Wall clock time and date at job start Tue Mar 31 2020 19:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 110.36950 * 2 1 4 4 C 1.54384 * 110.32331 * 237.82332 * 2 1 3 5 5 N 1.48559 * 104.59487 * 264.95578 * 4 2 1 6 6 C 1.46900 * 111.00078 * 200.95638 * 5 4 2 7 7 C 1.50698 * 109.47204 * 170.00014 * 6 5 4 8 8 O 1.21294 * 119.99967 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00110 * 180.02562 * 7 6 5 10 10 C 1.37100 * 120.00298 * 180.02562 * 9 7 6 11 11 H 1.07999 * 119.99952 * 359.97438 * 10 9 7 12 12 C 1.38951 * 119.99944 * 179.97438 * 10 9 7 13 13 N 1.31401 * 120.00403 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99761 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46767 * 59.99731 * 14 12 10 16 16 H 1.48496 * 109.46813 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47013 * 300.00248 * 14 12 10 18 18 C 1.48561 * 104.22152 * 320.51277 * 5 4 2 19 19 C 1.54255 * 110.32922 * 122.18844 * 2 1 3 20 20 H 1.09005 * 110.32480 * 237.89766 * 19 2 1 21 21 N 1.46506 * 110.32236 * 359.97438 * 19 2 1 22 22 C 1.34773 * 119.99969 * 204.72478 * 21 19 2 23 23 O 1.21617 * 120.00330 * 0.02562 * 22 21 19 24 24 C 1.47106 * 120.00040 * 180.02562 * 22 21 19 25 25 C 1.32608 * 124.62154 * 179.70138 * 24 22 21 26 26 C 1.51118 * 110.75836 * 179.84161 * 25 24 22 27 27 C 1.54576 * 104.89925 * 343.80754 * 26 25 24 28 28 C 1.51112 * 124.61717 * 0.02562 * 24 22 21 29 29 H 1.09002 * 109.46971 * 297.80925 * 1 2 3 30 30 H 1.08989 * 109.47693 * 57.81423 * 1 2 3 31 31 H 1.09005 * 109.47024 * 177.82112 * 1 2 3 32 32 H 1.09000 * 109.47243 * 182.18396 * 3 2 1 33 33 H 1.08997 * 109.46992 * 302.18689 * 3 2 1 34 34 H 1.09005 * 109.46551 * 62.18598 * 3 2 1 35 35 H 1.09005 * 110.40902 * 23.73066 * 4 2 1 36 36 H 1.08997 * 110.41445 * 146.17049 * 4 2 1 37 37 H 1.09004 * 109.47204 * 289.99818 * 6 5 4 38 38 H 1.09007 * 109.46821 * 49.99685 * 6 5 4 39 39 H 0.96999 * 120.00302 * 359.97438 * 9 7 6 40 40 H 0.97001 * 120.00747 * 180.02562 * 13 12 10 41 41 H 1.08995 * 110.41200 * 280.70563 * 18 5 4 42 42 H 1.09004 * 110.40846 * 158.26099 * 18 5 4 43 43 H 0.97005 * 119.99811 * 25.00531 * 21 19 2 44 44 H 1.07998 * 124.62360 * 0.02562 * 25 24 22 45 45 H 1.08992 * 110.51789 * 224.85011 * 26 25 24 46 46 H 1.09004 * 110.24125 * 102.61884 * 26 25 24 47 47 H 1.08993 * 110.98444 * 266.70505 * 27 26 25 48 48 H 1.09007 * 111.01327 * 142.92153 * 27 26 25 49 49 H 1.09003 * 110.36972 * 315.43716 * 28 24 22 50 50 H 1.08998 * 110.36803 * 77.64819 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0626 1.4344 0.0000 4 6 2.0662 -0.7710 -1.2254 5 7 2.3147 -2.1467 -0.7227 6 6 3.2649 -2.8594 -1.5872 7 6 3.6805 -4.1465 -0.9227 8 8 3.2300 -4.4410 0.1642 9 7 4.5536 -4.9700 -1.5358 10 6 4.9314 -6.1413 -0.9316 11 1 4.5296 -6.4039 0.0358 12 6 5.8312 -6.9905 -1.5641 13 7 6.3197 -6.6713 -2.7414 14 14 6.3464 -8.5861 -0.7404 15 1 5.1494 -9.4355 -0.5145 16 1 7.3064 -9.3068 -1.6146 17 1 6.9925 -8.2846 0.5623 18 6 2.8808 -1.9422 0.6355 19 6 2.0659 -0.7705 1.2241 20 1 2.7068 -0.1263 1.8262 21 7 0.9544 -1.2784 2.0322 22 6 1.1340 -1.5275 3.3445 23 8 2.2186 -1.3302 3.8580 24 6 0.0181 -2.0380 4.1557 25 6 0.0940 -2.3190 5.4495 26 6 -1.2348 -2.8180 5.9680 27 6 -2.2614 -2.4128 4.8857 28 6 -1.3690 -2.3203 3.6268 29 1 -0.3633 0.4794 0.9090 30 1 -0.3634 0.5473 -0.8696 31 1 -0.3633 -1.0270 -0.0391 32 1 3.1517 1.4175 -0.0392 33 1 1.6758 1.9655 -0.8697 34 1 1.7394 1.9418 0.9090 35 1 1.3212 -0.7858 -2.0210 36 1 2.9940 -0.3225 -1.5805 37 1 2.7906 -3.0807 -2.5433 38 1 4.1434 -2.2358 -1.7530 39 1 4.9143 -4.7344 -2.4049 40 1 6.9476 -7.2643 -3.1831 41 1 3.9361 -1.6771 0.5717 42 1 2.7491 -2.8389 1.2411 43 1 0.0903 -1.4393 1.6218 44 1 0.9833 -2.2039 6.0513 45 1 -1.4773 -2.3420 6.9181 46 1 -1.2120 -3.9018 6.0825 47 1 -2.7120 -1.4477 5.1170 48 1 -3.0265 -3.1799 4.7660 49 1 -1.7031 -1.5056 2.9843 50 1 -1.3820 -3.2632 3.0802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717577911.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:11 Heat of formation + Delta-G solvation = -72.658162 kcal Electronic energy + Delta-G solvation = -29886.902371 eV Core-core repulsion = 25913.131038 eV Total energy + Delta-G solvation = -3973.771334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.70941 -40.53850 -39.62385 -38.48253 -36.24852 -35.55431 -34.30261 -33.33150 -30.98180 -30.02398 -29.28050 -28.65113 -28.01371 -26.74973 -25.21609 -23.57181 -22.29602 -21.46969 -21.16425 -20.43643 -19.85671 -19.47251 -18.24538 -17.79635 -17.39063 -16.71787 -16.55112 -16.51028 -16.36208 -15.88707 -15.69949 -15.35411 -15.16139 -14.83533 -14.51532 -14.06394 -13.96133 -13.84222 -13.60347 -13.52936 -13.35219 -13.19363 -13.03618 -12.91695 -12.78435 -12.66032 -12.60824 -12.51657 -12.45051 -12.16158 -12.06021 -12.00337 -11.88151 -11.72422 -11.60659 -11.49318 -11.00363 -10.29307 -10.13392 -10.03293 -9.80724 -9.42602 -8.50077 -5.98849 0.37059 1.36031 1.37729 1.48891 2.00919 2.16168 2.25628 2.32501 2.82866 3.15975 3.23976 3.47891 3.54276 3.62233 3.64807 3.97180 4.08209 4.16928 4.21139 4.24184 4.30207 4.31300 4.37631 4.45184 4.48565 4.62523 4.72915 4.78433 4.79095 4.81855 4.84811 4.87915 4.97468 4.97794 5.02869 5.09161 5.18047 5.22400 5.31358 5.35327 5.37051 5.38887 5.41661 5.49830 5.53151 5.78591 5.88915 6.06649 6.55737 6.57324 7.09453 7.21676 7.51784 8.08695 8.67225 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010236 B = 0.003224 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.804062 B = 8682.737586 C =10685.779785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.065 4.065 3 C -0.134 4.134 4 C 0.036 3.964 5 N -0.494 5.494 6 C 0.045 3.955 7 C 0.436 3.564 8 O -0.616 6.616 9 N -0.572 5.572 10 C -0.335 4.335 11 H 0.075 0.925 12 C -0.011 4.011 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.271 1.271 16 H -0.267 1.267 17 H -0.275 1.275 18 C 0.031 3.969 19 C 0.150 3.850 20 H 0.080 0.920 21 N -0.695 5.695 22 C 0.553 3.447 23 O -0.597 6.597 24 C -0.215 4.215 25 C -0.076 4.076 26 C -0.104 4.104 27 C -0.114 4.114 28 C -0.089 4.089 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.107 0.893 36 H 0.055 0.945 37 H 0.117 0.883 38 H 0.067 0.933 39 H 0.396 0.604 40 H 0.279 0.721 41 H 0.023 0.977 42 H 0.068 0.932 43 H 0.414 0.586 44 H 0.123 0.877 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.094 0.906 49 H 0.087 0.913 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.957 16.199 6.109 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.066 4.066 3 C -0.191 4.191 4 C -0.092 4.092 5 N -0.219 5.219 6 C -0.087 4.087 7 C 0.224 3.776 8 O -0.502 6.502 9 N -0.209 5.209 10 C -0.464 4.464 11 H 0.093 0.907 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.196 1.196 16 H -0.191 1.191 17 H -0.200 1.200 18 C -0.098 4.098 19 C 0.043 3.957 20 H 0.098 0.902 21 N -0.348 5.348 22 C 0.343 3.657 23 O -0.479 6.479 24 C -0.218 4.218 25 C -0.096 4.096 26 C -0.140 4.140 27 C -0.151 4.151 28 C -0.126 4.126 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.126 0.874 36 H 0.074 0.926 37 H 0.135 0.865 38 H 0.085 0.915 39 H 0.230 0.770 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.087 0.913 43 H 0.254 0.746 44 H 0.141 0.859 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.105 0.895 48 H 0.112 0.888 49 H 0.105 0.895 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.868 15.716 7.000 24.805 hybrid contribution 1.857 -0.726 -0.329 2.021 sum -16.011 14.989 6.672 22.925 Atomic orbital electron populations 1.21810 0.91826 1.02261 1.03506 1.21565 0.98046 0.95491 0.91538 1.21861 1.00726 0.93206 1.03346 1.23519 1.01328 0.86690 0.97617 1.65228 1.39750 1.15685 1.01218 1.22012 0.96233 0.92670 0.97749 1.20803 0.82249 0.87547 0.87023 1.90471 1.59135 1.77002 1.23624 1.41898 1.39767 1.18936 1.20306 1.19590 1.25068 0.97796 1.03987 0.90670 1.26014 0.96115 1.02530 0.96413 1.69653 1.31645 1.39623 1.15069 0.85022 0.78297 0.77261 0.77953 1.19599 1.19112 1.20022 1.23468 0.95317 0.98914 0.92108 1.21765 0.88200 0.93508 0.92181 0.90226 1.46006 1.15277 1.65481 1.08023 1.18645 0.87744 0.76656 0.82659 1.90745 1.28512 1.55189 1.73502 1.21980 0.96631 1.07102 0.96122 1.24350 0.99788 0.90747 0.94724 1.21550 0.90086 1.02029 1.00353 1.22444 0.96908 1.03331 0.92452 1.21301 0.89286 1.02480 0.99523 0.91504 0.89570 0.92388 0.93024 0.89593 0.92026 0.87437 0.92634 0.86484 0.91487 0.76977 0.91195 0.95889 0.91344 0.74565 0.85925 0.88286 0.88933 0.89534 0.88755 0.89478 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 7.10 71.98 0.51 -1.56 16 2 C -0.07 -1.32 1.03 -51.29 -0.05 -1.37 16 3 C -0.13 -2.13 8.25 71.98 0.59 -1.54 16 4 C 0.04 0.81 5.58 86.45 0.48 1.29 16 5 N -0.49 -16.39 5.34 -886.02 -4.73 -21.12 16 6 C 0.04 1.61 5.55 85.56 0.47 2.09 16 7 C 0.44 21.70 7.50 87.66 0.66 22.36 16 8 O -0.62 -35.54 13.24 -3.07 -0.04 -35.58 16 9 N -0.57 -30.42 5.29 -306.99 -1.62 -32.05 16 10 C -0.33 -19.69 9.68 84.04 0.81 -18.88 16 11 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 12 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 13 N -0.92 -50.61 13.05 21.66 0.28 -50.33 16 14 Si 0.99 44.25 29.55 68.60 2.03 46.27 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 18 C 0.03 1.19 5.03 86.45 0.43 1.62 16 19 C 0.15 4.40 3.03 45.88 0.14 4.54 16 20 H 0.08 2.56 7.13 -2.38 -0.02 2.55 16 21 N -0.70 -19.57 4.51 -441.88 -1.99 -21.56 16 22 C 0.55 18.23 7.79 86.57 0.67 18.90 16 23 O -0.60 -24.98 16.42 -4.09 -0.07 -25.04 16 24 C -0.22 -5.46 6.09 -18.56 -0.11 -5.58 16 25 C -0.08 -1.73 10.43 24.66 0.26 -1.48 16 26 C -0.10 -1.47 6.80 30.52 0.21 -1.26 16 27 C -0.11 -1.36 7.17 31.67 0.23 -1.13 16 28 C -0.09 -1.52 6.02 30.52 0.18 -1.34 16 29 H 0.07 0.92 7.75 -2.39 -0.02 0.90 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.99 6.97 -2.38 -0.02 0.98 16 32 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 33 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.11 1.95 7.86 -2.38 -0.02 1.94 16 36 H 0.06 1.18 7.51 -2.39 -0.02 1.16 16 37 H 0.12 3.63 8.14 -2.38 -0.02 3.61 16 38 H 0.07 2.19 7.88 -2.38 -0.02 2.17 16 39 H 0.40 19.92 7.90 -92.71 -0.73 19.19 16 40 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 41 H 0.02 0.93 8.00 -2.39 -0.02 0.91 16 42 H 0.07 3.36 5.96 -2.39 -0.01 3.35 16 43 H 0.41 9.48 4.92 -92.70 -0.46 9.02 16 44 H 0.12 3.05 8.03 -2.91 -0.02 3.03 16 45 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 47 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 49 H 0.09 1.18 7.83 -2.39 -0.02 1.16 16 50 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -78.43 395.86 -0.42 -78.84 By element: Atomic # 1 Polarization: 44.25 SS G_CDS: -0.24 Total: 44.02 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 5.96 Total: 16.55 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -8.06 Total: -125.05 kcal Atomic # 8 Polarization: -60.52 SS G_CDS: -0.11 Total: -60.63 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -78.43 -0.42 -78.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717577911.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.186 kcal (2) G-P(sol) polarization free energy of solvation -78.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds