Wall clock time and date at job start Tue Mar 31 2020 19:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34259 * 126.52484 * 2 1 4 4 C 1.34044 * 108.23035 * 180.26285 * 3 2 1 5 5 C 1.50704 * 125.37986 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46685 * 299.97033 * 5 4 3 7 7 C 1.53000 * 109.47048 * 59.97125 * 5 4 3 8 8 N 1.29941 * 109.24268 * 359.97438 * 4 3 2 9 9 C 1.36062 * 108.47645 * 0.02562 * 8 4 3 10 10 C 1.47416 * 126.45058 * 179.97438 * 9 8 4 11 11 O 1.21615 * 120.00299 * 180.02562 * 10 9 8 12 12 N 1.34783 * 119.99866 * 0.04052 * 10 9 8 13 13 C 1.47017 * 125.64797 * 0.02562 * 12 10 9 14 14 C 1.54318 * 107.27391 * 181.02353 * 13 12 10 15 15 C 1.55155 * 102.94147 * 22.19205 * 14 13 12 16 16 C 1.52999 * 111.00455 * 82.57290 * 15 14 13 17 17 C 1.53004 * 111.00547 * 206.42546 * 15 14 13 18 18 N 1.46501 * 109.47016 * 179.97438 * 17 15 14 19 19 C 1.36938 * 120.00005 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99763 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00051 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00406 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99922 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47176 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47159 * 120.00485 * 23 21 19 26 26 H 1.48502 * 109.46841 * 240.00422 * 23 21 19 27 27 C 1.47423 * 125.64822 * 179.71622 * 12 10 9 28 28 H 1.08994 * 109.47275 * 269.68455 * 1 2 3 29 29 H 1.08997 * 109.47147 * 29.69383 * 1 2 3 30 30 H 1.09007 * 109.46747 * 149.68797 * 1 2 3 31 31 H 1.08997 * 109.47101 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.46787 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47131 * 300.00091 * 6 5 4 34 34 H 1.08997 * 109.46949 * 60.00395 * 6 5 4 35 35 H 1.08996 * 109.46950 * 60.00366 * 7 5 4 36 36 H 1.09000 * 109.46522 * 180.02562 * 7 5 4 37 37 H 1.08997 * 109.47039 * 299.99878 * 7 5 4 38 38 H 1.08998 * 109.88449 * 300.44286 * 13 12 10 39 39 H 1.09003 * 109.88197 * 61.60390 * 13 12 10 40 40 H 1.09001 * 110.72344 * 140.55468 * 14 13 12 41 41 H 1.09004 * 110.71974 * 263.65238 * 14 13 12 42 42 H 1.09000 * 109.47078 * 60.00340 * 16 15 14 43 43 H 1.09004 * 109.47113 * 180.02562 * 16 15 14 44 44 H 1.09004 * 109.47288 * 300.00359 * 16 15 14 45 45 H 1.09001 * 109.46895 * 299.99999 * 17 15 14 46 46 H 1.08995 * 109.47135 * 60.00334 * 17 15 14 47 47 H 0.96998 * 120.00008 * 0.02562 * 18 17 15 48 48 H 0.96995 * 120.00756 * 179.97438 * 22 21 19 49 49 H 1.08994 * 110.36798 * 274.74632 * 27 12 10 50 50 H 1.09003 * 110.36579 * 37.07205 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5787 0.6581 -0.0058 5 6 4.7929 1.5509 -0.0073 6 6 4.7724 2.4374 -1.2541 7 6 4.7806 2.4306 1.2444 8 7 3.6002 -0.6411 -0.0089 9 6 2.3170 -1.0936 -0.0056 10 6 1.8854 -2.5031 -0.0080 11 8 0.7003 -2.7762 -0.0050 12 7 2.8042 -3.4893 -0.0131 13 6 4.2623 -3.3018 -0.0162 14 6 4.9047 -4.7045 -0.0481 15 6 3.7735 -5.5915 -0.6322 16 6 3.7440 -5.5074 -2.1596 17 6 3.9187 -7.0420 -0.1677 18 7 2.8357 -7.8478 -0.7370 19 6 2.7592 -9.1864 -0.4587 20 1 3.4971 -9.6481 0.1808 21 6 1.7328 -9.9498 -0.9976 22 7 0.8333 -9.3872 -1.7765 23 14 1.6280 -11.7757 -0.6174 24 1 2.7501 -12.1605 0.2761 25 1 0.3371 -12.0678 0.0560 26 1 1.7133 -12.5502 -1.8816 27 6 2.5134 -4.9345 -0.0100 28 1 -0.3633 -0.0057 1.0276 29 1 -0.3633 0.8927 -0.5091 30 1 -0.3633 -0.8872 -0.5187 31 1 5.6943 0.9382 -0.0120 32 1 5.6508 3.0828 -1.2555 33 1 4.7811 1.8106 -2.1459 34 1 3.8709 3.0501 -1.2494 35 1 4.7952 1.7990 2.1325 36 1 5.6585 3.0766 1.2430 37 1 3.8791 3.0433 1.2490 38 1 4.5616 -2.7369 -0.8991 39 1 4.5701 -2.7735 0.8862 40 1 5.7779 -4.7141 -0.7004 41 1 5.1725 -5.0290 0.9574 42 1 4.6982 -5.8489 -2.5608 43 1 2.9417 -6.1380 -2.5428 44 1 3.5708 -4.4750 -2.4634 45 1 4.8789 -7.4358 -0.5010 46 1 3.8675 -7.0820 0.9203 47 1 2.1733 -7.4333 -1.3116 48 1 0.1162 -9.9206 -2.1534 49 1 2.3623 -5.2889 1.0096 50 1 1.6353 -5.1461 -0.6201 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724214927.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:56 Heat of formation + Delta-G solvation = -11.497406 kcal Electronic energy + Delta-G solvation = -29650.758488 eV Core-core repulsion = 25679.639284 eV Total energy + Delta-G solvation = -3971.119204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.66193 -39.97367 -37.92842 -36.17442 -35.05498 -34.62604 -32.58211 -32.14716 -30.42927 -29.02120 -27.84796 -27.71139 -26.49650 -25.55158 -24.05532 -23.13714 -22.56885 -21.84723 -21.06830 -19.12764 -18.74886 -17.54426 -17.17854 -16.84294 -16.35818 -15.88783 -15.40437 -15.31066 -14.67659 -14.57900 -14.25594 -13.96738 -13.80438 -13.61719 -13.53243 -13.20102 -13.09847 -12.85741 -12.78794 -12.69847 -12.56210 -12.13808 -12.03063 -11.94975 -11.81883 -11.60682 -11.60122 -11.53553 -11.35660 -10.97246 -10.85763 -10.81432 -10.42392 -10.33758 -10.23941 -9.98348 -9.87037 -9.57713 -9.00397 -8.84191 -8.38229 -6.87392 -5.71919 -3.00556 0.94291 1.86871 2.23367 3.02554 3.31381 3.46593 3.51889 3.54191 3.54387 4.28697 4.38308 4.51491 4.54301 4.62417 4.73416 4.83170 4.91667 5.00691 5.10336 5.12956 5.13568 5.27016 5.28258 5.33785 5.42481 5.48755 5.51721 5.63430 5.66912 5.68273 5.69435 5.75288 5.83528 5.86850 5.93174 6.01446 6.12078 6.16467 6.21464 6.27270 6.36406 6.43626 6.58596 6.70896 6.80516 6.90106 7.30911 7.64973 7.74605 8.21486 8.46712 9.58046 10.15672 10.50254 11.50962 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022156 B = 0.002440 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.461529 B =11473.073105 C =12252.924581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.037 3.963 3 O -0.195 6.195 4 C 0.193 3.807 5 C 0.004 3.996 6 C -0.150 4.150 7 C -0.150 4.150 8 N -0.451 5.451 9 C -0.067 4.067 10 C 0.611 3.389 11 O -0.535 6.535 12 N -0.598 5.598 13 C 0.118 3.882 14 C -0.125 4.125 15 C -0.078 4.078 16 C -0.129 4.129 17 C 0.170 3.830 18 N -0.731 5.731 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.122 3.878 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.044 0.956 45 H 0.025 0.975 46 H 0.021 0.979 47 H 0.385 0.615 48 H 0.254 0.746 49 H 0.073 0.927 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.973 27.695 3.528 29.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.019 4.019 3 O -0.082 6.082 4 C -0.016 4.016 5 C -0.015 4.015 6 C -0.208 4.208 7 C -0.208 4.208 8 N -0.180 5.180 9 C -0.187 4.187 10 C 0.398 3.602 11 O -0.413 6.413 12 N -0.330 5.330 13 C -0.005 4.005 14 C -0.164 4.164 15 C -0.079 4.079 16 C -0.186 4.186 17 C 0.042 3.958 18 N -0.376 5.376 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.000 4.000 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.042 0.958 46 H 0.039 0.961 47 H 0.220 0.780 48 H 0.064 0.936 49 H 0.091 0.909 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.868 27.067 3.597 28.709 hybrid contribution -0.806 -0.516 0.033 0.957 sum 8.062 26.551 3.629 27.985 Atomic orbital electron populations 1.20599 0.82501 1.05399 1.04697 1.23732 0.95083 0.83248 0.99884 1.84277 1.17948 1.36229 1.69774 1.26201 0.84046 0.90260 1.01078 1.19760 0.89869 0.94258 0.97612 1.21900 1.03139 0.99514 0.96272 1.21898 1.03150 0.99553 0.96203 1.70881 1.21603 1.08547 1.16969 1.21460 0.88773 0.95465 1.13016 1.16292 0.84695 0.81934 0.77265 1.90807 1.15766 1.82917 1.51830 1.48254 1.07025 1.06717 1.71030 1.22003 0.79122 0.97147 1.02244 1.22780 0.98027 0.93590 1.01963 1.21993 0.93505 0.96085 0.96285 1.21664 1.02763 1.00804 0.93408 1.20577 0.92593 0.86879 0.95769 1.42422 1.30012 1.06325 1.58836 1.19257 1.08469 0.84937 1.24255 0.91161 1.24736 0.97880 0.98092 1.00307 1.69664 1.16483 1.34932 1.37002 0.86130 0.77277 0.85512 0.77344 1.20605 1.21926 1.21943 1.22440 0.98919 0.77071 1.01525 0.89049 0.90256 0.86784 0.86722 0.90768 0.91832 0.91846 0.91869 0.90767 0.91851 0.91066 0.91319 0.90053 0.90530 0.92552 0.91031 0.93684 0.95769 0.96080 0.78030 0.93566 0.90905 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 9.87 36.00 0.36 -0.39 16 2 C 0.04 0.46 7.44 -35.08 -0.26 0.20 16 3 O -0.20 -2.18 10.73 6.52 0.07 -2.11 16 4 C 0.19 2.04 6.81 -13.08 -0.09 1.95 16 5 C 0.00 0.03 3.39 -91.77 -0.31 -0.28 16 6 C -0.15 -0.79 9.18 37.16 0.34 -0.45 16 7 C -0.15 -0.78 9.18 37.16 0.34 -0.44 16 8 N -0.45 -5.83 8.84 -7.65 -0.07 -5.90 16 9 C -0.07 -0.98 6.83 -83.02 -0.57 -1.54 16 10 C 0.61 10.36 7.85 -12.52 -0.10 10.26 16 11 O -0.54 -10.27 15.06 5.26 0.08 -10.19 16 12 N -0.60 -9.68 3.31 -171.65 -0.57 -10.25 16 13 C 0.12 1.58 5.20 -3.07 -0.02 1.56 16 14 C -0.13 -1.63 5.91 -24.90 -0.15 -1.78 16 15 C -0.08 -1.28 0.63 -152.24 -0.10 -1.38 16 16 C -0.13 -2.15 8.42 37.16 0.31 -1.84 16 17 C 0.17 3.39 5.25 -4.04 -0.02 3.37 16 18 N -0.73 -18.45 5.18 -59.91 -0.31 -18.76 16 19 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 20 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 23 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 C 0.12 2.17 5.62 -2.41 -0.01 2.16 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.11 1.33 6.49 -51.92 -0.34 0.99 16 31 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.94 7.63 -51.93 -0.40 0.55 16 39 H 0.07 0.88 7.75 -51.93 -0.40 0.48 16 40 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 41 H 0.08 0.94 8.04 -51.93 -0.42 0.53 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 1.39 6.65 -51.93 -0.35 1.05 16 44 H 0.04 0.70 7.91 -51.93 -0.41 0.29 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.02 0.43 8.07 -51.93 -0.42 0.01 16 47 H 0.38 10.27 6.23 -40.82 -0.25 10.01 16 48 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 49 H 0.07 1.34 7.99 -51.93 -0.41 0.93 16 50 H 0.08 1.73 7.95 -51.93 -0.41 1.31 16 LS Contribution 402.58 15.07 6.07 6.07 Total: -1.00 -33.55 402.58 -7.97 -41.52 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -8.42 Total: 5.76 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -0.52 Total: 4.04 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: -0.22 Total: -62.78 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.15 Total: -12.30 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.55 -7.97 -41.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724214927.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.026 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds