Wall clock time and date at job start Tue Mar 31 2020 20:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34179 * 127.02477 * 2 1 4 4 O 1.34216 * 109.12068 * 179.97438 * 3 2 1 5 5 C 1.33652 * 110.91123 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.79982 * 180.02562 * 5 4 3 7 7 C 1.36416 * 108.39784 * 359.71430 * 5 4 3 8 8 C 1.47377 * 127.19073 * 180.30210 * 7 5 4 9 9 O 1.21613 * 120.00040 * 270.14917 * 8 7 5 10 10 N 1.34773 * 119.99821 * 90.15524 * 8 7 5 11 11 C 1.46500 * 119.99987 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47192 * 179.97438 * 11 10 8 13 13 C 1.53008 * 109.47157 * 179.97438 * 12 11 10 14 14 N 1.46891 * 109.47045 * 179.97438 * 13 12 11 15 15 C 1.46901 * 111.00377 * 294.30081 * 14 13 12 16 16 C 1.53241 * 109.34285 * 172.74779 * 15 14 13 17 17 N 1.47075 * 108.52216 * 53.82963 * 16 15 14 18 18 C 1.36940 * 120.88029 * 128.83285 * 17 16 15 19 19 H 1.07994 * 120.00048 * 333.49407 * 18 17 16 20 20 C 1.38815 * 119.99630 * 153.48577 * 18 17 16 21 21 N 1.31623 * 119.99483 * 159.44239 * 20 18 17 22 22 Si 1.86796 * 120.00101 * 339.45172 * 20 18 17 23 23 H 1.48499 * 109.47531 * 91.97431 * 22 20 18 24 24 H 1.48503 * 109.46861 * 211.97288 * 22 20 18 25 25 H 1.48497 * 109.47146 * 331.96695 * 22 20 18 26 26 C 1.47080 * 118.23660 * 308.81925 * 17 16 15 27 27 C 1.46898 * 111.00147 * 170.00065 * 14 13 12 28 28 H 1.09003 * 109.46800 * 90.02648 * 1 2 3 29 29 H 1.09003 * 109.47131 * 330.02851 * 1 2 3 30 30 H 1.09001 * 109.47551 * 210.02948 * 1 2 3 31 31 H 1.07994 * 125.43907 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47162 * 359.97186 * 6 5 4 33 33 H 1.08993 * 109.47272 * 119.97723 * 6 5 4 34 34 H 1.09002 * 109.46952 * 239.97442 * 6 5 4 35 35 H 0.96998 * 120.00420 * 359.97438 * 10 8 7 36 36 H 1.09010 * 109.46980 * 299.99476 * 11 10 8 37 37 H 1.08998 * 109.47151 * 59.99667 * 11 10 8 38 38 H 1.08996 * 109.46896 * 299.99738 * 12 11 10 39 39 H 1.08998 * 109.47213 * 59.99866 * 12 11 10 40 40 H 1.09003 * 109.46885 * 300.00012 * 13 12 11 41 41 H 1.08998 * 109.47012 * 59.99934 * 13 12 11 42 42 H 1.08999 * 109.49111 * 292.70993 * 15 14 13 43 43 H 1.09006 * 109.48833 * 52.78702 * 15 14 13 44 44 H 1.09000 * 109.62540 * 294.11905 * 16 15 14 45 45 H 1.09002 * 109.62652 * 173.54263 * 16 15 14 46 46 H 0.96996 * 119.99419 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.62896 * 291.46903 * 26 17 16 48 48 H 1.08999 * 109.78711 * 170.98674 * 26 17 16 49 49 H 1.09004 * 109.49042 * 307.21201 * 27 14 13 50 50 H 1.09000 * 109.49431 * 67.28988 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0712 0.0000 4 8 3.5921 0.6586 0.0006 5 6 3.6623 -0.6760 0.0015 6 6 4.9291 -1.4922 0.0029 7 6 2.3922 -1.1739 0.0080 8 6 1.9913 -2.5921 0.0175 9 8 1.8255 -3.1841 -1.0318 10 7 1.8083 -3.2328 1.1890 11 6 1.4092 -4.6423 1.1984 12 6 1.2716 -5.1237 2.6442 13 6 0.8542 -6.5958 2.6540 14 7 0.7226 -7.0581 4.0420 15 6 2.0234 -7.0517 4.7247 16 6 1.8182 -7.3638 6.2109 17 7 1.0625 -8.6204 6.3244 18 6 1.5090 -9.6394 7.1228 19 1 2.5637 -9.7384 7.3328 20 6 0.6059 -10.5450 7.6625 21 7 1.0226 -11.7233 8.0752 22 14 -1.2008 -10.0914 7.8026 23 1 -1.9205 -10.5429 6.5847 24 1 -1.7858 -10.7524 8.9969 25 1 -1.3323 -8.6185 7.9380 26 6 -0.1858 -8.7534 5.5579 27 6 0.0983 -8.3867 4.0975 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 0.8903 0.5134 30 1 -0.3634 -0.8897 0.5143 31 1 1.9896 2.1010 -0.0004 32 1 5.7911 -0.8251 0.0025 33 1 4.9558 -2.1200 0.8935 34 1 4.9566 -2.1219 -0.8864 35 1 1.9407 -2.7607 2.0259 36 1 0.4536 -4.7528 0.6858 37 1 2.1663 -5.2377 0.6881 38 1 2.2273 -5.0133 3.1564 39 1 0.5147 -4.5284 3.1548 40 1 -0.1017 -6.7058 2.1418 41 1 1.6107 -7.1914 2.1432 42 1 2.6710 -7.8075 4.2803 43 1 2.4845 -6.0696 4.6194 44 1 1.2576 -6.5556 6.6806 45 1 2.7866 -7.4734 6.6991 46 1 0.3915 -12.3562 8.4520 47 1 -0.9390 -8.0790 5.9650 48 1 -0.5456 -9.7808 5.6141 49 1 -0.8367 -8.3728 3.5374 50 1 0.7727 -9.1239 3.6619 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731359329.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:24 Heat of formation + Delta-G solvation = -20.439688 kcal Electronic energy + Delta-G solvation = -28484.395254 eV Core-core repulsion = 24512.888283 eV Total energy + Delta-G solvation = -3971.506971 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.54631 -40.60830 -39.92119 -37.17851 -35.86800 -34.94661 -33.85465 -33.48549 -32.31431 -31.84055 -29.30982 -28.57071 -27.43650 -26.01992 -25.09644 -24.17385 -23.40756 -22.36622 -21.16682 -20.93136 -20.60933 -18.86321 -18.70432 -17.65228 -17.35199 -16.92080 -16.86743 -16.74376 -16.05399 -16.00012 -15.79026 -15.54282 -15.44345 -15.08363 -14.80802 -14.46655 -14.36625 -14.23280 -14.17293 -13.98648 -13.83224 -13.61473 -13.57255 -13.28020 -13.14897 -12.97790 -12.70074 -12.52122 -12.31921 -12.26048 -12.18593 -11.89854 -11.62696 -11.59838 -11.41074 -11.26174 -10.72097 -10.46756 -10.20710 -9.45477 -9.36684 -8.89819 -8.17468 -5.48836 0.60504 1.22184 1.29668 1.38355 1.41618 1.51404 1.86595 2.21796 2.41146 2.90129 3.07138 3.36734 3.52309 3.71457 3.91444 3.95973 4.02324 4.14184 4.19416 4.23024 4.26693 4.36400 4.40334 4.50134 4.54360 4.56004 4.60032 4.60912 4.64031 4.73173 4.73791 4.75259 4.79814 4.83777 4.97040 4.97966 5.00722 5.02359 5.16228 5.19366 5.21296 5.31172 5.36266 5.45705 5.82259 6.06649 6.07981 6.10942 6.22672 6.42031 6.89314 7.09246 7.60590 8.03149 9.02345 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024321 B = 0.001873 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.988543 B =14942.219595 C =15208.523388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.170 4.170 3 C -0.030 4.030 4 O -0.179 6.179 5 C 0.043 3.957 6 C -0.084 4.084 7 C -0.261 4.261 8 C 0.596 3.404 9 O -0.579 6.579 10 N -0.705 5.705 11 C 0.125 3.875 12 C -0.112 4.112 13 C 0.058 3.942 14 N -0.537 5.537 15 C 0.050 3.950 16 C 0.145 3.855 17 N -0.625 5.625 18 C -0.248 4.248 19 H 0.052 0.948 20 C -0.038 4.038 21 N -0.958 5.958 22 Si 0.950 3.050 23 H -0.272 1.272 24 H -0.311 1.311 25 H -0.263 1.263 26 C 0.125 3.875 27 C 0.052 3.948 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.245 0.755 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.415 0.585 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.032 0.968 42 H 0.018 0.982 43 H 0.105 0.895 44 H 0.038 0.962 45 H 0.060 0.940 46 H 0.261 0.739 47 H 0.036 0.964 48 H 0.052 0.948 49 H 0.093 0.907 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.286 28.760 -17.855 33.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.172 4.172 3 C -0.096 4.096 4 O -0.075 6.075 5 C -0.009 4.009 6 C -0.140 4.140 7 C -0.265 4.265 8 C 0.382 3.618 9 O -0.459 6.459 10 N -0.356 5.356 11 C 0.001 3.999 12 C -0.150 4.150 13 C -0.070 4.070 14 N -0.262 5.262 15 C -0.079 4.079 16 C 0.020 3.980 17 N -0.350 5.350 18 C -0.378 4.378 19 H 0.070 0.930 20 C -0.233 4.233 21 N -0.604 5.604 22 Si 0.779 3.221 23 H -0.199 1.199 24 H -0.240 1.240 25 H -0.188 1.188 26 C -0.001 4.001 27 C -0.077 4.077 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.261 0.739 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.252 0.748 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.051 0.949 42 H 0.037 0.963 43 H 0.123 0.877 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.070 0.930 49 H 0.112 0.888 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.075 28.697 -18.255 34.074 hybrid contribution -0.391 -1.119 0.341 1.234 sum 1.684 27.578 -17.914 32.928 Atomic orbital electron populations 1.20221 0.87673 1.03584 1.02607 1.21645 0.97718 0.90421 1.07411 1.24359 0.78651 1.00821 1.05729 1.83759 1.30500 1.21678 1.71544 1.22946 0.96454 0.81132 1.00369 1.20583 0.90739 0.98013 1.04633 1.21083 0.94490 0.93582 1.17373 1.17492 0.75681 0.85152 0.83433 1.90789 1.52863 1.68827 1.33457 1.45910 1.68757 1.12488 1.08467 1.21280 1.00419 0.80513 0.97646 1.21632 1.03393 0.95398 0.94542 1.22024 1.01470 0.95257 0.88221 1.61894 1.23256 1.25264 1.15775 1.22561 0.89588 1.01116 0.94670 1.21207 0.95431 0.86555 0.94791 1.44573 1.25418 1.14179 1.50835 1.18876 0.92310 1.03626 1.22967 0.92988 1.25914 1.02245 0.96067 0.99071 1.69970 1.36420 1.06713 1.47282 0.85872 0.81524 0.78498 0.76216 1.19903 1.23989 1.18782 1.21446 0.88543 0.98585 0.91478 1.22437 0.99327 0.89210 0.96736 0.91341 0.88589 0.92484 0.73925 0.87999 0.88035 0.89514 0.74824 0.91790 0.91895 0.90196 0.89743 0.89810 0.94929 0.96332 0.87676 0.94398 0.92163 0.92962 0.94651 0.93009 0.88836 0.95961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.38 71.24 0.74 -0.28 16 2 C -0.17 -2.64 6.38 -18.48 -0.12 -2.75 16 3 C -0.03 -0.35 11.96 66.89 0.80 0.45 16 4 O -0.18 -2.68 10.52 4.46 0.05 -2.63 16 5 C 0.04 0.69 7.37 25.26 0.19 0.88 16 6 C -0.08 -0.88 10.17 71.24 0.72 -0.16 16 7 C -0.26 -4.98 6.07 -18.99 -0.12 -5.09 16 8 C 0.60 13.22 7.41 86.65 0.64 13.86 16 9 O -0.58 -17.84 17.11 -4.07 -0.07 -17.91 16 10 N -0.71 -11.51 5.55 -466.41 -2.59 -14.10 16 11 C 0.13 2.11 5.67 86.38 0.49 2.60 16 12 C -0.11 -1.75 5.26 30.60 0.16 -1.59 16 13 C 0.06 1.23 4.96 86.31 0.43 1.65 16 14 N -0.54 -15.31 4.63 -895.25 -4.14 -19.45 16 15 C 0.05 1.47 5.46 86.38 0.47 1.94 16 16 C 0.14 5.48 6.69 86.35 0.58 6.06 16 17 N -0.62 -29.65 2.82 -698.14 -1.97 -31.62 16 18 C -0.25 -14.22 10.08 84.03 0.85 -13.37 16 19 H 0.05 3.24 8.05 -2.91 -0.02 3.22 16 20 C -0.04 -2.27 5.24 84.86 0.44 -1.82 16 21 N -0.96 -60.64 13.97 21.65 0.30 -60.33 16 22 Si 0.95 47.02 24.31 68.60 1.67 48.68 16 23 H -0.27 -12.63 6.58 99.48 0.65 -11.98 16 24 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16 25 H -0.26 -12.58 6.61 99.48 0.66 -11.92 16 26 C 0.12 5.31 4.35 86.35 0.38 5.68 16 27 C 0.05 1.76 5.62 86.38 0.49 2.24 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.24 0.61 8.06 -2.91 -0.02 0.59 16 32 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.42 4.84 8.46 -92.71 -0.78 4.06 16 36 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.16 6.40 -2.39 -0.02 1.14 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.62 7.97 -2.39 -0.02 1.60 16 41 H 0.03 0.71 8.12 -2.39 -0.02 0.69 16 42 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.11 2.35 6.16 -2.38 -0.01 2.34 16 44 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.06 2.28 7.95 -2.39 -0.02 2.26 16 46 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 47 H 0.04 1.49 6.94 -2.39 -0.02 1.48 16 48 H 0.05 2.43 4.61 -2.39 -0.01 2.42 16 49 H 0.09 2.63 7.99 -2.38 -0.02 2.61 16 50 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -77.86 399.02 0.44 -77.43 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.05 Total: 9.62 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 7.14 Total: 10.31 kcal Atomic # 7 Polarization: -117.10 SS G_CDS: -8.40 Total: -125.50 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.02 Total: -20.54 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.67 Total: 48.68 kcal Total: -77.86 0.44 -77.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731359329.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.988 kcal (2) G-P(sol) polarization free energy of solvation -77.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds