Wall clock time and date at job start Tue Mar 31 2020 19:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 110.36950 * 2 1 4 4 C 1.54384 * 110.32331 * 237.82332 * 2 1 3 5 5 N 1.48559 * 104.59487 * 264.95578 * 4 2 1 6 6 C 1.46900 * 111.00078 * 200.95638 * 5 4 2 7 7 C 1.50698 * 109.47204 * 170.00014 * 6 5 4 8 8 O 1.21294 * 119.99967 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00110 * 180.02562 * 7 6 5 10 10 C 1.37100 * 120.00298 * 180.02562 * 9 7 6 11 11 H 1.07999 * 119.99952 * 359.97438 * 10 9 7 12 12 C 1.38951 * 119.99944 * 179.97438 * 10 9 7 13 13 N 1.31401 * 120.00403 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99761 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46767 * 59.99731 * 14 12 10 16 16 H 1.48496 * 109.46813 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47013 * 300.00248 * 14 12 10 18 18 C 1.48561 * 104.22152 * 320.51277 * 5 4 2 19 19 C 1.54255 * 110.32922 * 122.18844 * 2 1 3 20 20 H 1.09005 * 110.32480 * 237.89766 * 19 2 1 21 21 N 1.46506 * 110.32236 * 359.97438 * 19 2 1 22 22 C 1.34773 * 119.99969 * 204.72478 * 21 19 2 23 23 O 1.21617 * 120.00330 * 0.02562 * 22 21 19 24 24 C 1.47106 * 120.00040 * 180.02562 * 22 21 19 25 25 C 1.32608 * 124.62154 * 179.70138 * 24 22 21 26 26 C 1.51118 * 110.75836 * 179.84161 * 25 24 22 27 27 C 1.54576 * 104.89925 * 343.80754 * 26 25 24 28 28 C 1.51112 * 124.61717 * 0.02562 * 24 22 21 29 29 H 1.09002 * 109.46971 * 297.80925 * 1 2 3 30 30 H 1.08989 * 109.47693 * 57.81423 * 1 2 3 31 31 H 1.09005 * 109.47024 * 177.82112 * 1 2 3 32 32 H 1.09000 * 109.47243 * 182.18396 * 3 2 1 33 33 H 1.08997 * 109.46992 * 302.18689 * 3 2 1 34 34 H 1.09005 * 109.46551 * 62.18598 * 3 2 1 35 35 H 1.09005 * 110.40902 * 23.73066 * 4 2 1 36 36 H 1.08997 * 110.41445 * 146.17049 * 4 2 1 37 37 H 1.09004 * 109.47204 * 289.99818 * 6 5 4 38 38 H 1.09007 * 109.46821 * 49.99685 * 6 5 4 39 39 H 0.96999 * 120.00302 * 359.97438 * 9 7 6 40 40 H 0.97001 * 120.00747 * 180.02562 * 13 12 10 41 41 H 1.08995 * 110.41200 * 280.70563 * 18 5 4 42 42 H 1.09004 * 110.40846 * 158.26099 * 18 5 4 43 43 H 0.97005 * 119.99811 * 25.00531 * 21 19 2 44 44 H 1.07998 * 124.62360 * 0.02562 * 25 24 22 45 45 H 1.08992 * 110.51789 * 224.85011 * 26 25 24 46 46 H 1.09004 * 110.24125 * 102.61884 * 26 25 24 47 47 H 1.08993 * 110.98444 * 266.70505 * 27 26 25 48 48 H 1.09007 * 111.01327 * 142.92153 * 27 26 25 49 49 H 1.09003 * 110.36972 * 315.43716 * 28 24 22 50 50 H 1.08998 * 110.36803 * 77.64819 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0626 1.4344 0.0000 4 6 2.0662 -0.7710 -1.2254 5 7 2.3147 -2.1467 -0.7227 6 6 3.2649 -2.8594 -1.5872 7 6 3.6805 -4.1465 -0.9227 8 8 3.2300 -4.4410 0.1642 9 7 4.5536 -4.9700 -1.5358 10 6 4.9314 -6.1413 -0.9316 11 1 4.5296 -6.4039 0.0358 12 6 5.8312 -6.9905 -1.5641 13 7 6.3197 -6.6713 -2.7414 14 14 6.3464 -8.5861 -0.7404 15 1 5.1494 -9.4355 -0.5145 16 1 7.3064 -9.3068 -1.6146 17 1 6.9925 -8.2846 0.5623 18 6 2.8808 -1.9422 0.6355 19 6 2.0659 -0.7705 1.2241 20 1 2.7068 -0.1263 1.8262 21 7 0.9544 -1.2784 2.0322 22 6 1.1340 -1.5275 3.3445 23 8 2.2186 -1.3302 3.8580 24 6 0.0181 -2.0380 4.1557 25 6 0.0940 -2.3190 5.4495 26 6 -1.2348 -2.8180 5.9680 27 6 -2.2614 -2.4128 4.8857 28 6 -1.3690 -2.3203 3.6268 29 1 -0.3633 0.4794 0.9090 30 1 -0.3634 0.5473 -0.8696 31 1 -0.3633 -1.0270 -0.0391 32 1 3.1517 1.4175 -0.0392 33 1 1.6758 1.9655 -0.8697 34 1 1.7394 1.9418 0.9090 35 1 1.3212 -0.7858 -2.0210 36 1 2.9940 -0.3225 -1.5805 37 1 2.7906 -3.0807 -2.5433 38 1 4.1434 -2.2358 -1.7530 39 1 4.9143 -4.7344 -2.4049 40 1 6.9476 -7.2643 -3.1831 41 1 3.9361 -1.6771 0.5717 42 1 2.7491 -2.8389 1.2411 43 1 0.0903 -1.4393 1.6218 44 1 0.9833 -2.2039 6.0513 45 1 -1.4773 -2.3420 6.9181 46 1 -1.2120 -3.9018 6.0825 47 1 -2.7120 -1.4477 5.1170 48 1 -3.0265 -3.1799 4.7660 49 1 -1.7031 -1.5056 2.9843 50 1 -1.3820 -3.2632 3.0802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717577911.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:12 Heat of formation + Delta-G solvation = -48.170954 kcal Electronic energy + Delta-G solvation = -29885.840526 eV Core-core repulsion = 25913.131038 eV Total energy + Delta-G solvation = -3972.709489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.52682 -39.26539 -38.03569 -37.41709 -34.63980 -33.80888 -33.15338 -31.25327 -29.93355 -29.01116 -28.32943 -27.62781 -26.98790 -25.05326 -23.83151 -22.37366 -21.27190 -20.55503 -19.62206 -18.98086 -18.48786 -17.79492 -17.27366 -16.44465 -15.83971 -15.62813 -15.35946 -15.25577 -14.55306 -14.50107 -14.29677 -13.95383 -13.78768 -13.47565 -13.30867 -13.09728 -12.92781 -12.76945 -12.48211 -12.37669 -12.10937 -12.07051 -11.81282 -11.67767 -11.52470 -11.49110 -11.41680 -11.38741 -11.29301 -11.00973 -10.91638 -10.67947 -10.65123 -10.40910 -10.19808 -9.76680 -9.46664 -9.09515 -8.80176 -8.38103 -8.01166 -7.89900 -6.40377 -3.81052 1.37475 3.21438 3.26810 3.29256 3.31631 3.43978 3.91450 4.09157 4.30273 4.32451 4.37063 4.41859 4.65078 4.75782 4.84144 4.92447 5.06395 5.12433 5.22987 5.26640 5.32934 5.43015 5.45230 5.50527 5.53084 5.56392 5.59438 5.60855 5.63918 5.73339 5.74857 5.80025 5.84587 5.91089 5.95250 5.99349 6.04164 6.10753 6.18459 6.23162 6.28536 6.43865 6.58316 6.77598 7.19628 7.28796 7.56642 7.68033 8.07393 8.38620 8.63220 9.19505 9.55292 10.07413 10.77329 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010236 B = 0.003224 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.804062 B = 8682.737586 C =10685.779785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 C -0.138 4.138 4 C 0.036 3.964 5 N -0.486 5.486 6 C 0.034 3.966 7 C 0.442 3.558 8 O -0.578 6.578 9 N -0.562 5.562 10 C -0.299 4.299 11 H 0.102 0.898 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.026 3.974 19 C 0.147 3.853 20 H 0.093 0.907 21 N -0.707 5.707 22 C 0.564 3.436 23 O -0.545 6.545 24 C -0.189 4.189 25 C -0.079 4.079 26 C -0.107 4.107 27 C -0.122 4.122 28 C -0.092 4.092 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.042 0.958 42 H 0.121 0.879 43 H 0.403 0.597 44 H 0.137 0.863 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.692 15.047 7.078 22.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 C -0.195 4.195 4 C -0.093 4.093 5 N -0.210 5.210 6 C -0.098 4.098 7 C 0.227 3.773 8 O -0.463 6.463 9 N -0.199 5.199 10 C -0.428 4.428 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.102 4.102 19 C 0.041 3.959 20 H 0.111 0.889 21 N -0.360 5.360 22 C 0.352 3.648 23 O -0.424 6.424 24 C -0.192 4.192 25 C -0.099 4.099 26 C -0.144 4.144 27 C -0.160 4.160 28 C -0.129 4.129 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.138 0.862 43 H 0.241 0.759 44 H 0.155 0.845 45 H 0.096 0.904 46 H 0.104 0.896 47 H 0.090 0.910 48 H 0.095 0.905 49 H 0.090 0.910 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.568 14.543 8.020 22.764 hybrid contribution 1.119 -0.385 -0.671 1.361 sum -14.449 14.159 7.349 21.523 Atomic orbital electron populations 1.21804 0.93831 1.02211 1.01807 1.21547 0.96502 0.95108 0.94470 1.21876 1.01097 0.94573 1.01987 1.23344 1.00042 0.89340 0.96552 1.65257 1.40796 1.12833 1.02087 1.22093 0.94822 0.95485 0.97390 1.19718 0.83724 0.86292 0.87560 1.90468 1.58207 1.75764 1.21838 1.41837 1.38955 1.19019 1.20052 1.19652 1.23272 0.95804 1.04109 0.87990 1.25250 0.96845 0.99858 0.95916 1.69598 1.31689 1.38591 1.14497 0.85927 0.78455 0.81097 0.78811 1.19884 1.20966 1.19890 1.23751 0.95457 0.99718 0.91290 1.21840 0.88199 0.94880 0.90988 0.88859 1.46061 1.15029 1.66369 1.08518 1.17979 0.87470 0.77373 0.81967 1.90787 1.26311 1.52788 1.72484 1.21848 0.95868 1.05656 0.95811 1.24012 0.98521 0.92316 0.95020 1.21471 0.92059 1.01632 0.99195 1.22417 0.97297 1.01933 0.94314 1.21263 0.91032 1.02330 0.98292 0.92388 0.92102 0.91572 0.92322 0.92123 0.92351 0.89953 0.93645 0.89147 0.93297 0.77487 0.91827 0.93969 0.86162 0.75930 0.84510 0.90380 0.89636 0.90956 0.90526 0.91035 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 7.10 37.16 0.26 -1.00 16 2 C -0.08 -0.83 1.03 -153.12 -0.16 -0.99 16 3 C -0.14 -1.27 8.25 37.16 0.31 -0.97 16 4 C 0.04 0.44 5.58 -2.18 -0.01 0.43 16 5 N -0.49 -8.12 5.34 -231.40 -1.23 -9.36 16 6 C 0.03 0.62 5.55 -4.98 -0.03 0.59 16 7 C 0.44 10.60 7.50 -10.99 -0.08 10.51 16 8 O -0.58 -15.75 13.24 5.55 0.07 -15.68 16 9 N -0.56 -14.48 5.29 -10.96 -0.06 -14.54 16 10 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 11 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 12 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 13 N -0.90 -24.85 13.05 55.50 0.72 -24.13 16 14 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 C 0.03 0.47 5.03 -2.18 -0.01 0.46 16 19 C 0.15 2.10 3.03 -66.55 -0.20 1.90 16 20 H 0.09 1.42 7.13 -51.93 -0.37 1.05 16 21 N -0.71 -9.65 4.51 -53.64 -0.24 -9.89 16 22 C 0.56 8.76 7.79 -12.66 -0.10 8.66 16 23 O -0.54 -10.52 16.42 5.26 0.09 -10.43 16 24 C -0.19 -2.34 6.09 -102.73 -0.63 -2.96 16 25 C -0.08 -0.88 10.43 -36.01 -0.38 -1.26 16 26 C -0.11 -0.85 6.80 -26.85 -0.18 -1.03 16 27 C -0.12 -0.89 7.17 -25.07 -0.18 -1.07 16 28 C -0.09 -0.84 6.02 -26.85 -0.16 -1.01 16 29 H 0.06 0.48 7.75 -51.93 -0.40 0.08 16 30 H 0.06 0.47 8.14 -51.94 -0.42 0.05 16 31 H 0.07 0.65 6.97 -51.93 -0.36 0.29 16 32 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.92 7.86 -51.93 -0.41 0.51 16 36 H 0.05 0.55 7.51 -51.93 -0.39 0.16 16 37 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.05 0.82 7.88 -51.93 -0.41 0.41 16 39 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 40 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.04 0.79 8.00 -51.93 -0.42 0.38 16 42 H 0.12 2.72 5.96 -51.93 -0.31 2.41 16 43 H 0.40 4.66 4.92 -40.82 -0.20 4.46 16 44 H 0.14 1.58 8.03 -52.49 -0.42 1.16 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.47 8.14 -51.92 -0.42 0.04 16 49 H 0.07 0.55 7.83 -51.93 -0.41 0.15 16 50 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 395.86 15.07 5.97 5.97 Total: -1.00 -33.54 395.86 -9.65 -43.19 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -8.15 Total: 14.27 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -1.79 Total: 4.19 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.81 Total: -57.91 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: 0.16 Total: -26.11 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.54 -9.65 -43.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717577911.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.976 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds