Wall clock time and date at job start Tue Mar 31 2020 20:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34179 * 127.02477 * 2 1 4 4 O 1.34216 * 109.12068 * 179.97438 * 3 2 1 5 5 C 1.33652 * 110.91123 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.79982 * 180.02562 * 5 4 3 7 7 C 1.36416 * 108.39784 * 359.71430 * 5 4 3 8 8 C 1.47377 * 127.19073 * 180.30210 * 7 5 4 9 9 O 1.21613 * 120.00040 * 270.14917 * 8 7 5 10 10 N 1.34773 * 119.99821 * 90.15524 * 8 7 5 11 11 C 1.46500 * 119.99987 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47192 * 179.97438 * 11 10 8 13 13 C 1.53008 * 109.47157 * 179.97438 * 12 11 10 14 14 N 1.46891 * 109.47045 * 179.97438 * 13 12 11 15 15 C 1.46901 * 111.00377 * 294.30081 * 14 13 12 16 16 C 1.53241 * 109.34285 * 172.74779 * 15 14 13 17 17 N 1.47075 * 108.52216 * 53.82963 * 16 15 14 18 18 C 1.36940 * 120.88029 * 128.83285 * 17 16 15 19 19 H 1.07994 * 120.00048 * 333.49407 * 18 17 16 20 20 C 1.38815 * 119.99630 * 153.48577 * 18 17 16 21 21 N 1.31623 * 119.99483 * 159.44239 * 20 18 17 22 22 Si 1.86796 * 120.00101 * 339.45172 * 20 18 17 23 23 H 1.48499 * 109.47531 * 91.97431 * 22 20 18 24 24 H 1.48503 * 109.46861 * 211.97288 * 22 20 18 25 25 H 1.48497 * 109.47146 * 331.96695 * 22 20 18 26 26 C 1.47080 * 118.23660 * 308.81925 * 17 16 15 27 27 C 1.46898 * 111.00147 * 170.00065 * 14 13 12 28 28 H 1.09003 * 109.46800 * 90.02648 * 1 2 3 29 29 H 1.09003 * 109.47131 * 330.02851 * 1 2 3 30 30 H 1.09001 * 109.47551 * 210.02948 * 1 2 3 31 31 H 1.07994 * 125.43907 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47162 * 359.97186 * 6 5 4 33 33 H 1.08993 * 109.47272 * 119.97723 * 6 5 4 34 34 H 1.09002 * 109.46952 * 239.97442 * 6 5 4 35 35 H 0.96998 * 120.00420 * 359.97438 * 10 8 7 36 36 H 1.09010 * 109.46980 * 299.99476 * 11 10 8 37 37 H 1.08998 * 109.47151 * 59.99667 * 11 10 8 38 38 H 1.08996 * 109.46896 * 299.99738 * 12 11 10 39 39 H 1.08998 * 109.47213 * 59.99866 * 12 11 10 40 40 H 1.09003 * 109.46885 * 300.00012 * 13 12 11 41 41 H 1.08998 * 109.47012 * 59.99934 * 13 12 11 42 42 H 1.08999 * 109.49111 * 292.70993 * 15 14 13 43 43 H 1.09006 * 109.48833 * 52.78702 * 15 14 13 44 44 H 1.09000 * 109.62540 * 294.11905 * 16 15 14 45 45 H 1.09002 * 109.62652 * 173.54263 * 16 15 14 46 46 H 0.96996 * 119.99419 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.62896 * 291.46903 * 26 17 16 48 48 H 1.08999 * 109.78711 * 170.98674 * 26 17 16 49 49 H 1.09004 * 109.49042 * 307.21201 * 27 14 13 50 50 H 1.09000 * 109.49431 * 67.28988 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0712 0.0000 4 8 3.5921 0.6586 0.0006 5 6 3.6623 -0.6760 0.0015 6 6 4.9291 -1.4922 0.0029 7 6 2.3922 -1.1739 0.0080 8 6 1.9913 -2.5921 0.0175 9 8 1.8255 -3.1841 -1.0318 10 7 1.8083 -3.2328 1.1890 11 6 1.4092 -4.6423 1.1984 12 6 1.2716 -5.1237 2.6442 13 6 0.8542 -6.5958 2.6540 14 7 0.7226 -7.0581 4.0420 15 6 2.0234 -7.0517 4.7247 16 6 1.8182 -7.3638 6.2109 17 7 1.0625 -8.6204 6.3244 18 6 1.5090 -9.6394 7.1228 19 1 2.5637 -9.7384 7.3328 20 6 0.6059 -10.5450 7.6625 21 7 1.0226 -11.7233 8.0752 22 14 -1.2008 -10.0914 7.8026 23 1 -1.9205 -10.5429 6.5847 24 1 -1.7858 -10.7524 8.9969 25 1 -1.3323 -8.6185 7.9380 26 6 -0.1858 -8.7534 5.5579 27 6 0.0983 -8.3867 4.0975 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 0.8903 0.5134 30 1 -0.3634 -0.8897 0.5143 31 1 1.9896 2.1010 -0.0004 32 1 5.7911 -0.8251 0.0025 33 1 4.9558 -2.1200 0.8935 34 1 4.9566 -2.1219 -0.8864 35 1 1.9407 -2.7607 2.0259 36 1 0.4536 -4.7528 0.6858 37 1 2.1663 -5.2377 0.6881 38 1 2.2273 -5.0133 3.1564 39 1 0.5147 -4.5284 3.1548 40 1 -0.1017 -6.7058 2.1418 41 1 1.6107 -7.1914 2.1432 42 1 2.6710 -7.8075 4.2803 43 1 2.4845 -6.0696 4.6194 44 1 1.2576 -6.5556 6.6806 45 1 2.7866 -7.4734 6.6991 46 1 0.3915 -12.3562 8.4520 47 1 -0.9390 -8.0790 5.9650 48 1 -0.5456 -9.7808 5.6141 49 1 -0.8367 -8.3728 3.5374 50 1 0.7727 -9.1239 3.6619 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731359329.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:25 Heat of formation + Delta-G solvation = 5.008628 kcal Electronic energy + Delta-G solvation = -28483.291732 eV Core-core repulsion = 24512.888283 eV Total energy + Delta-G solvation = -3970.403449 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.95179 -39.72214 -38.53283 -35.98343 -34.53949 -34.31042 -32.98068 -32.00715 -30.97452 -30.35824 -28.64246 -27.30730 -26.74937 -24.81562 -23.57747 -22.95174 -22.15730 -21.37406 -20.38607 -19.98688 -19.42123 -18.08494 -16.96627 -16.80099 -16.22249 -16.11848 -15.97888 -15.40176 -15.01889 -14.64282 -14.45123 -14.24923 -14.11726 -13.93773 -13.77559 -13.69009 -13.61904 -13.35191 -13.24535 -13.08567 -12.77294 -12.54895 -12.35122 -12.28674 -11.76989 -11.70199 -11.65077 -11.62192 -11.07724 -10.86910 -10.51983 -10.39675 -10.31583 -10.07082 -9.81497 -9.80140 -9.46189 -9.37786 -8.88978 -8.65645 -8.02988 -6.96673 -5.94945 -3.30191 1.20964 1.81251 2.22916 2.43009 2.95990 3.32292 3.49204 3.53553 4.03566 4.12266 4.36640 4.53316 4.53500 4.66035 4.78412 4.85197 4.92038 4.96962 4.98052 5.04680 5.14595 5.22851 5.23527 5.32562 5.37730 5.44294 5.47639 5.51323 5.60309 5.67164 5.72118 5.72609 5.87781 5.95232 5.98147 6.00011 6.06725 6.07291 6.14257 6.22588 6.38523 6.56407 6.64018 6.65073 6.86856 7.16988 7.39866 7.44022 7.89428 7.94045 8.32202 8.92828 9.71646 10.11044 11.21064 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024321 B = 0.001873 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.988543 B =14942.219595 C =15208.523388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.147 4.147 3 C -0.040 4.040 4 O -0.172 6.172 5 C 0.046 3.954 6 C -0.083 4.083 7 C -0.233 4.233 8 C 0.593 3.407 9 O -0.532 6.532 10 N -0.719 5.719 11 C 0.119 3.881 12 C -0.127 4.127 13 C 0.058 3.942 14 N -0.535 5.535 15 C 0.039 3.961 16 C 0.152 3.848 17 N -0.609 5.609 18 C -0.259 4.259 19 H 0.085 0.915 20 C 0.021 3.979 21 N -0.909 5.909 22 Si 0.885 3.115 23 H -0.289 1.289 24 H -0.304 1.304 25 H -0.270 1.270 26 C 0.130 3.870 27 C 0.044 3.956 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.208 0.792 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.403 0.597 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.032 0.968 43 H 0.067 0.933 44 H 0.029 0.971 45 H 0.064 0.936 46 H 0.262 0.738 47 H 0.032 0.968 48 H 0.074 0.926 49 H 0.065 0.935 50 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 25.638 -16.894 30.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.149 4.149 3 C -0.106 4.106 4 O -0.069 6.069 5 C -0.006 4.006 6 C -0.139 4.139 7 C -0.237 4.237 8 C 0.378 3.622 9 O -0.409 6.409 10 N -0.371 5.371 11 C -0.004 4.004 12 C -0.165 4.165 13 C -0.071 4.071 14 N -0.260 5.260 15 C -0.090 4.090 16 C 0.026 3.974 17 N -0.333 5.333 18 C -0.387 4.387 19 H 0.103 0.897 20 C -0.178 4.178 21 N -0.553 5.553 22 Si 0.715 3.285 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.195 1.195 26 C 0.004 3.996 27 C -0.086 4.086 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.224 0.776 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.238 0.762 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.050 0.950 48 H 0.092 0.908 49 H 0.084 0.916 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.807 25.518 -17.292 30.952 hybrid contribution -0.714 -0.221 0.067 0.751 sum 2.093 25.296 -17.224 30.675 Atomic orbital electron populations 1.20205 0.88526 1.02939 1.02661 1.21356 0.96862 0.90482 1.06226 1.23640 0.79557 0.99582 1.07837 1.83737 1.29642 1.21849 1.71641 1.22549 0.96025 0.80842 1.01167 1.20475 0.91097 0.97878 1.04446 1.20995 0.93273 0.93946 1.15512 1.17278 0.76539 0.84658 0.83717 1.90818 1.50513 1.67700 1.31822 1.46024 1.69938 1.12673 1.08445 1.21393 1.00860 0.80435 0.97756 1.21798 1.02914 0.97168 0.94664 1.21950 1.00643 0.93952 0.90522 1.61914 1.23702 1.26879 1.13474 1.22697 0.89331 0.99559 0.97430 1.21002 0.96108 0.88309 0.92017 1.44411 1.24393 1.13524 1.50972 1.18924 0.93588 1.02885 1.23309 0.89712 1.25274 0.97888 0.96189 0.98447 1.69840 1.34931 1.05485 1.45012 0.86934 0.86586 0.78789 0.76177 1.21634 1.23193 1.19472 1.21424 0.89414 0.99736 0.89019 1.22633 0.97997 0.88274 0.99663 0.90941 0.91003 0.91377 0.77586 0.89733 0.89055 0.88985 0.76236 0.91215 0.91319 0.91007 0.90333 0.90880 0.94942 0.94935 0.91442 0.95264 0.91740 0.92785 0.94979 0.90755 0.91619 0.94595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.38 36.01 0.37 -0.22 16 2 C -0.15 -1.26 6.38 -102.49 -0.65 -1.91 16 3 C -0.04 -0.28 11.96 29.30 0.35 0.07 16 4 O -0.17 -1.46 10.52 7.65 0.08 -1.38 16 5 C 0.05 0.40 7.37 -34.96 -0.26 0.14 16 6 C -0.08 -0.50 10.17 36.01 0.37 -0.13 16 7 C -0.23 -2.33 6.07 -103.27 -0.63 -2.96 16 8 C 0.59 6.77 7.41 -12.54 -0.09 6.68 16 9 O -0.53 -8.15 17.11 5.27 0.09 -8.06 16 10 N -0.72 -6.49 5.55 -61.40 -0.34 -6.84 16 11 C 0.12 1.13 5.67 -4.04 -0.02 1.11 16 12 C -0.13 -1.22 5.26 -26.73 -0.14 -1.36 16 13 C 0.06 0.71 4.96 -3.82 -0.02 0.69 16 14 N -0.53 -8.45 4.63 -234.32 -1.08 -9.53 16 15 C 0.04 0.63 5.46 -3.70 -0.02 0.61 16 16 C 0.15 2.98 6.69 -3.60 -0.02 2.95 16 17 N -0.61 -14.58 2.82 -172.02 -0.48 -15.07 16 18 C -0.26 -7.26 10.08 -15.06 -0.15 -7.41 16 19 H 0.09 2.53 8.05 -52.49 -0.42 2.10 16 20 C 0.02 0.60 5.24 -17.43 -0.09 0.51 16 21 N -0.91 -27.94 13.97 55.49 0.78 -27.16 16 22 Si 0.88 22.50 24.31 -169.99 -4.13 18.36 16 23 H -0.29 -7.04 6.58 56.52 0.37 -6.67 16 24 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 25 H -0.27 -6.79 6.61 56.52 0.37 -6.42 16 26 C 0.13 2.86 4.35 -3.60 -0.02 2.85 16 27 C 0.04 0.78 5.62 -3.70 -0.02 0.76 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.21 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.40 2.83 8.46 -40.82 -0.35 2.49 16 36 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.67 6.40 -51.93 -0.33 0.34 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.84 7.97 -51.93 -0.41 0.42 16 41 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.89 6.16 -51.93 -0.32 0.57 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 1.24 7.95 -51.93 -0.41 0.82 16 46 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 47 H 0.03 0.72 6.94 -51.93 -0.36 0.36 16 48 H 0.07 1.78 4.61 -51.93 -0.24 1.54 16 49 H 0.07 1.03 7.99 -51.93 -0.41 0.62 16 50 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 399.02 15.07 6.01 6.01 Total: -1.00 -34.89 399.02 -8.50 -43.40 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -8.37 Total: -2.13 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.05 Total: 2.39 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -1.14 Total: -58.60 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.17 Total: -9.44 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.13 Total: 18.36 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.89 -8.50 -43.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731359329.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.406 kcal (2) G-P(sol) polarization free energy of solvation -34.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds