Wall clock time and date at job start Tue Mar 31 2020 19:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 110.36411 * 2 1 4 4 C 1.54374 * 110.32811 * 237.82112 * 2 1 3 5 5 N 1.48551 * 104.59541 * 264.95498 * 4 2 1 6 6 C 1.46903 * 111.00202 * 200.95973 * 5 4 2 7 7 C 1.50709 * 109.47274 * 190.00006 * 6 5 4 8 8 O 1.21290 * 119.99791 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99860 * 179.97438 * 7 6 5 10 10 C 1.37094 * 119.99636 * 179.97438 * 9 7 6 11 11 H 1.08002 * 120.00530 * 0.02562 * 10 9 7 12 12 C 1.38948 * 119.99752 * 179.97438 * 10 9 7 13 13 N 1.31412 * 120.00077 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 120.00126 * 0.02562 * 12 10 9 15 15 H 1.48507 * 109.46963 * 89.99972 * 14 12 10 16 16 H 1.48503 * 109.47092 * 209.99748 * 14 12 10 17 17 H 1.48498 * 109.47194 * 329.99803 * 14 12 10 18 18 C 1.48561 * 104.22369 * 320.51345 * 5 4 2 19 19 C 1.54259 * 110.32733 * 122.17877 * 2 1 3 20 20 H 1.09002 * 110.32223 * 0.02562 * 19 2 1 21 21 N 1.46501 * 110.32785 * 237.89725 * 19 2 1 22 22 C 1.34769 * 120.00376 * 156.42387 * 21 19 2 23 23 O 1.21613 * 119.99775 * 0.02562 * 22 21 19 24 24 C 1.47102 * 120.00356 * 179.97438 * 22 21 19 25 25 C 1.32617 * 124.62121 * 180.02562 * 24 22 21 26 26 C 1.51107 * 110.75552 * 180.02562 * 25 24 22 27 27 C 1.54580 * 104.84403 * 16.60225 * 26 25 24 28 28 C 1.51107 * 124.62083 * 359.73314 * 24 22 21 29 29 H 1.09002 * 109.47426 * 297.81247 * 1 2 3 30 30 H 1.08997 * 109.47602 * 57.82244 * 1 2 3 31 31 H 1.09007 * 109.46614 * 177.81719 * 1 2 3 32 32 H 1.09000 * 109.47092 * 182.17869 * 3 2 1 33 33 H 1.09001 * 109.47018 * 302.17988 * 3 2 1 34 34 H 1.08998 * 109.46997 * 62.18624 * 3 2 1 35 35 H 1.09004 * 110.41045 * 23.73158 * 4 2 1 36 36 H 1.09000 * 110.41558 * 146.17246 * 4 2 1 37 37 H 1.09000 * 109.46869 * 309.99203 * 6 5 4 38 38 H 1.08992 * 109.47253 * 69.99759 * 6 5 4 39 39 H 0.97002 * 119.99652 * 0.02562 * 9 7 6 40 40 H 0.97007 * 120.00138 * 180.02562 * 13 12 10 41 41 H 1.09005 * 110.41198 * 280.70728 * 18 5 4 42 42 H 1.08998 * 110.41368 * 158.26250 * 18 5 4 43 43 H 0.97008 * 119.99542 * 336.42709 * 21 19 2 44 44 H 1.07995 * 124.61726 * 0.02736 * 25 24 22 45 45 H 1.09010 * 110.36355 * 135.44107 * 26 25 24 46 46 H 1.08997 * 110.36587 * 257.75371 * 26 25 24 47 47 H 1.08996 * 110.98185 * 93.06733 * 27 26 25 48 48 H 1.08998 * 110.98163 * 216.83628 * 27 26 25 49 49 H 1.09007 * 110.36362 * 282.24150 * 28 24 22 50 50 H 1.09008 * 110.36475 * 44.54848 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0624 1.4344 0.0000 4 6 2.0663 -0.7709 -1.2252 5 7 2.3149 -2.1465 -0.7225 6 6 3.2651 -2.8592 -1.5869 7 6 3.3061 -4.3142 -1.1960 8 8 2.6123 -4.7176 -0.2866 9 7 4.1136 -5.1670 -1.8570 10 6 4.1512 -6.4904 -1.5011 11 1 3.5334 -6.8497 -0.6913 12 6 4.9834 -7.3698 -2.1829 13 7 5.0198 -8.6383 -1.8415 14 14 6.0514 -6.7487 -3.5840 15 1 7.3657 -6.3114 -3.0483 16 1 6.2571 -7.8393 -4.5707 17 1 5.3806 -5.6016 -4.2469 18 6 2.8808 -1.9421 0.6358 19 6 2.0659 -0.7704 1.2243 20 1 1.2388 -1.1489 1.8251 21 7 2.9273 0.0955 2.0333 22 6 3.1160 -0.1733 3.3404 23 8 2.5715 -1.1349 3.8482 24 6 3.9814 0.6958 4.1526 25 6 4.2307 0.5171 5.4428 26 6 5.1576 1.5912 5.9629 27 6 5.1085 2.7078 4.8950 28 6 4.7123 1.9103 3.6291 29 1 -0.3634 0.4795 0.9089 30 1 -0.3634 0.5472 -0.8698 31 1 -0.3633 -1.0270 -0.0391 32 1 3.1516 1.4177 -0.0391 33 1 1.6757 1.9655 -0.8698 34 1 1.7393 1.9419 0.9089 35 1 1.3214 -0.7858 -2.0209 36 1 2.9941 -0.3225 -1.5803 37 1 2.9478 -2.7710 -2.6259 38 1 4.2578 -2.4241 -1.4718 39 1 4.6688 -4.8443 -2.5841 40 1 5.6011 -9.2521 -2.3173 41 1 3.9361 -1.6769 0.5719 42 1 2.7492 -2.8387 1.2414 43 1 3.3618 0.8624 1.6282 44 1 3.8265 -0.2866 6.0402 45 1 4.8016 1.9677 6.9220 46 1 6.1715 1.2031 6.0596 47 1 4.3535 3.4533 5.1443 48 1 6.0867 3.1721 4.7706 49 1 5.6002 1.6084 3.0735 50 1 4.0535 2.5067 2.9978 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717577910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:08 Heat of formation + Delta-G solvation = -41.531426 kcal Electronic energy + Delta-G solvation = -29576.415364 eV Core-core repulsion = 25603.993787 eV Total energy + Delta-G solvation = -3972.421577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.68133 -39.40508 -38.18269 -37.60759 -34.84711 -33.85261 -33.31419 -31.61430 -30.12080 -29.20275 -28.55428 -27.56927 -27.24083 -25.10629 -23.84048 -22.41258 -21.40725 -20.81752 -19.65547 -19.25315 -18.70904 -18.14480 -17.44119 -16.37797 -16.05345 -15.91525 -15.33816 -15.12165 -14.93398 -14.80422 -14.30353 -14.12559 -13.91941 -13.49932 -13.33406 -13.15958 -13.07748 -12.84945 -12.76038 -12.43812 -12.30323 -12.19516 -12.12723 -11.98955 -11.80725 -11.67948 -11.58504 -11.55599 -11.31001 -11.09377 -11.04628 -10.87414 -10.57490 -10.56696 -9.96885 -9.92933 -9.50946 -9.29322 -9.04789 -8.59919 -8.13870 -8.06586 -6.26079 -3.77163 1.17968 3.04500 3.05017 3.08781 3.16967 3.20132 3.80003 4.01833 4.13559 4.14601 4.19595 4.31778 4.51137 4.58358 4.69428 4.72231 4.88121 4.94691 5.11414 5.15129 5.24325 5.26535 5.29008 5.29414 5.36366 5.40161 5.43019 5.45642 5.52786 5.55779 5.60046 5.67639 5.72140 5.75769 5.80103 5.86978 5.94704 5.97384 6.02144 6.10355 6.21579 6.25014 6.39370 6.42893 7.03713 7.09756 7.42602 7.63438 8.17695 8.20086 8.65901 9.01054 9.47822 9.89984 10.87305 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012317 B = 0.002779 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.719123 B =10072.655978 C =11240.008978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.074 4.074 3 C -0.145 4.145 4 C 0.038 3.962 5 N -0.480 5.480 6 C 0.033 3.967 7 C 0.454 3.546 8 O -0.554 6.554 9 N -0.594 5.594 10 C -0.302 4.302 11 H 0.120 0.880 12 C 0.040 3.960 13 N -0.883 5.883 14 Si 0.879 3.121 15 H -0.272 1.272 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.030 3.970 19 C 0.148 3.852 20 H 0.103 0.897 21 N -0.720 5.720 22 C 0.562 3.438 23 O -0.533 6.533 24 C -0.196 4.196 25 C -0.073 4.073 26 C -0.108 4.108 27 C -0.123 4.123 28 C -0.091 4.091 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.043 0.957 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.369 0.631 40 H 0.272 0.728 41 H 0.041 0.959 42 H 0.103 0.897 43 H 0.399 0.601 44 H 0.139 0.861 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.012 29.013 6.199 29.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.075 4.075 3 C -0.202 4.202 4 C -0.091 4.091 5 N -0.203 5.203 6 C -0.099 4.099 7 C 0.239 3.761 8 O -0.435 6.435 9 N -0.235 5.235 10 C -0.431 4.431 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.524 5.524 14 Si 0.706 3.294 15 H -0.198 1.198 16 H -0.202 1.202 17 H -0.195 1.195 18 C -0.098 4.098 19 C 0.043 3.957 20 H 0.121 0.879 21 N -0.374 5.374 22 C 0.350 3.650 23 O -0.410 6.410 24 C -0.199 4.199 25 C -0.092 4.092 26 C -0.145 4.145 27 C -0.160 4.160 28 C -0.128 4.128 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.202 0.798 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.121 0.879 43 H 0.237 0.763 44 H 0.157 0.843 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.098 0.902 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.259 27.488 7.138 28.428 hybrid contribution 2.044 0.981 -1.565 2.755 sum 0.785 28.470 5.573 29.021 Atomic orbital electron populations 1.21818 0.92737 1.03134 1.01426 1.21519 0.97106 0.94608 0.94279 1.21886 1.00352 0.95430 1.02565 1.23306 0.99878 0.89084 0.96812 1.65090 1.40813 1.12903 1.01530 1.22096 0.94749 0.94955 0.98132 1.19609 0.83943 0.86599 0.85905 1.90573 1.43758 1.77968 1.31169 1.42202 1.39410 1.09362 1.32476 1.19430 1.24226 0.81376 1.18023 0.86286 1.25028 0.97841 0.95223 0.98155 1.69626 1.38837 1.02627 1.41271 0.86679 0.81239 0.78961 0.82538 1.19751 1.20213 1.19524 1.23566 0.95765 0.99329 0.91183 1.21830 0.93219 0.89376 0.91264 0.87903 1.46221 1.50340 1.31366 1.09511 1.18026 0.80848 0.84320 0.81846 1.90843 1.49132 1.28886 1.72158 1.21848 1.02300 0.99745 0.96006 1.24080 0.93098 0.97159 0.94913 1.21495 0.99365 0.94208 0.99435 1.22457 1.02075 0.97243 0.94228 1.21285 0.99494 0.93641 0.98398 0.92732 0.92388 0.91070 0.92663 0.91662 0.91869 0.89651 0.93867 0.89104 0.93153 0.79841 0.91692 0.94105 0.87902 0.76282 0.84323 0.90182 0.89542 0.90775 0.90523 0.90215 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 8.23 37.16 0.31 -1.02 16 2 C -0.07 -0.76 1.03 -153.13 -0.16 -0.92 16 3 C -0.14 -1.04 7.11 37.16 0.26 -0.78 16 4 C 0.04 0.44 5.55 -2.19 -0.01 0.42 16 5 N -0.48 -7.83 4.98 -231.41 -1.15 -8.98 16 6 C 0.03 0.56 5.32 -4.97 -0.03 0.54 16 7 C 0.45 10.68 7.63 -10.98 -0.08 10.60 16 8 O -0.55 -15.45 14.80 5.55 0.08 -15.37 16 9 N -0.59 -14.56 5.09 -10.96 -0.06 -14.61 16 10 C -0.30 -8.76 10.16 -14.94 -0.15 -8.91 16 11 H 0.12 3.96 7.39 -52.49 -0.39 3.57 16 12 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -26.36 13.96 55.50 0.77 -25.58 16 14 Si 0.88 19.72 27.74 -169.99 -4.71 15.01 16 15 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 18 C 0.03 0.51 5.64 -2.18 -0.01 0.49 16 19 C 0.15 1.97 3.01 -66.55 -0.20 1.77 16 20 H 0.10 1.60 7.17 -51.93 -0.37 1.23 16 21 N -0.72 -8.12 4.55 -53.65 -0.24 -8.37 16 22 C 0.56 7.58 7.79 -12.67 -0.10 7.48 16 23 O -0.53 -9.61 16.44 5.27 0.09 -9.52 16 24 C -0.20 -2.00 6.09 -102.73 -0.63 -2.62 16 25 C -0.07 -0.68 10.43 -36.01 -0.38 -1.06 16 26 C -0.11 -0.67 6.80 -26.85 -0.18 -0.85 16 27 C -0.12 -0.66 7.17 -24.97 -0.18 -0.84 16 28 C -0.09 -0.61 6.04 -26.75 -0.16 -0.78 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.05 0.36 6.95 -51.93 -0.36 0.00 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.43 7.73 -51.93 -0.40 0.02 16 35 H 0.09 0.93 7.86 -51.93 -0.41 0.52 16 36 H 0.04 0.45 7.68 -51.93 -0.40 0.05 16 37 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 38 H 0.05 0.77 7.77 -51.93 -0.40 0.36 16 39 H 0.37 7.91 5.76 -40.82 -0.24 7.67 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.04 0.65 7.67 -51.93 -0.40 0.25 16 42 H 0.10 2.17 7.24 -51.93 -0.38 1.80 16 43 H 0.40 3.35 4.85 -40.82 -0.20 3.16 16 44 H 0.14 1.38 8.03 -52.49 -0.42 0.96 16 45 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 46 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.07 0.39 7.82 -51.92 -0.41 -0.01 16 LS Contribution 395.37 15.07 5.96 5.96 Total: -1.00 -36.02 395.37 -9.22 -45.24 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -8.16 Total: 11.67 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -1.79 Total: 4.56 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.68 Total: -57.54 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: 0.17 Total: -24.89 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.71 Total: 15.01 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.02 -9.22 -45.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717577910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.704 kcal (2) G-P(sol) polarization free energy of solvation -36.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds