041 21 6 5.7858 -8.6140 0.0713 22 1 5.3094 -9.0319 0.9458 23 6 7.0003 -9.1233 -0.3677 24 7 7.5710 -10.1158 0.2818 25 14 7.8247 -8.4001 -1.8799 26 1 8.7212 -7.2890 -1.4711 27 1 8.6200 -9.4529 -2.5612 28 1 6.7882 -7.8834 -2.8093 29 6 2.5081 -4.9337 0.0066 30 1 -0.3633 0.0025 1.0277 31 1 -0.3633 0.8887 -0.5160 32 1 -0.3634 -0.8912 -0.5116 33 1 5.6558 1.0056 -0.0153 34 1 3.7954 3.0815 -1.2590 35 1 5.5740 3.1449 -1.2668 36 1 4.7255 1.8541 -2.1516 37 1 4.7446 1.8596 2.1268 38 1 5.5856 3.1476 1.2317 39 1 3.8066 3.0847 1.2394 40 1 4.5690 -2.7716 0.8962 41 1 4.5589 -2.7405 -0.8879 42 1 5.1663 -5.0287 0.9747 43 1 5.7714 -4.7193 -0.6857 44 1 2.9218 -8.9304 -0.4588 45 1 2.7465 -7.7728 -1.7996 46 1 1.8209 -7.5411 -0.2970 47 1 5.6204 -7.2057 -1.3894 48 1 8.4194 -10.4719 -0.0251 49 1 1.6305 -5.1447 -0.6046 50 1 2.3551 -5.2875 1.0262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716971447.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:17 Heat of formation + Delta-G solvation = -11.560405 kcal Electronic energy + Delta-G solvation = -29498.275870 eV Core-core repulsion = 25527.153933 eV Total energy + Delta-G solvation = -3971.121936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.73769 -40.09615 -38.04129 -36.31414 -35.67280 -35.18291 -32.52015 -31.35340 -30.77145 -29.74887 -28.41131 -27.69523 -27.43811 -25.11270 -24.10559 -22.93515 -21.95357 -21.35609 -20.75670 -20.02177 -19.92230 -17.91187 -17.49876 -17.23326 -16.62243 -16.29824 -15.69181 -15.03926 -14.98421 -14.64396 -14.30136 -13.86074 -13.77999 -13.64346 -13.46349 -13.37306 -13.22602 -12.90850 -12.68711 -12.66923 -12.57501 -12.51902 -12.30000 -12.19597 -11.94347 -11.81777 -11.64209 -11.56102 -11.21396 -11.04122 -11.01397 -10.86182 -10.65087 -10.55920 -10.34521 -10.25064 -9.97961 -9.62111 -9.17933 -8.98220 -8.72637 -7.32102 -5.80601 -3.16348 0.56335 2.06153 2.11292 2.79413 2.88330 3.33032 3.35488 3.41855 3.49095 4.18105 4.33524 4.49478 4.50978 4.54871 4.57145 4.63594 4.75377 4.93733 5.08363 5.15039 5.16794 5.18939 5.31891 5.33059 5.37454 5.42178 5.43259 5.45210 5.55134 5.58966 5.60033 5.66278 5.71672 5.75564 5.78139 5.79991 5.89202 6.03081 6.06478 6.08760 6.17652 6.28543 6.38402 6.45664 6.73984 6.97575 7.18091 7.34843 7.80627 7.95369 8.38330 9.16518 9.88932 10.08603 11.37790 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014770 B = 0.002727 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.263459 B =10265.912500 C =11687.938117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.080 3.920 3 N -0.483 5.483 4 C 0.222 3.778 5 C -0.001 4.001 6 C -0.144 4.144 7 C -0.144 4.144 8 O -0.182 6.182 9 C -0.113 4.113 10 C 0.620 3.380 11 O -0.519 6.519 12 N -0.605 5.605 13 C 0.099 3.901 14 C -0.118 4.118 15 C -0.107 4.107 16 H 0.081 0.919 17 C 0.191 3.809 18 H 0.059 0.941 19 C -0.169 4.169 20 N -0.746 5.746 21 C -0.241 4.241 22 H 0.090 0.910 23 C 0.005 3.995 24 N -0.934 5.934 25 Si 0.883 3.117 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.277 1.277 29 C 0.116 3.884 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.044 0.956 46 H 0.041 0.959 47 H 0.360 0.640 48 H 0.259 0.741 49 H 0.082 0.918 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.276 26.019 -1.085 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.045 4.045 3 N -0.213 5.213 4 C 0.016 3.984 5 C -0.020 4.020 6 C -0.202 4.202 7 C -0.202 4.202 8 O -0.069 6.069 9 C -0.168 4.168 10 C 0.408 3.592 11 O -0.397 6.397 12 N -0.338 5.338 13 C -0.023 4.023 14 C -0.156 4.156 15 C -0.127 4.127 16 H 0.100 0.900 17 C 0.081 3.919 18 H 0.077 0.923 19 C -0.229 4.229 20 N -0.389 5.389 21 C -0.371 4.371 22 H 0.108 0.892 23 C -0.191 4.191 24 N -0.582 5.582 25 Si 0.713 3.287 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.204 1.204 29 C -0.006 4.006 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.193 0.807 48 H 0.069 0.931 49 H 0.101 0.899 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.007 26.311 -0.901 27.824 hybrid contribution 1.105 -0.354 -1.134 1.623 sum -7.902 25.956 -2.036 27.209 Atomic orbital electron populations 1.20379 0.85275 1.04307 1.03704 1.22058 0.98310 0.86348 0.97754 1.70274 1.00274 1.30952 1.19794 1.26593 0.95674 0.79370 0.96753 1.19788 0.90454 0.93176 0.98597 1.21849 1.03563 0.99403 0.95349 1.21848 1.03552 0.99383 0.95378 1.84547 1.29697 1.23441 1.69201 1.22827 0.81314 0.96049 1.16634 1.15895 0.84860 0.80844 0.77578 1.90856 1.15202 1.81723 1.51944 1.48401 1.07115 1.06938 1.71308 1.22218 0.78996 0.99238 1.01872 1.22619 0.98081 0.91415 1.03437 1.22750 0.93147 0.96396 1.00441 0.90038 1.20099 0.86489 0.87848 0.97478 0.92279 1.22465 0.97870 1.02040 1.00501 1.42735 1.21525 1.41393 1.33244 1.19047 1.01846 1.07737 1.08433 0.89183 1.24661 0.97599 0.98208 0.98631 1.69700 1.19014 1.27995 1.41463 0.86580 0.79544 0.78545 0.84022 1.21107 1.21817 1.20363 1.22381 0.98844 0.77520 1.01824 0.90023 0.90517 0.88658 0.88035 0.91079 0.90691 0.92127 0.92104 0.90691 0.91075 0.91254 0.91372 0.89550 0.89749 0.91997 0.93663 0.93995 0.80713 0.93060 0.89926 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 9.87 36.01 0.36 -0.47 16 2 C 0.08 1.00 7.16 -82.46 -0.59 0.41 16 3 N -0.48 -5.75 11.26 -7.07 -0.08 -5.83 16 4 C 0.22 2.34 6.82 -12.79 -0.09 2.25 16 5 C 0.00 0.00 3.39 -91.77 -0.31 -0.32 16 6 C -0.14 -0.82 9.18 37.16 0.34 -0.48 16 7 C -0.14 -0.82 9.18 37.16 0.34 -0.48 16 8 O -0.18 -2.19 8.50 4.44 0.04 -2.15 16 9 C -0.11 -1.51 6.98 -36.84 -0.26 -1.77 16 10 C 0.62 8.97 7.82 -12.83 -0.10 8.87 16 11 O -0.52 -8.35 15.05 5.20 0.08 -8.28 16 12 N -0.61 -8.18 3.33 -172.04 -0.57 -8.76 16 13 C 0.10 1.20 5.56 -3.06 -0.02 1.18 16 14 C -0.12 -1.58 6.11 -24.90 -0.15 -1.73 16 15 C -0.11 -1.53 2.62 -88.47 -0.23 -1.77 16 16 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 17 C 0.19 3.34 2.41 -67.93 -0.16 3.17 16 18 H 0.06 1.08 8.03 -51.93 -0.42 0.66 16 19 C -0.17 -2.79 9.27 37.16 0.34 -2.45 16 20 N -0.75 -16.36 4.60 -53.42 -0.25 -16.61 16 21 C -0.24 -6.46 10.41 -15.06 -0.16 -6.61 16 22 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 23 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 24 N -0.93 -28.67 13.97 55.49 0.78 -27.90 16 25 Si 0.88 21.36 27.74 -169.99 -4.71 16.65 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 29 C 0.12 1.56 5.67 -2.53 -0.01 1.54 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.07 6.47 -51.93 -0.34 0.73 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.80 7.81 -51.93 -0.41 0.39 16 41 H 0.07 0.78 7.70 -51.93 -0.40 0.39 16 42 H 0.09 1.23 8.04 -51.93 -0.42 0.82 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.04 0.59 7.70 -51.93 -0.40 0.19 16 47 H 0.36 7.81 5.66 -40.82 -0.23 7.58 16 48 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 49 H 0.08 1.11 8.04 -51.92 -0.42 0.69 16 50 H 0.08 1.01 7.99 -51.93 -0.42 0.59 16 LS Contribution 402.79 15.07 6.07 6.07 Total: -1.00 -32.19 402.79 -7.97 -40.17 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -8.53 Total: 5.24 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -0.80 Total: 1.39 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.12 Total: -59.09 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.12 Total: -10.43 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.65 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.19 -7.97 -40.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716971447.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.606 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds