Wall clock time and date at job start Tue Mar 31 2020 18:25:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.30011 * 127.33565 * 2 1
4 4 O 1.20663 * 112.30031 * 179.97438 * 3 2 1
5 5 C 1.33491 * 113.15921 * 0.02562 * 4 3 2
6 6 C 1.50691 * 126.83001 * 179.97438 * 5 4 3
7 7 C 1.37360 * 106.34136 * 359.97438 * 5 4 3
8 8 C 1.47398 * 128.56709 * 180.02562 * 7 5 4
9 9 O 1.21604 * 120.00699 * 89.99552 * 8 7 5
10 10 N 1.34776 * 119.99556 * 269.99391 * 8 7 5
11 11 C 1.46498 * 119.99992 * 179.97438 * 10 8 7
12 12 H 1.09001 * 109.47593 * 325.00370 * 11 10 8
13 13 C 1.53006 * 109.47413 * 205.00193 * 11 10 8
14 14 N 1.46498 * 109.46791 * 55.00391 * 13 11 10
15 15 C 1.36940 * 119.99540 * 180.02562 * 14 13 11
16 16 H 1.07998 * 120.00414 * 359.97438 * 15 14 13
17 17 C 1.38817 * 119.99358 * 179.97438 * 15 14 13
18 18 N 1.31624 * 119.99303 * 179.97438 * 17 15 14
19 19 Si 1.86794 * 120.00408 * 359.97438 * 17 15 14
20 20 H 1.48494 * 109.47196 * 90.00156 * 19 17 15
21 21 H 1.48499 * 109.46960 * 210.00048 * 19 17 15
22 22 H 1.48500 * 109.46846 * 329.99961 * 19 17 15
23 23 C 1.53008 * 109.46840 * 85.00482 * 11 10 8
24 24 C 1.53001 * 109.47139 * 60.00038 * 23 11 10
25 25 C 1.53000 * 109.46730 * 180.02562 * 24 23 11
26 26 C 1.52998 * 109.47252 * 60.00263 * 25 24 23
27 27 C 1.53001 * 109.47038 * 299.99549 * 26 25 24
28 28 C 1.52996 * 109.47223 * 60.00009 * 27 26 25
29 29 H 1.09005 * 109.46508 * 90.02826 * 1 2 3
30 30 H 1.09000 * 109.46963 * 210.01991 * 1 2 3
31 31 H 1.08996 * 109.47294 * 330.02939 * 1 2 3
32 32 H 1.09001 * 109.47692 * 0.02643 * 6 5 4
33 33 H 1.09008 * 109.47345 * 120.02202 * 6 5 4
34 34 H 1.09001 * 109.47450 * 240.02112 * 6 5 4
35 35 H 0.97002 * 120.00286 * 359.97438 * 10 8 7
36 36 H 1.09003 * 109.46748 * 175.00221 * 13 11 10
37 37 H 1.09001 * 109.46884 * 295.00204 * 13 11 10
38 38 H 0.96997 * 120.00280 * 359.97438 * 14 13 11
39 39 H 0.97001 * 119.99522 * 180.02562 * 18 17 15
40 40 H 1.09006 * 109.46752 * 180.02562 * 23 11 10
41 41 H 1.08996 * 109.46936 * 300.00032 * 24 23 11
42 42 H 1.08999 * 109.47055 * 60.00139 * 24 23 11
43 43 H 1.08996 * 109.47351 * 299.99673 * 25 24 23
44 44 H 1.09001 * 109.46710 * 179.97438 * 25 24 23
45 45 H 1.09003 * 109.47492 * 179.97438 * 26 25 24
46 46 H 1.08996 * 109.47424 * 59.99455 * 26 25 24
47 47 H 1.09006 * 109.46931 * 300.00207 * 27 26 25
48 48 H 1.08999 * 109.47055 * 180.02562 * 27 26 25
49 49 H 1.08998 * 109.47450 * 179.97438 * 28 27 26
50 50 H 1.09006 * 109.47049 * 59.99687 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2955 1.0337 0.0000
4 8 3.4608 0.7207 0.0005
5 6 3.6495 -0.6008 0.0004
6 6 4.9712 -1.3246 0.0003
7 6 2.3992 -1.1697 0.0003
8 6 2.0401 -2.5992 0.0007
9 8 1.8918 -3.1887 1.0538
10 7 1.8760 -3.2531 -1.1664
11 6 1.5196 -4.6740 -1.1662
12 1 2.0030 -5.1698 -0.3243
13 6 1.9868 -5.3173 -2.4735
14 7 3.4205 -5.0748 -2.6519
15 6 4.0642 -5.5592 -3.7593
16 1 3.5150 -6.1205 -4.5008
17 6 5.4226 -5.3289 -3.9286
18 7 6.0414 -5.7950 -4.9927
19 14 6.3723 -4.3576 -2.6465
20 1 6.9106 -5.2864 -1.6205
21 1 7.4948 -3.6389 -3.3013
22 1 5.4664 -3.3754 -1.9985
23 6 0.0017 -4.8190 -1.0404
24 6 -0.6768 -4.1233 -2.2222
25 6 -2.1947 -4.2678 -2.0960
26 6 -2.6614 -3.6241 -0.7888
27 6 -1.9830 -4.3198 0.3929
28 6 -0.4651 -4.1754 0.2668
29 1 -0.3632 -0.0005 -1.0277
30 1 -0.3633 -0.8898 0.5141
31 1 -0.3634 0.8902 0.5133
32 1 5.7835 -0.5978 0.0009
33 1 5.0429 -1.9503 0.8901
34 1 5.0433 -1.9495 -0.8899
35 1 1.9939 -2.7828 -2.0066
36 1 1.8017 -6.3909 -2.4365
37 1 1.4379 -4.8825 -3.3088
38 1 3.9137 -4.5704 -1.9862
39 1 6.9907 -5.6344 -5.1109
40 1 -0.2635 -5.8764 -1.0398
41 1 -0.4116 -3.0661 -2.2223
42 1 -0.3440 -4.5815 -3.1535
43 1 -2.4603 -5.3249 -2.0956
44 1 -2.6781 -3.7717 -2.9377
45 1 -3.7429 -3.7266 -0.6991
46 1 -2.3958 -2.5670 -0.7892
47 1 -2.2486 -5.3770 0.3934
48 1 -2.3158 -3.8616 1.3242
49 1 0.0183 -4.6707 1.1090
50 1 -0.1995 -3.1182 0.2663
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001732475686.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:25:41
Heat of formation + Delta-G solvation = -5.959320 kcal
Electronic energy + Delta-G solvation = -31234.821708 eV
Core-core repulsion = 27263.942653 eV
Total energy + Delta-G solvation = -3970.879055 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-45.94434 -41.44406 -39.16238 -37.29943 -35.64283 -35.35883 -34.65032 -33.28417
-32.19144 -31.56949 -29.79403 -29.23983 -28.75083 -25.98185 -25.02212 -23.87344
-22.89387 -22.31190 -21.40581 -21.07314 -20.38984 -19.80008 -18.98914 -18.75431
-17.49873 -17.26723 -16.79436 -16.34598 -15.91838 -15.73898 -15.42923 -15.00616
-14.96231 -14.88893 -14.67583 -14.52495 -14.41671 -14.11905 -14.10374 -13.94652
-13.68503 -13.63464 -13.47908 -13.44855 -12.91601 -12.83932 -12.56870 -12.30692
-12.18309 -11.96714 -11.93533 -11.85968 -11.74130 -11.38727 -11.25879 -11.08769
-11.00108 -10.95636 -10.71285 -10.44336 -9.98862 -9.28287 -7.99746 -5.34119
0.21053 0.81825 1.31644 1.32756 1.43647 1.49996 1.72914 2.24742
2.50640 3.06926 3.19247 3.32444 3.45517 3.68480 3.81371 3.87518
3.90230 3.99749 4.13008 4.17851 4.29001 4.42958 4.43959 4.49699
4.50520 4.54615 4.56588 4.57189 4.68263 4.70699 4.73559 4.76094
4.84442 4.90646 4.96420 5.05046 5.07225 5.14922 5.25694 5.28629
5.35712 5.37142 5.42864 5.51742 5.59080 5.68022 5.78685 6.22207
6.42296 7.07778 7.09680 7.11464 7.83729 8.03145 9.21077
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.008452 B = 0.005670 C = 0.003755
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3311.880014 B = 4936.877442 C = 7455.756972
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C 0.059 3.941
3 N -0.377 5.377
4 O 0.087 5.913
5 C 0.031 3.969
6 C -0.096 4.096
7 C -0.276 4.276
8 C 0.608 3.392
9 O -0.551 6.551
10 N -0.693 5.693
11 C 0.150 3.850
12 H 0.074 0.926
13 C 0.147 3.853
14 N -0.754 5.754
15 C -0.230 4.230
16 H 0.059 0.941
17 C -0.064 4.064
18 N -0.984 5.984
19 Si 0.945 3.055
20 H -0.288 1.288
21 H -0.298 1.298
22 H -0.230 1.230
23 C -0.086 4.086
24 C -0.114 4.114
25 C -0.115 4.115
26 C -0.115 4.115
27 C -0.117 4.117
28 C -0.099 4.099
29 H 0.102 0.898
30 H 0.085 0.915
31 H 0.094 0.906
32 H 0.116 0.884
33 H 0.103 0.897
34 H 0.093 0.907
35 H 0.408 0.592
36 H 0.042 0.958
37 H 0.049 0.951
38 H 0.365 0.635
39 H 0.256 0.744
40 H 0.085 0.915
41 H 0.060 0.940
42 H 0.064 0.936
43 H 0.063 0.937
44 H 0.067 0.933
45 H 0.069 0.931
46 H 0.060 0.940
47 H 0.062 0.938
48 H 0.060 0.940
49 H 0.047 0.953
50 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.626 10.216 11.474 21.913
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.103 4.103
3 N -0.086 5.086
4 O 0.029 5.971
5 C -0.033 4.033
6 C -0.153 4.153
7 C -0.283 4.283
8 C 0.393 3.607
9 O -0.429 6.429
10 N -0.343 5.343
11 C 0.045 3.955
12 H 0.092 0.908
13 C 0.021 3.979
14 N -0.400 5.400
15 C -0.360 4.360
16 H 0.077 0.923
17 C -0.255 4.255
18 N -0.635 5.635
19 Si 0.773 3.227
20 H -0.215 1.215
21 H -0.225 1.225
22 H -0.155 1.155
23 C -0.106 4.106
24 C -0.151 4.151
25 C -0.152 4.152
26 C -0.152 4.152
27 C -0.154 4.154
28 C -0.137 4.137
29 H 0.120 0.880
30 H 0.104 0.896
31 H 0.112 0.888
32 H 0.134 0.866
33 H 0.122 0.878
34 H 0.112 0.888
35 H 0.244 0.756
36 H 0.059 0.941
37 H 0.066 0.934
38 H 0.199 0.801
39 H 0.065 0.935
40 H 0.103 0.897
41 H 0.079 0.921
42 H 0.082 0.918
43 H 0.081 0.919
44 H 0.086 0.914
45 H 0.088 0.912
46 H 0.078 0.922
47 H 0.081 0.919
48 H 0.079 0.921
49 H 0.066 0.934
50 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -15.909 10.977 12.014 22.757
hybrid contribution 1.270 -0.391 -0.049 1.329
sum -14.639 10.586 11.964 21.668
Atomic orbital electron populations
1.20376 0.83174 1.04821 1.05006 1.25180 0.99730 0.85829 0.99606
1.73579 0.89427 1.23976 1.21635 1.84512 1.21489 1.22795 1.68288
1.24980 0.98034 0.83487 0.96783 1.20867 0.89042 1.00146 1.05258
1.21993 0.93561 0.95337 1.17422 1.16764 0.76087 0.83914 0.83910
1.90803 1.51682 1.68326 1.32132 1.45923 1.68986 1.11214 1.08204
1.21273 0.96033 0.80087 0.98089 0.90816 1.21162 0.83611 0.98251
0.94886 1.42625 1.06234 1.66562 1.24562 1.18992 0.92038 1.26608
0.98411 0.92344 1.25502 0.97691 1.02564 0.99773 1.69891 1.09986
1.52713 1.30876 0.85610 0.78680 0.79509 0.78864 1.21455 1.22458
1.15454 1.21469 0.91821 1.01102 0.96215 1.21609 0.95726 1.00547
0.97218 1.21501 0.94788 1.01205 0.97727 1.21511 0.99937 0.99578
0.94184 1.21542 0.94479 1.00975 0.98428 1.21529 0.95777 1.00363
0.95998 0.88000 0.89625 0.88767 0.86575 0.87812 0.88827 0.75594
0.94051 0.93363 0.80140 0.93517 0.89669 0.92132 0.91771 0.91858
0.91384 0.91224 0.92162 0.91903 0.92115 0.93442 0.92951
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.32 10.49 71.24 0.75 -0.57 16
2 C 0.06 1.44 7.59 45.16 0.34 1.79 16
3 N -0.38 -10.09 12.01 -44.78 -0.54 -10.63 16
4 O 0.09 2.28 11.06 77.00 0.85 3.13 16
5 C 0.03 0.77 7.55 25.48 0.19 0.97 16
6 C -0.10 -2.04 10.33 71.23 0.74 -1.30 16
7 C -0.28 -7.35 6.24 -18.74 -0.12 -7.47 16
8 C 0.61 17.20 5.98 86.66 0.52 17.72 16
9 O -0.55 -18.33 14.22 -4.04 -0.06 -18.39 16
10 N -0.69 -18.35 3.64 -445.81 -1.62 -19.97 16
11 C 0.15 4.11 2.16 45.00 0.10 4.21 16
12 H 0.07 2.31 7.58 -2.39 -0.02 2.30 16
13 C 0.15 4.87 5.60 86.38 0.48 5.35 16
14 N -0.75 -31.88 5.24 -343.43 -1.80 -33.68 16
15 C -0.23 -12.29 10.47 84.03 0.88 -11.41 16
16 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16
17 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16
18 N -0.98 -61.24 13.97 21.65 0.30 -60.94 16
19 Si 0.95 42.25 27.74 68.60 1.90 44.15 16
20 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16
21 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16
22 H -0.23 -8.49 4.46 99.48 0.44 -8.05 16
23 C -0.09 -1.92 2.07 -10.79 -0.02 -1.94 16
24 C -0.11 -2.22 4.70 30.59 0.14 -2.08 16
25 C -0.11 -1.85 5.92 30.59 0.18 -1.67 16
26 C -0.11 -1.74 5.92 30.59 0.18 -1.56 16
27 C -0.12 -2.06 5.92 30.59 0.18 -1.88 16
28 C -0.10 -2.22 3.73 30.59 0.11 -2.11 16
29 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16
30 H 0.09 1.46 7.57 -2.39 -0.02 1.45 16
31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16
32 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16
33 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16
34 H 0.09 2.26 6.09 -2.39 -0.01 2.24 16
35 H 0.41 10.53 8.59 -92.71 -0.80 9.74 16
36 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16
37 H 0.05 1.55 6.17 -2.39 -0.01 1.53 16
38 H 0.37 14.89 5.20 -92.71 -0.48 14.41 16
39 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16
40 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16
41 H 0.06 1.19 7.60 -2.39 -0.02 1.17 16
42 H 0.06 1.36 6.32 -2.39 -0.02 1.34 16
43 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16
44 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16
45 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16
46 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16
47 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16
48 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16
49 H 0.05 1.27 7.52 -2.39 -0.02 1.25 16
50 H 0.05 1.26 5.20 -2.38 -0.01 1.25 16
Total: -1.00 -68.04 388.65 3.59 -64.45
By element:
Atomic # 1 Polarization: 37.53 SS G_CDS: -0.58 Total: 36.95 kcal
Atomic # 6 Polarization: -10.21 SS G_CDS: 5.13 Total: -5.08 kcal
Atomic # 7 Polarization: -121.56 SS G_CDS: -3.66 Total: -125.22 kcal
Atomic # 8 Polarization: -16.05 SS G_CDS: 0.79 Total: -15.26 kcal
Atomic # 14 Polarization: 42.25 SS G_CDS: 1.90 Total: 44.15 kcal
Total: -68.04 3.59 -64.45 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001732475686.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.493 kcal
(2) G-P(sol) polarization free energy of solvation -68.044 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.551 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.452 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.959 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds