Wall clock time and date at job start Tue Mar 31 2020 19:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34259 * 126.52484 * 2 1 4 4 C 1.34044 * 108.23035 * 180.26285 * 3 2 1 5 5 C 1.50704 * 125.37986 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46685 * 299.97033 * 5 4 3 7 7 C 1.53000 * 109.47048 * 59.97125 * 5 4 3 8 8 N 1.29941 * 109.24268 * 359.97438 * 4 3 2 9 9 C 1.36062 * 108.47645 * 0.02562 * 8 4 3 10 10 C 1.47416 * 126.45058 * 179.97438 * 9 8 4 11 11 O 1.21615 * 120.00299 * 180.02562 * 10 9 8 12 12 N 1.34783 * 119.99866 * 0.04052 * 10 9 8 13 13 C 1.47017 * 125.64797 * 0.02562 * 12 10 9 14 14 C 1.54318 * 107.27391 * 181.02353 * 13 12 10 15 15 C 1.55155 * 102.94147 * 22.19205 * 14 13 12 16 16 C 1.52999 * 111.00455 * 82.57290 * 15 14 13 17 17 C 1.53004 * 111.00547 * 206.42546 * 15 14 13 18 18 N 1.46501 * 109.47016 * 179.97438 * 17 15 14 19 19 C 1.36938 * 120.00005 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99763 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00051 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00406 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99922 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47176 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47159 * 120.00485 * 23 21 19 26 26 H 1.48502 * 109.46841 * 240.00422 * 23 21 19 27 27 C 1.47423 * 125.64822 * 179.71622 * 12 10 9 28 28 H 1.08994 * 109.47275 * 269.68455 * 1 2 3 29 29 H 1.08997 * 109.47147 * 29.69383 * 1 2 3 30 30 H 1.09007 * 109.46747 * 149.68797 * 1 2 3 31 31 H 1.08997 * 109.47101 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.46787 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47131 * 300.00091 * 6 5 4 34 34 H 1.08997 * 109.46949 * 60.00395 * 6 5 4 35 35 H 1.08996 * 109.46950 * 60.00366 * 7 5 4 36 36 H 1.09000 * 109.46522 * 180.02562 * 7 5 4 37 37 H 1.08997 * 109.47039 * 299.99878 * 7 5 4 38 38 H 1.08998 * 109.88449 * 300.44286 * 13 12 10 39 39 H 1.09003 * 109.88197 * 61.60390 * 13 12 10 40 40 H 1.09001 * 110.72344 * 140.55468 * 14 13 12 41 41 H 1.09004 * 110.71974 * 263.65238 * 14 13 12 42 42 H 1.09000 * 109.47078 * 60.00340 * 16 15 14 43 43 H 1.09004 * 109.47113 * 180.02562 * 16 15 14 44 44 H 1.09004 * 109.47288 * 300.00359 * 16 15 14 45 45 H 1.09001 * 109.46895 * 299.99999 * 17 15 14 46 46 H 1.08995 * 109.47135 * 60.00334 * 17 15 14 47 47 H 0.96998 * 120.00008 * 0.02562 * 18 17 15 48 48 H 0.96995 * 120.00756 * 179.97438 * 22 21 19 49 49 H 1.08994 * 110.36798 * 274.74632 * 27 12 10 50 50 H 1.09003 * 110.36579 * 37.07205 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5787 0.6581 -0.0058 5 6 4.7929 1.5509 -0.0073 6 6 4.7724 2.4374 -1.2541 7 6 4.7806 2.4306 1.2444 8 7 3.6002 -0.6411 -0.0089 9 6 2.3170 -1.0936 -0.0056 10 6 1.8854 -2.5031 -0.0080 11 8 0.7003 -2.7762 -0.0050 12 7 2.8042 -3.4893 -0.0131 13 6 4.2623 -3.3018 -0.0162 14 6 4.9047 -4.7045 -0.0481 15 6 3.7735 -5.5915 -0.6322 16 6 3.7440 -5.5074 -2.1596 17 6 3.9187 -7.0420 -0.1677 18 7 2.8357 -7.8478 -0.7370 19 6 2.7592 -9.1864 -0.4587 20 1 3.4971 -9.6481 0.1808 21 6 1.7328 -9.9498 -0.9976 22 7 0.8333 -9.3872 -1.7765 23 14 1.6280 -11.7757 -0.6174 24 1 2.7501 -12.1605 0.2761 25 1 0.3371 -12.0678 0.0560 26 1 1.7133 -12.5502 -1.8816 27 6 2.5134 -4.9345 -0.0100 28 1 -0.3633 -0.0057 1.0276 29 1 -0.3633 0.8927 -0.5091 30 1 -0.3633 -0.8872 -0.5187 31 1 5.6943 0.9382 -0.0120 32 1 5.6508 3.0828 -1.2555 33 1 4.7811 1.8106 -2.1459 34 1 3.8709 3.0501 -1.2494 35 1 4.7952 1.7990 2.1325 36 1 5.6585 3.0766 1.2430 37 1 3.8791 3.0433 1.2490 38 1 4.5616 -2.7369 -0.8991 39 1 4.5701 -2.7735 0.8862 40 1 5.7779 -4.7141 -0.7004 41 1 5.1725 -5.0290 0.9574 42 1 4.6982 -5.8489 -2.5608 43 1 2.9417 -6.1380 -2.5428 44 1 3.5708 -4.4750 -2.4634 45 1 4.8789 -7.4358 -0.5010 46 1 3.8675 -7.0820 0.9203 47 1 2.1733 -7.4333 -1.3116 48 1 0.1162 -9.9206 -2.1534 49 1 2.3623 -5.2889 1.0096 50 1 1.6353 -5.1461 -0.6201 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724214927.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:55 Heat of formation + Delta-G solvation = -33.886336 kcal Electronic energy + Delta-G solvation = -29651.729345 eV Core-core repulsion = 25679.639284 eV Total energy + Delta-G solvation = -3972.090061 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.58120 -41.28678 -39.29715 -36.77629 -36.51740 -35.85461 -34.28516 -33.00283 -32.23627 -30.38204 -28.94168 -28.09343 -27.85165 -27.11368 -25.43608 -24.42859 -23.45791 -23.26269 -21.96950 -20.28604 -20.10083 -19.23827 -18.31930 -18.10104 -17.30888 -17.13176 -16.62351 -16.48296 -16.16367 -15.62262 -15.55118 -15.23565 -15.18277 -14.76084 -14.57665 -14.48923 -14.32483 -13.92984 -13.80271 -13.66518 -13.53242 -13.39169 -13.04302 -13.02477 -12.93425 -12.84395 -12.73041 -12.58072 -12.48067 -12.13649 -12.10021 -12.07688 -11.97288 -11.87127 -11.71851 -11.50960 -11.36568 -11.24859 -10.94174 -10.02850 -9.62464 -8.97257 -7.93099 -5.21626 -0.05606 0.90423 1.36032 1.47255 1.48470 1.58430 1.81631 2.10450 2.56813 2.69609 3.27509 3.41000 3.50361 3.59404 3.64142 3.83647 3.91335 4.06651 4.12181 4.14025 4.22955 4.28600 4.35661 4.36542 4.38705 4.50344 4.63664 4.72995 4.76735 4.77047 4.77259 4.85590 4.89890 4.91582 4.94428 4.98444 5.03920 5.06503 5.08612 5.11792 5.14962 5.28372 5.29719 5.31677 5.32892 5.45417 5.52074 6.28700 6.30366 6.45607 6.92303 7.35196 8.11724 8.34067 9.30907 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022156 B = 0.002440 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.461529 B =11473.073105 C =12252.924581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.043 3.957 3 O -0.191 6.191 4 C 0.204 3.796 5 C 0.004 3.996 6 C -0.147 4.147 7 C -0.146 4.146 8 N -0.469 5.469 9 C -0.097 4.097 10 C 0.603 3.397 11 O -0.571 6.571 12 N -0.600 5.600 13 C 0.123 3.877 14 C -0.111 4.111 15 C -0.070 4.070 16 C -0.120 4.120 17 C 0.169 3.831 18 N -0.744 5.744 19 C -0.239 4.239 20 H 0.079 0.921 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.973 3.027 24 H -0.263 1.263 25 H -0.297 1.297 26 H -0.294 1.294 27 C 0.127 3.873 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.126 0.874 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.034 0.966 44 H 0.053 0.947 45 H 0.036 0.964 46 H 0.025 0.975 47 H 0.374 0.626 48 H 0.249 0.751 49 H 0.061 0.939 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.719 29.622 4.296 32.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.014 4.014 3 O -0.079 6.079 4 C -0.006 4.006 5 C -0.015 4.015 6 C -0.205 4.205 7 C -0.204 4.204 8 N -0.197 5.197 9 C -0.216 4.216 10 C 0.392 3.608 11 O -0.451 6.451 12 N -0.331 5.331 13 C 0.001 3.999 14 C -0.149 4.149 15 C -0.071 4.071 16 C -0.178 4.178 17 C 0.042 3.958 18 N -0.387 5.387 19 C -0.371 4.371 20 H 0.097 0.903 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.803 3.197 24 H -0.187 1.187 25 H -0.224 1.224 26 H -0.221 1.221 27 C 0.005 3.995 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.111 0.889 31 H 0.144 0.856 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.127 0.873 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.072 0.928 45 H 0.054 0.946 46 H 0.042 0.958 47 H 0.206 0.794 48 H 0.058 0.942 49 H 0.080 0.920 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.687 29.004 4.392 31.577 hybrid contribution -1.611 -0.989 -0.178 1.898 sum 10.076 28.015 4.214 30.069 Atomic orbital electron populations 1.20654 0.81118 1.05755 1.05521 1.24078 0.95993 0.83035 0.98262 1.84318 1.18235 1.35592 1.69714 1.27164 0.84687 0.90167 0.98585 1.20084 0.88231 0.94234 0.98988 1.21901 1.04248 0.99324 0.94994 1.21897 1.04246 0.99363 0.94909 1.70825 1.20741 1.09718 1.18431 1.21193 0.90198 0.94443 1.15739 1.16720 0.84379 0.83122 0.76566 1.90775 1.17207 1.83726 1.53423 1.48325 1.08349 1.05708 1.70747 1.22107 0.77172 0.97555 1.03027 1.22790 0.97252 0.91837 1.03051 1.21861 0.94508 0.94601 0.96154 1.21560 1.02202 1.00551 0.93441 1.20740 0.91239 0.88189 0.95597 1.42651 1.31124 1.06102 1.58859 1.19693 1.07992 0.86244 1.23126 0.90305 1.25583 0.98058 1.02536 1.00983 1.69838 1.17336 1.36385 1.38767 0.85065 0.77312 0.80268 0.77076 1.18749 1.22431 1.22113 1.22198 0.98409 0.78742 1.00174 0.87858 0.87340 0.88897 0.85643 0.88247 0.92802 0.92124 0.92708 0.88259 0.92135 0.90462 0.90288 0.87291 0.89177 0.90848 0.94668 0.92825 0.94585 0.95752 0.79352 0.94170 0.92029 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.45 9.87 71.23 0.70 -0.74 16 2 C 0.04 1.06 7.44 25.19 0.19 1.25 16 3 O -0.19 -4.01 10.73 0.42 0.00 -4.00 16 4 C 0.20 3.96 6.81 88.39 0.60 4.56 16 5 C 0.00 0.04 3.39 -11.54 -0.04 0.00 16 6 C -0.15 -1.14 9.18 71.98 0.66 -0.48 16 7 C -0.15 -1.10 9.18 71.98 0.66 -0.44 16 8 N -0.47 -11.60 8.84 -293.04 -2.59 -14.19 16 9 C -0.10 -2.82 6.83 40.41 0.28 -2.55 16 10 C 0.60 21.19 7.85 86.66 0.68 21.87 16 11 O -0.57 -23.26 15.06 -4.08 -0.06 -23.32 16 12 N -0.60 -19.72 3.31 -815.23 -2.70 -22.41 16 13 C 0.12 3.10 5.20 86.73 0.45 3.55 16 14 C -0.11 -2.61 5.91 31.78 0.19 -2.42 16 15 C -0.07 -2.29 0.63 -50.71 -0.03 -2.32 16 16 C -0.12 -4.00 8.42 71.98 0.61 -3.40 16 17 C 0.17 6.65 5.25 86.38 0.45 7.10 16 18 N -0.74 -38.32 5.18 -343.44 -1.78 -40.10 16 19 C -0.24 -13.49 9.99 84.03 0.84 -12.65 16 20 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 21 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 22 N -0.97 -61.55 13.06 21.65 0.28 -61.26 16 23 Si 0.97 47.25 29.55 68.60 2.03 49.28 16 24 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 26 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 27 C 0.13 4.72 5.62 86.93 0.49 5.20 16 28 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 2.27 6.49 -2.38 -0.02 2.25 16 31 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.08 1.89 7.63 -2.39 -0.02 1.87 16 39 H 0.08 1.87 7.75 -2.39 -0.02 1.85 16 40 H 0.11 2.04 8.05 -2.39 -0.02 2.02 16 41 H 0.09 1.93 8.04 -2.39 -0.02 1.91 16 42 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.03 1.42 6.65 -2.39 -0.02 1.40 16 44 H 0.05 1.67 7.91 -2.39 -0.02 1.65 16 45 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.02 0.96 8.07 -2.39 -0.02 0.94 16 47 H 0.37 20.86 6.23 -92.71 -0.58 20.28 16 48 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 49 H 0.06 2.38 7.99 -2.39 -0.02 2.36 16 50 H 0.05 2.12 7.95 -2.39 -0.02 2.11 16 Total: -1.00 -75.28 402.58 2.73 -72.55 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.35 Total: 29.16 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 7.19 Total: 14.30 kcal Atomic # 7 Polarization: -131.18 SS G_CDS: -6.78 Total: -137.97 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.06 Total: -27.32 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -75.28 2.73 -72.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724214927.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.659 kcal (2) G-P(sol) polarization free energy of solvation -75.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds