Wall clock time and date at job start Tue Mar 31 2020 18:25:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.30011 * 127.33565 * 2 1
4 4 O 1.20663 * 112.30031 * 179.97438 * 3 2 1
5 5 C 1.33491 * 113.15921 * 0.02562 * 4 3 2
6 6 C 1.50691 * 126.83001 * 179.97438 * 5 4 3
7 7 C 1.37360 * 106.34136 * 359.97438 * 5 4 3
8 8 C 1.47398 * 128.56709 * 180.02562 * 7 5 4
9 9 O 1.21604 * 120.00699 * 89.99552 * 8 7 5
10 10 N 1.34776 * 119.99556 * 269.99391 * 8 7 5
11 11 C 1.46498 * 119.99992 * 179.97438 * 10 8 7
12 12 H 1.09001 * 109.47593 * 325.00370 * 11 10 8
13 13 C 1.53006 * 109.47413 * 205.00193 * 11 10 8
14 14 N 1.46498 * 109.46791 * 55.00391 * 13 11 10
15 15 C 1.36940 * 119.99540 * 180.02562 * 14 13 11
16 16 H 1.07998 * 120.00414 * 359.97438 * 15 14 13
17 17 C 1.38817 * 119.99358 * 179.97438 * 15 14 13
18 18 N 1.31624 * 119.99303 * 179.97438 * 17 15 14
19 19 Si 1.86794 * 120.00408 * 359.97438 * 17 15 14
20 20 H 1.48494 * 109.47196 * 90.00156 * 19 17 15
21 21 H 1.48499 * 109.46960 * 210.00048 * 19 17 15
22 22 H 1.48500 * 109.46846 * 329.99961 * 19 17 15
23 23 C 1.53008 * 109.46840 * 85.00482 * 11 10 8
24 24 C 1.53001 * 109.47139 * 60.00038 * 23 11 10
25 25 C 1.53000 * 109.46730 * 180.02562 * 24 23 11
26 26 C 1.52998 * 109.47252 * 60.00263 * 25 24 23
27 27 C 1.53001 * 109.47038 * 299.99549 * 26 25 24
28 28 C 1.52996 * 109.47223 * 60.00009 * 27 26 25
29 29 H 1.09005 * 109.46508 * 90.02826 * 1 2 3
30 30 H 1.09000 * 109.46963 * 210.01991 * 1 2 3
31 31 H 1.08996 * 109.47294 * 330.02939 * 1 2 3
32 32 H 1.09001 * 109.47692 * 0.02643 * 6 5 4
33 33 H 1.09008 * 109.47345 * 120.02202 * 6 5 4
34 34 H 1.09001 * 109.47450 * 240.02112 * 6 5 4
35 35 H 0.97002 * 120.00286 * 359.97438 * 10 8 7
36 36 H 1.09003 * 109.46748 * 175.00221 * 13 11 10
37 37 H 1.09001 * 109.46884 * 295.00204 * 13 11 10
38 38 H 0.96997 * 120.00280 * 359.97438 * 14 13 11
39 39 H 0.97001 * 119.99522 * 180.02562 * 18 17 15
40 40 H 1.09006 * 109.46752 * 180.02562 * 23 11 10
41 41 H 1.08996 * 109.46936 * 300.00032 * 24 23 11
42 42 H 1.08999 * 109.47055 * 60.00139 * 24 23 11
43 43 H 1.08996 * 109.47351 * 299.99673 * 25 24 23
44 44 H 1.09001 * 109.46710 * 179.97438 * 25 24 23
45 45 H 1.09003 * 109.47492 * 179.97438 * 26 25 24
46 46 H 1.08996 * 109.47424 * 59.99455 * 26 25 24
47 47 H 1.09006 * 109.46931 * 300.00207 * 27 26 25
48 48 H 1.08999 * 109.47055 * 180.02562 * 27 26 25
49 49 H 1.08998 * 109.47450 * 179.97438 * 28 27 26
50 50 H 1.09006 * 109.47049 * 59.99687 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2955 1.0337 0.0000
4 8 3.4608 0.7207 0.0005
5 6 3.6495 -0.6008 0.0004
6 6 4.9712 -1.3246 0.0003
7 6 2.3992 -1.1697 0.0003
8 6 2.0401 -2.5992 0.0007
9 8 1.8918 -3.1887 1.0538
10 7 1.8760 -3.2531 -1.1664
11 6 1.5196 -4.6740 -1.1662
12 1 2.0030 -5.1698 -0.3243
13 6 1.9868 -5.3173 -2.4735
14 7 3.4205 -5.0748 -2.6519
15 6 4.0642 -5.5592 -3.7593
16 1 3.5150 -6.1205 -4.5008
17 6 5.4226 -5.3289 -3.9286
18 7 6.0414 -5.7950 -4.9927
19 14 6.3723 -4.3576 -2.6465
20 1 6.9106 -5.2864 -1.6205
21 1 7.4948 -3.6389 -3.3013
22 1 5.4664 -3.3754 -1.9985
23 6 0.0017 -4.8190 -1.0404
24 6 -0.6768 -4.1233 -2.2222
25 6 -2.1947 -4.2678 -2.0960
26 6 -2.6614 -3.6241 -0.7888
27 6 -1.9830 -4.3198 0.3929
28 6 -0.4651 -4.1754 0.2668
29 1 -0.3632 -0.0005 -1.0277
30 1 -0.3633 -0.8898 0.5141
31 1 -0.3634 0.8902 0.5133
32 1 5.7835 -0.5978 0.0009
33 1 5.0429 -1.9503 0.8901
34 1 5.0433 -1.9495 -0.8899
35 1 1.9939 -2.7828 -2.0066
36 1 1.8017 -6.3909 -2.4365
37 1 1.4379 -4.8825 -3.3088
38 1 3.9137 -4.5704 -1.9862
39 1 6.9907 -5.6344 -5.1109
40 1 -0.2635 -5.8764 -1.0398
41 1 -0.4116 -3.0661 -2.2223
42 1 -0.3440 -4.5815 -3.1535
43 1 -2.4603 -5.3249 -2.0956
44 1 -2.6781 -3.7717 -2.9377
45 1 -3.7429 -3.7266 -0.6991
46 1 -2.3958 -2.5670 -0.7892
47 1 -2.2486 -5.3770 0.3934
48 1 -2.3158 -3.8616 1.3242
49 1 0.0183 -4.6707 1.1090
50 1 -0.1995 -3.1182 0.2663
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001732475686.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:25:42
Heat of formation + Delta-G solvation = 12.589274 kcal
Electronic energy + Delta-G solvation = -31234.017381 eV
Core-core repulsion = 27263.942653 eV
Total energy + Delta-G solvation = -3970.074728 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-44.91526 -40.30423 -38.13686 -35.92912 -34.64095 -33.78013 -33.61314 -31.59314
-30.92823 -30.69451 -28.92914 -28.17768 -27.44162 -24.70478 -23.70427 -22.74105
-21.61592 -21.20292 -20.35176 -20.05787 -19.41544 -18.12430 -17.85508 -17.47259
-16.39783 -16.10701 -15.57475 -14.88845 -14.63926 -14.50082 -14.22856 -14.05534
-13.89576 -13.69819 -13.57586 -13.54801 -13.39074 -13.15658 -12.90795 -12.69321
-12.61567 -12.52865 -12.38527 -12.07866 -11.93700 -11.31596 -11.20781 -11.14881
-11.04524 -10.93712 -10.88930 -10.46126 -10.27194 -10.23072 -10.08241 -9.92971
-9.78609 -9.68545 -9.38589 -8.99572 -8.82308 -7.34118 -5.85393 -3.22081
1.25596 1.82808 2.47317 2.76990 3.18284 3.30535 3.35382 3.37746
4.01696 4.16314 4.48537 4.62431 4.70885 4.74408 4.81173 4.88667
5.07759 5.11790 5.19972 5.25217 5.28895 5.32783 5.35629 5.40074
5.42481 5.46366 5.52185 5.55770 5.57909 5.64282 5.67840 5.69195
5.78998 5.85742 5.90087 5.95556 6.04288 6.09951 6.19037 6.20754
6.27555 6.34657 6.41418 6.52057 6.57527 6.74094 7.58763 7.89320
8.13638 8.24189 8.32808 9.11028 9.82825 10.02219 11.32630
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.008452 B = 0.005670 C = 0.003755
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3311.880014 B = 4936.877442 C = 7455.756972
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C 0.055 3.945
3 N -0.359 5.359
4 O 0.093 5.907
5 C 0.028 3.972
6 C -0.095 4.095
7 C -0.255 4.255
8 C 0.600 3.400
9 O -0.526 6.526
10 N -0.699 5.699
11 C 0.138 3.862
12 H 0.090 0.910
13 C 0.147 3.853
14 N -0.754 5.754
15 C -0.246 4.246
16 H 0.091 0.909
17 C 0.006 3.994
18 N -0.932 5.932
19 Si 0.883 3.117
20 H -0.284 1.284
21 H -0.291 1.291
22 H -0.273 1.273
23 C -0.093 4.093
24 C -0.117 4.117
25 C -0.117 4.117
26 C -0.118 4.118
27 C -0.120 4.120
28 C -0.106 4.106
29 H 0.085 0.915
30 H 0.084 0.916
31 H 0.080 0.920
32 H 0.089 0.911
33 H 0.097 0.903
34 H 0.107 0.893
35 H 0.406 0.594
36 H 0.043 0.957
37 H 0.038 0.962
38 H 0.361 0.639
39 H 0.260 0.740
40 H 0.080 0.920
41 H 0.060 0.940
42 H 0.071 0.929
43 H 0.060 0.940
44 H 0.058 0.942
45 H 0.055 0.945
46 H 0.057 0.943
47 H 0.058 0.942
48 H 0.055 0.945
49 H 0.068 0.932
50 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.009 8.750 10.161 19.392
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.107 4.107
3 N -0.067 5.067
4 O 0.032 5.968
5 C -0.036 4.036
6 C -0.152 4.152
7 C -0.263 4.263
8 C 0.384 3.616
9 O -0.403 6.403
10 N -0.349 5.349
11 C 0.034 3.966
12 H 0.108 0.892
13 C 0.020 3.980
14 N -0.400 5.400
15 C -0.375 4.375
16 H 0.108 0.892
17 C -0.190 4.190
18 N -0.579 5.579
19 Si 0.714 3.286
20 H -0.211 1.211
21 H -0.217 1.217
22 H -0.200 1.200
23 C -0.113 4.113
24 C -0.154 4.154
25 C -0.155 4.155
26 C -0.155 4.155
27 C -0.158 4.158
28 C -0.144 4.144
29 H 0.103 0.897
30 H 0.102 0.898
31 H 0.099 0.901
32 H 0.108 0.892
33 H 0.115 0.885
34 H 0.125 0.875
35 H 0.241 0.759
36 H 0.061 0.939
37 H 0.056 0.944
38 H 0.194 0.806
39 H 0.070 0.930
40 H 0.098 0.902
41 H 0.078 0.922
42 H 0.089 0.911
43 H 0.079 0.921
44 H 0.076 0.924
45 H 0.074 0.926
46 H 0.076 0.924
47 H 0.077 0.923
48 H 0.074 0.926
49 H 0.087 0.913
50 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -14.243 9.493 10.679 20.175
hybrid contribution 0.851 0.136 0.389 0.945
sum -13.392 9.629 11.068 19.864
Atomic orbital electron populations
1.20227 0.85319 1.04126 1.03736 1.24690 0.98409 0.86588 1.01033
1.73584 0.89196 1.23453 1.20471 1.84527 1.21451 1.22725 1.68093
1.24662 0.97539 0.83519 0.97843 1.20786 0.88933 0.99696 1.05796
1.21957 0.92755 0.95560 1.15982 1.16763 0.76750 0.83725 0.84335
1.90809 1.50508 1.67692 1.31310 1.45991 1.69261 1.11510 1.08165
1.21457 0.94424 0.80195 1.00562 0.89225 1.21030 0.86057 0.97956
0.93005 1.42670 1.04478 1.66869 1.25981 1.19035 0.92065 1.28306
0.98135 0.89156 1.24682 0.96432 1.00569 0.97353 1.69699 1.09885
1.50208 1.28130 0.86638 0.79955 0.80264 0.81739 1.21077 1.21698
1.20020 1.21521 0.93796 1.00505 0.95454 1.21646 0.94548 1.00868
0.98356 1.21516 0.96133 1.00801 0.97045 1.21528 0.99215 0.99684
0.95111 1.21568 0.96128 1.00452 0.97603 1.21646 0.94350 1.01316
0.97078 0.89671 0.89762 0.90077 0.89170 0.88470 0.87497 0.75936
0.93929 0.94389 0.80569 0.93000 0.90176 0.92157 0.91058 0.92088
0.92361 0.92632 0.92412 0.92278 0.92576 0.91347 0.92146
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.75 10.49 36.01 0.38 -0.37 16
2 C 0.06 0.73 7.59 -79.76 -0.61 0.12 16
3 N -0.36 -5.11 12.01 34.78 0.42 -4.70 16
4 O 0.09 1.29 11.06 18.66 0.21 1.49 16
5 C 0.03 0.38 7.55 -34.63 -0.26 0.11 16
6 C -0.10 -1.13 10.33 36.00 0.37 -0.76 16
7 C -0.26 -3.61 6.24 -102.89 -0.64 -4.25 16
8 C 0.60 8.91 5.98 -12.53 -0.07 8.84 16
9 O -0.53 -9.02 14.22 5.27 0.08 -8.94 16
10 N -0.70 -9.77 3.64 -54.88 -0.20 -9.97 16
11 C 0.14 1.97 2.16 -67.92 -0.15 1.83 16
12 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16
13 C 0.15 2.50 5.60 -4.04 -0.02 2.48 16
14 N -0.75 -16.26 5.24 -59.90 -0.31 -16.57 16
15 C -0.25 -6.52 10.47 -15.06 -0.16 -6.68 16
16 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16
17 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16
18 N -0.93 -28.22 13.97 55.49 0.78 -27.45 16
19 Si 0.88 20.59 27.74 -169.99 -4.71 15.87 16
20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
22 H -0.27 -5.56 4.46 56.52 0.25 -5.30 16
23 C -0.09 -1.10 2.07 -90.61 -0.19 -1.29 16
24 C -0.12 -1.27 4.70 -26.73 -0.13 -1.39 16
25 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16
26 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16
27 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16
28 C -0.11 -1.27 3.73 -26.73 -0.10 -1.37 16
29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
30 H 0.08 0.82 7.57 -51.93 -0.39 0.42 16
31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16
32 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16
33 H 0.10 1.09 8.14 -51.92 -0.42 0.67 16
34 H 0.11 1.45 6.09 -51.93 -0.32 1.14 16
35 H 0.41 5.59 8.59 -40.82 -0.35 5.24 16
36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16
37 H 0.04 0.63 6.17 -51.93 -0.32 0.31 16
38 H 0.36 7.68 5.20 -40.82 -0.21 7.47 16
39 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16
40 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16
41 H 0.06 0.66 7.60 -51.93 -0.39 0.27 16
42 H 0.07 0.82 6.32 -51.93 -0.33 0.49 16
43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16
45 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16
46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
49 H 0.07 0.94 7.52 -51.93 -0.39 0.55 16
50 H 0.06 0.78 5.20 -51.93 -0.27 0.51 16
LS Contribution 388.65 15.07 5.86 5.86
Total: -1.00 -31.02 388.65 -8.19 -39.21
By element:
Atomic # 1 Polarization: 19.89 SS G_CDS: -8.15 Total: 11.74 kcal
Atomic # 6 Polarization: -4.39 SS G_CDS: -2.15 Total: -6.54 kcal
Atomic # 7 Polarization: -59.37 SS G_CDS: 0.68 Total: -58.69 kcal
Atomic # 8 Polarization: -7.73 SS G_CDS: 0.28 Total: -7.45 kcal
Atomic # 14 Polarization: 20.59 SS G_CDS: -4.71 Total: 15.87 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -31.02 -8.19 -39.21 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001732475686.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.797 kcal
(2) G-P(sol) polarization free energy of solvation -31.016 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.782 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.208 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.589 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds