Wall clock time and date at job start Tue Mar 31 2020 19:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 110.36411 * 2 1 4 4 C 1.54374 * 110.32811 * 237.82112 * 2 1 3 5 5 N 1.48551 * 104.59541 * 264.95498 * 4 2 1 6 6 C 1.46903 * 111.00202 * 200.95973 * 5 4 2 7 7 C 1.50709 * 109.47274 * 190.00006 * 6 5 4 8 8 O 1.21290 * 119.99791 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99860 * 179.97438 * 7 6 5 10 10 C 1.37094 * 119.99636 * 179.97438 * 9 7 6 11 11 H 1.08002 * 120.00530 * 0.02562 * 10 9 7 12 12 C 1.38948 * 119.99752 * 179.97438 * 10 9 7 13 13 N 1.31412 * 120.00077 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 120.00126 * 0.02562 * 12 10 9 15 15 H 1.48507 * 109.46963 * 89.99972 * 14 12 10 16 16 H 1.48503 * 109.47092 * 209.99748 * 14 12 10 17 17 H 1.48498 * 109.47194 * 329.99803 * 14 12 10 18 18 C 1.48561 * 104.22369 * 320.51345 * 5 4 2 19 19 C 1.54259 * 110.32733 * 122.17877 * 2 1 3 20 20 H 1.09002 * 110.32223 * 0.02562 * 19 2 1 21 21 N 1.46501 * 110.32785 * 237.89725 * 19 2 1 22 22 C 1.34769 * 120.00376 * 156.42387 * 21 19 2 23 23 O 1.21613 * 119.99775 * 0.02562 * 22 21 19 24 24 C 1.47102 * 120.00356 * 179.97438 * 22 21 19 25 25 C 1.32617 * 124.62121 * 180.02562 * 24 22 21 26 26 C 1.51107 * 110.75552 * 180.02562 * 25 24 22 27 27 C 1.54580 * 104.84403 * 16.60225 * 26 25 24 28 28 C 1.51107 * 124.62083 * 359.73314 * 24 22 21 29 29 H 1.09002 * 109.47426 * 297.81247 * 1 2 3 30 30 H 1.08997 * 109.47602 * 57.82244 * 1 2 3 31 31 H 1.09007 * 109.46614 * 177.81719 * 1 2 3 32 32 H 1.09000 * 109.47092 * 182.17869 * 3 2 1 33 33 H 1.09001 * 109.47018 * 302.17988 * 3 2 1 34 34 H 1.08998 * 109.46997 * 62.18624 * 3 2 1 35 35 H 1.09004 * 110.41045 * 23.73158 * 4 2 1 36 36 H 1.09000 * 110.41558 * 146.17246 * 4 2 1 37 37 H 1.09000 * 109.46869 * 309.99203 * 6 5 4 38 38 H 1.08992 * 109.47253 * 69.99759 * 6 5 4 39 39 H 0.97002 * 119.99652 * 0.02562 * 9 7 6 40 40 H 0.97007 * 120.00138 * 180.02562 * 13 12 10 41 41 H 1.09005 * 110.41198 * 280.70728 * 18 5 4 42 42 H 1.08998 * 110.41368 * 158.26250 * 18 5 4 43 43 H 0.97008 * 119.99542 * 336.42709 * 21 19 2 44 44 H 1.07995 * 124.61726 * 0.02736 * 25 24 22 45 45 H 1.09010 * 110.36355 * 135.44107 * 26 25 24 46 46 H 1.08997 * 110.36587 * 257.75371 * 26 25 24 47 47 H 1.08996 * 110.98185 * 93.06733 * 27 26 25 48 48 H 1.08998 * 110.98163 * 216.83628 * 27 26 25 49 49 H 1.09007 * 110.36362 * 282.24150 * 28 24 22 50 50 H 1.09008 * 110.36475 * 44.54848 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0624 1.4344 0.0000 4 6 2.0663 -0.7709 -1.2252 5 7 2.3149 -2.1465 -0.7225 6 6 3.2651 -2.8592 -1.5869 7 6 3.3061 -4.3142 -1.1960 8 8 2.6123 -4.7176 -0.2866 9 7 4.1136 -5.1670 -1.8570 10 6 4.1512 -6.4904 -1.5011 11 1 3.5334 -6.8497 -0.6913 12 6 4.9834 -7.3698 -2.1829 13 7 5.0198 -8.6383 -1.8415 14 14 6.0514 -6.7487 -3.5840 15 1 7.3657 -6.3114 -3.0483 16 1 6.2571 -7.8393 -4.5707 17 1 5.3806 -5.6016 -4.2469 18 6 2.8808 -1.9421 0.6358 19 6 2.0659 -0.7704 1.2243 20 1 1.2388 -1.1489 1.8251 21 7 2.9273 0.0955 2.0333 22 6 3.1160 -0.1733 3.3404 23 8 2.5715 -1.1349 3.8482 24 6 3.9814 0.6958 4.1526 25 6 4.2307 0.5171 5.4428 26 6 5.1576 1.5912 5.9629 27 6 5.1085 2.7078 4.8950 28 6 4.7123 1.9103 3.6291 29 1 -0.3634 0.4795 0.9089 30 1 -0.3634 0.5472 -0.8698 31 1 -0.3633 -1.0270 -0.0391 32 1 3.1516 1.4177 -0.0391 33 1 1.6757 1.9655 -0.8698 34 1 1.7393 1.9419 0.9089 35 1 1.3214 -0.7858 -2.0209 36 1 2.9941 -0.3225 -1.5803 37 1 2.9478 -2.7710 -2.6259 38 1 4.2578 -2.4241 -1.4718 39 1 4.6688 -4.8443 -2.5841 40 1 5.6011 -9.2521 -2.3173 41 1 3.9361 -1.6769 0.5719 42 1 2.7492 -2.8387 1.2414 43 1 3.3618 0.8624 1.6282 44 1 3.8265 -0.2866 6.0402 45 1 4.8016 1.9677 6.9220 46 1 6.1715 1.2031 6.0596 47 1 4.3535 3.4533 5.1443 48 1 6.0867 3.1721 4.7706 49 1 5.6002 1.6084 3.0735 50 1 4.0535 2.5067 2.9978 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717577910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:07 Heat of formation + Delta-G solvation = -69.949904 kcal Electronic energy + Delta-G solvation = -29577.647682 eV Core-core repulsion = 25603.993787 eV Total energy + Delta-G solvation = -3973.653895 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.73334 -40.56928 -39.75105 -38.52639 -36.26814 -35.70858 -34.36663 -33.76547 -31.04890 -30.09137 -29.33591 -28.56047 -28.13392 -26.68566 -25.20644 -23.50030 -22.36114 -21.54712 -21.30261 -20.61144 -20.15812 -19.49444 -18.24418 -17.75042 -17.45207 -16.81986 -16.61110 -16.49769 -16.21982 -15.93118 -15.58454 -15.44264 -15.06530 -15.00356 -14.57273 -14.24197 -14.13044 -14.04687 -13.92258 -13.59956 -13.48067 -13.16154 -13.05403 -12.91957 -12.81416 -12.64139 -12.61746 -12.43769 -12.39381 -12.06557 -12.00010 -11.99382 -11.87912 -11.78431 -11.59004 -11.49862 -11.06638 -10.44612 -10.28537 -10.24973 -9.86502 -9.40410 -8.42790 -6.04271 0.33305 1.27873 1.34255 1.43474 1.94754 2.05447 2.21772 2.21921 2.66917 3.12383 3.23115 3.39639 3.52802 3.55865 3.63760 3.86399 4.07321 4.10841 4.12321 4.21739 4.24802 4.29060 4.31503 4.34603 4.42851 4.65406 4.70908 4.77019 4.78521 4.81081 4.83689 4.88045 4.96482 4.98658 4.99237 5.04859 5.16853 5.18690 5.30686 5.33173 5.36546 5.39534 5.43600 5.50770 5.51093 5.80561 5.89539 6.01266 6.49590 6.58473 6.87019 7.18116 7.37929 7.97203 8.75421 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012317 B = 0.002779 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.719123 B =10072.655978 C =11240.008978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.065 4.065 3 C -0.141 4.141 4 C 0.040 3.960 5 N -0.509 5.509 6 C 0.045 3.955 7 C 0.448 3.552 8 O -0.611 6.611 9 N -0.592 5.592 10 C -0.329 4.329 11 H 0.049 0.951 12 C -0.018 4.018 13 N -0.937 5.937 14 Si 0.969 3.031 15 H -0.257 1.257 16 H -0.274 1.274 17 H -0.228 1.228 18 C 0.036 3.964 19 C 0.154 3.846 20 H 0.066 0.934 21 N -0.700 5.700 22 C 0.552 3.448 23 O -0.595 6.595 24 C -0.214 4.214 25 C -0.077 4.077 26 C -0.105 4.105 27 C -0.116 4.116 28 C -0.086 4.086 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.128 0.872 38 H 0.083 0.917 39 H 0.390 0.610 40 H 0.279 0.721 41 H 0.048 0.952 42 H 0.037 0.963 43 H 0.418 0.582 44 H 0.118 0.882 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.087 0.913 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.346 34.603 2.979 34.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.066 4.066 3 C -0.199 4.199 4 C -0.087 4.087 5 N -0.234 5.234 6 C -0.086 4.086 7 C 0.236 3.764 8 O -0.494 6.494 9 N -0.234 5.234 10 C -0.459 4.459 11 H 0.067 0.933 12 C -0.216 4.216 13 N -0.578 5.578 14 Si 0.788 3.212 15 H -0.181 1.181 16 H -0.198 1.198 17 H -0.151 1.151 18 C -0.093 4.093 19 C 0.048 3.952 20 H 0.084 0.916 21 N -0.355 5.355 22 C 0.342 3.658 23 O -0.477 6.477 24 C -0.217 4.217 25 C -0.097 4.097 26 C -0.141 4.141 27 C -0.153 4.153 28 C -0.123 4.123 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.146 0.854 38 H 0.101 0.899 39 H 0.226 0.774 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.260 0.740 44 H 0.136 0.864 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.101 0.899 48 H 0.115 0.885 49 H 0.106 0.894 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.082 33.157 3.886 33.401 hybrid contribution 1.194 -0.888 -0.390 1.539 sum 2.276 32.269 3.496 32.537 Atomic orbital electron populations 1.21812 0.92671 1.01699 1.02796 1.21529 0.97147 0.96280 0.91618 1.21894 1.01267 0.92629 1.04061 1.23464 1.01717 0.86145 0.97360 1.64946 1.40837 1.16328 1.01246 1.22032 0.97045 0.89750 0.99777 1.21015 0.81871 0.89316 0.84241 1.90563 1.45685 1.79706 1.33480 1.42006 1.40330 1.07704 1.33404 1.18975 1.24935 0.84227 1.17713 0.93272 1.26185 0.98957 0.94893 1.01570 1.69822 1.40022 1.04691 1.43234 0.85317 0.78796 0.79687 0.77388 1.18125 1.19849 1.15121 1.23310 0.96754 0.97876 0.91371 1.21577 0.91964 0.89448 0.92258 0.91568 1.46039 1.49529 1.31199 1.08694 1.18741 0.80515 0.83936 0.82600 1.90815 1.51759 1.31726 1.73393 1.21956 1.02694 1.01011 0.96017 1.24375 0.93062 0.97381 0.94849 1.21563 0.98769 0.93403 1.00407 1.22488 1.03460 0.96697 0.92674 1.21352 0.99532 0.92056 0.99389 0.92554 0.89674 0.94069 0.91184 0.89308 0.91277 0.88153 0.90866 0.85379 0.89929 0.77413 0.91118 0.93368 0.94412 0.74048 0.86379 0.88805 0.88578 0.89935 0.88501 0.89427 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.23 71.98 0.59 -1.85 16 2 C -0.06 -1.18 1.03 -51.29 -0.05 -1.24 16 3 C -0.14 -1.37 7.11 71.98 0.51 -0.86 16 4 C 0.04 0.79 5.55 86.45 0.48 1.27 16 5 N -0.51 -16.31 4.98 -886.05 -4.41 -20.72 16 6 C 0.05 1.46 5.32 85.56 0.46 1.92 16 7 C 0.45 21.63 7.63 87.66 0.67 22.30 16 8 O -0.61 -36.84 14.80 -3.06 -0.05 -36.88 16 9 N -0.59 -29.27 5.09 -306.98 -1.56 -30.83 16 10 C -0.33 -20.19 10.16 84.04 0.85 -19.34 16 11 H 0.05 3.62 7.39 -2.91 -0.02 3.59 16 12 C -0.02 -1.03 5.50 84.93 0.47 -0.56 16 13 N -0.94 -58.37 13.96 21.66 0.30 -58.06 16 14 Si 0.97 39.63 27.74 68.60 1.90 41.53 16 15 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.23 -7.75 6.52 99.48 0.65 -7.11 16 18 C 0.04 1.27 5.64 86.45 0.49 1.76 16 19 C 0.15 4.21 3.01 45.89 0.14 4.35 16 20 H 0.07 2.31 7.17 -2.39 -0.02 2.29 16 21 N -0.70 -15.56 4.55 -441.89 -2.01 -17.57 16 22 C 0.55 15.68 7.79 86.57 0.67 16.35 16 23 O -0.59 -23.80 16.44 -4.07 -0.07 -23.87 16 24 C -0.21 -4.29 6.09 -18.57 -0.11 -4.41 16 25 C -0.08 -1.46 10.43 24.65 0.26 -1.20 16 26 C -0.10 -1.09 6.80 30.51 0.21 -0.88 16 27 C -0.12 -0.84 7.17 31.74 0.23 -0.62 16 28 C -0.09 -0.91 6.04 30.58 0.18 -0.73 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.07 0.51 6.95 -2.39 -0.02 0.49 16 33 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.64 7.73 -2.39 -0.02 0.62 16 35 H 0.10 1.74 7.86 -2.39 -0.02 1.72 16 36 H 0.07 1.07 7.68 -2.39 -0.02 1.05 16 37 H 0.13 3.23 8.08 -2.39 -0.02 3.21 16 38 H 0.08 2.18 7.77 -2.39 -0.02 2.16 16 39 H 0.39 15.71 5.76 -92.71 -0.53 15.18 16 40 H 0.28 15.82 8.31 -92.70 -0.77 15.05 16 41 H 0.05 1.55 7.67 -2.38 -0.02 1.53 16 42 H 0.04 1.79 7.24 -2.39 -0.02 1.77 16 43 H 0.42 5.92 4.85 -92.70 -0.45 5.47 16 44 H 0.12 2.64 8.03 -2.91 -0.02 2.62 16 45 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 49 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 50 H 0.09 0.62 7.82 -2.38 -0.02 0.61 16 Total: -1.00 -92.69 395.37 0.06 -92.64 By element: Atomic # 1 Polarization: 37.58 SS G_CDS: -0.09 Total: 37.49 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 6.04 Total: 16.28 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -7.68 Total: -127.19 kcal Atomic # 8 Polarization: -60.64 SS G_CDS: -0.11 Total: -60.75 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.90 Total: 41.53 kcal Total: -92.69 0.06 -92.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717577910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.686 kcal (2) G-P(sol) polarization free energy of solvation -92.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds