Wall clock time and date at job start Tue Mar 31 2020 20:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33689 * 126.27410 * 2 1 4 4 C 1.30620 * 108.99258 * 180.25619 * 3 2 1 5 5 C 1.50706 * 125.42052 * 179.78370 * 4 3 2 6 6 C 1.52999 * 109.47131 * 299.97395 * 5 4 3 7 7 C 1.53002 * 109.46984 * 59.97457 * 5 4 3 8 8 O 1.33659 * 109.15573 * 359.76513 * 4 3 2 9 9 C 1.35343 * 107.68592 * 359.97438 * 8 4 3 10 10 C 1.46722 * 126.64377 * 179.97438 * 9 8 4 11 11 O 1.21687 * 119.99785 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00124 * 0.02585 * 10 9 8 13 13 C 1.47022 * 125.64738 * 0.02562 * 12 10 9 14 14 C 1.54323 * 107.26849 * 181.01097 * 13 12 10 15 15 C 1.55152 * 102.94586 * 22.19524 * 14 13 12 16 16 H 1.08999 * 111.00753 * 82.60510 * 15 14 13 17 17 C 1.53004 * 111.00681 * 206.42534 * 15 14 13 18 18 H 1.08997 * 109.46966 * 59.26734 * 17 15 14 19 19 C 1.52996 * 109.47076 * 179.26934 * 17 15 14 20 20 N 1.46503 * 109.46770 * 299.27001 * 17 15 14 21 21 C 1.36936 * 119.99977 * 155.00308 * 20 17 15 22 22 H 1.08003 * 119.99946 * 359.97438 * 21 20 17 23 23 C 1.38815 * 119.99728 * 180.02562 * 21 20 17 24 24 N 1.31622 * 119.99353 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00223 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46708 * 90.00373 * 25 23 21 27 27 H 1.48498 * 109.46878 * 210.00291 * 25 23 21 28 28 H 1.48499 * 109.47309 * 330.00358 * 25 23 21 29 29 C 1.47421 * 125.64933 * 179.97438 * 12 10 9 30 30 H 1.09005 * 109.47002 * 270.14112 * 1 2 3 31 31 H 1.08995 * 109.46856 * 30.13975 * 1 2 3 32 32 H 1.08997 * 109.47278 * 150.14296 * 1 2 3 33 33 H 1.08997 * 109.46747 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.47041 * 59.99882 * 6 5 4 35 35 H 1.08996 * 109.47125 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.47539 * 300.00293 * 6 5 4 37 37 H 1.08995 * 109.46688 * 60.00219 * 7 5 4 38 38 H 1.09000 * 109.46880 * 179.97438 * 7 5 4 39 39 H 1.08991 * 109.47012 * 300.00097 * 7 5 4 40 40 H 1.09004 * 109.88328 * 61.60058 * 13 12 10 41 41 H 1.08996 * 110.01406 * 300.50394 * 13 12 10 42 42 H 1.08998 * 110.72157 * 263.82561 * 14 13 12 43 43 H 1.09001 * 110.71788 * 140.56026 * 14 13 12 44 44 H 1.09004 * 109.46959 * 174.72724 * 19 17 15 45 45 H 1.09001 * 109.46991 * 54.73059 * 19 17 15 46 46 H 1.08993 * 109.47269 * 294.72633 * 19 17 15 47 47 H 0.97007 * 120.00229 * 334.99662 * 20 17 15 48 48 H 0.97002 * 119.99567 * 179.97438 * 24 23 21 49 49 H 1.09009 * 110.36662 * 37.08151 * 29 12 10 50 50 H 1.09001 * 110.37194 * 274.76283 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5453 0.6898 -0.0055 5 6 4.7441 1.6030 -0.0121 6 6 4.7072 2.4841 -1.2623 7 6 4.7183 2.4874 1.2362 8 8 3.5890 -0.6461 -0.0040 9 6 2.3137 -1.0992 0.0033 10 6 1.8827 -2.5017 0.0068 11 8 0.6966 -2.7737 0.0130 12 7 2.8004 -3.4887 0.0032 13 6 4.2588 -3.3027 -0.0037 14 6 4.8995 -4.7064 -0.0317 15 6 3.7662 -5.5943 -0.6102 16 1 3.7434 -5.5389 -1.6985 17 6 3.9109 -7.0433 -0.1406 18 1 3.8749 -7.0776 0.9483 19 6 2.7678 -7.8822 -0.7153 20 7 5.1924 -7.5811 -0.6041 21 6 5.7858 -8.6140 0.0713 22 1 5.3094 -9.0319 0.9458 23 6 7.0003 -9.1233 -0.3677 24 7 7.5710 -10.1158 0.2818 25 14 7.8247 -8.4001 -1.8799 26 1 8.7212 -7.2890 -1.4711 27 1 8.6200 -9.4529 -2.5612 28 1 6.7882 -7.8834 -2.8093 29 6 2.5081 -4.9337 0.0066 30 1 -0.3633 0.0025 1.0277 31 1 -0.3633 0.8887 -0.5160 32 1 -0.3634 -0.8912 -0.5116 33 1 5.6558 1.0056 -0.0153 34 1 3.7954 3.0815 -1.2590 35 1 5.5740 3.1449 -1.2668 36 1 4.7255 1.8541 -2.1516 37 1 4.7446 1.8596 2.1268 38 1 5.5856 3.1476 1.2317 39 1 3.8066 3.0847 1.2394 40 1 4.5690 -2.7716 0.8962 41 1 4.5589 -2.7405 -0.8879 42 1 5.1663 -5.0287 0.9747 43 1 5.7714 -4.7193 -0.6857 44 1 2.9218 -8.9304 -0.4588 45 1 2.7465 -7.7728 -1.7996 46 1 1.8209 -7.5411 -0.2970 47 1 5.6204 -7.2057 -1.3894 48 1 8.4194 -10.4719 -0.0251 49 1 1.6305 -5.1447 -0.6046 50 1 2.3551 -5.2875 1.0262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716971447.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:16 Heat of formation + Delta-G solvation = -33.128505 kcal Electronic energy + Delta-G solvation = -29499.211133 eV Core-core repulsion = 25527.153933 eV Total energy + Delta-G solvation = -3972.057199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.61602 -41.19520 -39.24317 -37.13180 -36.84117 -36.17764 -34.30847 -32.52964 -31.92997 -31.18853 -29.52654 -28.51229 -28.12302 -26.28960 -25.38793 -24.21421 -22.96796 -22.60607 -21.43589 -21.34517 -21.02463 -19.60734 -18.73062 -18.18624 -17.51246 -17.37232 -16.77101 -16.57849 -15.85773 -15.77027 -15.32725 -15.13279 -15.05986 -14.74444 -14.36739 -14.29705 -14.23681 -14.10612 -14.01633 -13.88328 -13.55511 -13.52327 -13.33300 -13.09882 -12.99343 -12.84163 -12.73377 -12.38361 -12.33511 -12.19915 -12.07185 -11.99916 -11.93242 -11.82022 -11.75495 -11.70227 -11.46944 -11.30246 -10.95212 -10.15808 -9.72694 -9.28895 -7.97819 -5.30627 -0.36906 1.17097 1.23009 1.40456 1.43949 1.51209 1.80439 1.84808 2.52289 2.72097 3.20214 3.33984 3.46719 3.54271 3.55951 3.76736 3.90696 3.96960 4.01635 4.07238 4.18839 4.28891 4.36107 4.40735 4.43710 4.54196 4.62539 4.63874 4.67562 4.74073 4.77837 4.79875 4.82117 4.88631 4.90929 4.91433 4.99680 5.04902 5.05673 5.09891 5.19208 5.24886 5.29294 5.34226 5.36869 5.57444 5.82504 6.14823 6.25998 6.43858 6.74060 7.12827 7.88530 8.08161 9.24021 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014770 B = 0.002727 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.263459 B =10265.912500 C =11687.938117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.078 3.922 3 N -0.500 5.500 4 C 0.232 3.768 5 C -0.003 4.003 6 C -0.140 4.140 7 C -0.140 4.140 8 O -0.186 6.186 9 C -0.138 4.138 10 C 0.619 3.381 11 O -0.543 6.543 12 N -0.607 5.607 13 C 0.108 3.892 14 C -0.115 4.115 15 C -0.097 4.097 16 H 0.090 0.910 17 C 0.187 3.813 18 H 0.049 0.951 19 C -0.162 4.162 20 N -0.746 5.746 21 C -0.220 4.220 22 H 0.056 0.944 23 C -0.066 4.066 24 N -0.988 5.988 25 Si 0.952 3.048 26 H -0.275 1.275 27 H -0.303 1.303 28 H -0.251 1.251 29 C 0.121 3.879 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.033 0.967 45 H 0.052 0.948 46 H 0.069 0.931 47 H 0.365 0.635 48 H 0.256 0.744 49 H 0.085 0.915 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.022 28.970 -2.419 30.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.047 4.047 3 N -0.230 5.230 4 C 0.026 3.974 5 C -0.023 4.023 6 C -0.198 4.198 7 C -0.198 4.198 8 O -0.073 6.073 9 C -0.193 4.193 10 C 0.408 3.592 11 O -0.423 6.423 12 N -0.339 5.339 13 C -0.014 4.014 14 C -0.153 4.153 15 C -0.116 4.116 16 H 0.108 0.892 17 C 0.079 3.921 18 H 0.067 0.933 19 C -0.222 4.222 20 N -0.389 5.389 21 C -0.351 4.351 22 H 0.074 0.926 23 C -0.257 4.257 24 N -0.639 5.639 25 Si 0.780 3.220 26 H -0.201 1.201 27 H -0.230 1.230 28 H -0.176 1.176 29 C -0.001 4.001 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.138 0.862 34 H 0.079 0.921 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.199 0.801 48 H 0.064 0.936 49 H 0.104 0.896 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.799 29.311 -2.243 30.686 hybrid contribution 0.958 -1.203 -0.623 1.660 sum -7.841 28.108 -2.866 29.322 Atomic orbital electron populations 1.20407 0.84238 1.04516 1.04250 1.22438 0.99234 0.86428 0.96589 1.70326 1.00890 1.30789 1.20971 1.27547 0.96485 0.79191 0.94163 1.20139 0.89494 0.93040 0.99587 1.21848 1.04228 0.99277 0.94417 1.21847 1.04220 0.99259 0.94461 1.84534 1.29095 1.24122 1.69548 1.22623 0.82036 0.95669 1.18937 1.16009 0.84634 0.81367 0.77173 1.90833 1.16081 1.82254 1.53154 1.48416 1.07630 1.06740 1.71067 1.22190 0.78009 0.98419 1.02815 1.22578 0.97986 0.91998 1.02768 1.22545 0.94159 0.94080 1.00857 0.89189 1.20255 0.84867 0.89998 0.97012 0.93325 1.22351 0.98701 1.00045 1.01079 1.42689 1.22889 1.40311 1.33035 1.18973 1.01272 1.07807 1.07039 0.92647 1.25467 0.98746 0.99127 1.02388 1.69892 1.19655 1.30396 1.43927 0.85445 0.78777 0.77517 0.80248 1.20072 1.23046 1.17576 1.22294 0.98322 0.77658 1.01875 0.89236 0.88994 0.89649 0.86221 0.92123 0.88160 0.92700 0.92741 0.88151 0.92117 0.90488 0.90269 0.90670 0.89372 0.94771 0.92867 0.91208 0.80126 0.93554 0.89649 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 9.87 71.24 0.70 -0.83 16 2 C 0.08 1.87 7.16 41.84 0.30 2.17 16 3 N -0.50 -11.27 11.26 -291.05 -3.28 -14.54 16 4 C 0.23 4.47 6.82 88.29 0.60 5.07 16 5 C 0.00 -0.04 3.39 -11.54 -0.04 -0.07 16 6 C -0.14 -1.24 9.18 71.98 0.66 -0.58 16 7 C -0.14 -1.25 9.18 71.98 0.66 -0.59 16 8 O -0.19 -4.15 8.50 -7.02 -0.06 -4.21 16 9 C -0.14 -3.53 6.98 24.05 0.17 -3.36 16 10 C 0.62 17.30 7.82 86.46 0.68 17.98 16 11 O -0.54 -17.19 15.05 -4.31 -0.06 -17.26 16 12 N -0.61 -15.44 3.33 -816.44 -2.72 -18.16 16 13 C 0.11 2.37 5.56 86.73 0.48 2.86 16 14 C -0.12 -2.87 6.11 31.78 0.19 -2.68 16 15 C -0.10 -2.56 2.62 -9.40 -0.02 -2.59 16 16 H 0.09 2.30 8.14 -2.39 -0.02 2.29 16 17 C 0.19 6.35 2.41 44.99 0.11 6.46 16 18 H 0.05 1.77 8.03 -2.39 -0.02 1.75 16 19 C -0.16 -5.17 9.27 71.98 0.67 -4.50 16 20 N -0.75 -31.96 4.60 -322.93 -1.49 -33.44 16 21 C -0.22 -11.93 10.41 84.03 0.87 -11.06 16 22 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 23 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 24 N -0.99 -62.36 13.97 21.65 0.30 -62.06 16 25 Si 0.95 43.81 27.74 68.60 1.90 45.71 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 27 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 28 H -0.25 -10.32 6.52 99.48 0.65 -9.68 16 29 C 0.12 3.02 5.67 86.86 0.49 3.52 16 30 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.89 6.47 -2.39 -0.02 1.87 16 33 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.08 1.61 7.81 -2.38 -0.02 1.59 16 41 H 0.08 1.61 7.70 -2.39 -0.02 1.59 16 42 H 0.07 2.05 8.04 -2.39 -0.02 2.04 16 43 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.07 1.83 7.70 -2.39 -0.02 1.81 16 47 H 0.37 14.97 5.66 -92.70 -0.52 14.44 16 48 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 49 H 0.09 2.12 8.04 -2.38 -0.02 2.10 16 50 H 0.08 1.94 7.99 -2.39 -0.02 1.92 16 Total: -1.00 -70.78 402.79 1.94 -68.84 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.34 Total: 26.64 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 6.99 Total: 8.47 kcal Atomic # 7 Polarization: -121.02 SS G_CDS: -7.18 Total: -128.20 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.12 Total: -21.46 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.90 Total: 45.71 kcal Total: -70.78 1.94 -68.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716971447.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.715 kcal (2) G-P(sol) polarization free energy of solvation -70.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds