Wall clock time and date at job start Tue Mar 31 2020 19:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34250 * 126.52843 * 2 1 4 4 C 1.34044 * 108.22981 * 180.02562 * 3 2 1 5 5 C 1.50700 * 125.38315 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46885 * 299.98091 * 5 4 3 7 7 C 1.53005 * 109.46953 * 59.97630 * 5 4 3 8 8 N 1.29938 * 109.24276 * 359.74856 * 4 3 2 9 9 C 1.36065 * 108.47355 * 0.40185 * 8 4 3 10 10 C 1.47421 * 126.44468 * 179.86163 * 9 8 4 11 11 O 1.21620 * 119.99815 * 185.44255 * 10 9 8 12 12 N 1.34778 * 120.00446 * 5.44841 * 10 9 8 13 13 C 1.46498 * 119.99795 * 5.32632 * 12 10 9 14 14 C 1.46498 * 120.00202 * 185.33191 * 12 10 9 15 15 H 1.09006 * 109.46980 * 359.97438 * 14 12 10 16 16 C 1.52994 * 109.47034 * 239.99846 * 14 12 10 17 17 N 1.46500 * 109.47573 * 54.99732 * 16 14 12 18 18 C 1.36934 * 120.00433 * 179.72470 * 17 16 14 19 19 H 1.08009 * 119.99580 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00313 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99723 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00274 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46944 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46793 * 119.99643 * 22 20 18 25 25 H 1.48496 * 109.46946 * 240.00025 * 22 20 18 26 26 C 1.52996 * 109.47188 * 119.99756 * 14 12 10 27 27 C 1.53007 * 117.49893 * 248.74737 * 26 14 12 28 28 C 1.52994 * 117.50034 * 180.08962 * 26 14 12 29 29 H 1.08998 * 109.47050 * 269.96110 * 1 2 3 30 30 H 1.09002 * 109.46648 * 29.96013 * 1 2 3 31 31 H 1.08998 * 109.47095 * 149.95927 * 1 2 3 32 32 H 1.08994 * 109.47521 * 179.97438 * 5 4 3 33 33 H 1.08994 * 109.47182 * 59.99620 * 6 5 4 34 34 H 1.09005 * 109.46756 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.46765 * 299.99035 * 6 5 4 36 36 H 1.08993 * 109.47006 * 60.00419 * 7 5 4 37 37 H 1.08996 * 109.46792 * 180.02562 * 7 5 4 38 38 H 1.09001 * 109.47170 * 300.00076 * 7 5 4 39 39 H 1.08996 * 109.47761 * 275.29911 * 13 12 10 40 40 H 1.09003 * 109.47208 * 35.29436 * 13 12 10 41 41 H 1.09002 * 109.46903 * 155.29431 * 13 12 10 42 42 H 1.09008 * 109.47133 * 294.99658 * 16 14 12 43 43 H 1.09000 * 109.47128 * 175.00048 * 16 14 12 44 44 H 0.96998 * 119.99355 * 0.02562 * 17 16 14 45 45 H 0.96999 * 119.99735 * 180.02562 * 21 20 18 46 46 H 1.09002 * 115.55430 * 34.41095 * 26 14 12 47 47 H 1.09000 * 117.49522 * 359.97438 * 27 26 14 48 48 H 1.08994 * 117.49882 * 145.01978 * 27 26 14 49 49 H 1.09002 * 117.50165 * 214.98215 * 28 26 14 50 50 H 1.09006 * 117.49885 * 359.97305 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 -0.0006 5 6 4.7930 1.5505 -0.0002 6 6 4.7767 2.4342 -1.2491 7 6 4.7767 2.4332 1.2494 8 7 3.6002 -0.6413 0.0045 9 6 2.3170 -1.0937 -0.0006 10 6 1.8853 -2.5033 -0.0004 11 8 0.7051 -2.7778 -0.1052 12 7 2.7984 -3.4877 0.1160 13 6 4.2048 -3.1573 0.3592 14 6 2.3846 -4.8882 -0.0009 15 1 1.3103 -4.9360 -0.1792 16 6 2.7194 -5.6287 1.2954 17 7 2.1066 -4.9311 2.4286 18 6 2.2661 -5.4167 3.6990 19 1 2.8440 -6.3138 3.8656 20 6 1.6850 -4.7561 4.7726 21 7 0.9812 -3.6625 4.5696 22 14 1.9020 -5.4189 6.5056 23 1 2.7296 -6.6512 6.4642 24 1 2.5767 -4.3968 7.3455 25 1 0.5717 -5.7358 7.0844 26 6 3.1255 -5.5432 -1.1683 27 6 2.3032 -5.9290 -2.3995 28 6 2.8271 -7.0157 -1.4573 29 1 -0.3633 -0.0007 1.0276 30 1 -0.3633 0.8904 -0.5132 31 1 -0.3633 -0.8896 -0.5145 32 1 5.6944 0.9377 -0.0004 33 1 3.8753 3.0469 -1.2489 34 1 5.6548 3.0801 -1.2486 35 1 4.7884 1.8053 -2.1393 36 1 4.7883 1.8037 2.1391 37 1 5.6547 3.0791 1.2494 38 1 3.8753 3.0461 1.2496 39 1 4.6983 -2.9480 -0.5898 40 1 4.2658 -2.2790 1.0018 41 1 4.6967 -3.9991 0.8467 42 1 3.8009 -5.6577 1.4284 43 1 2.3324 -6.6463 1.2429 44 1 1.5842 -4.1277 2.2785 45 1 0.5754 -3.2007 5.3199 46 1 4.1450 -5.1945 -1.3332 47 1 1.2343 -5.7166 -2.3776 48 1 2.7818 -5.8345 -3.3742 49 1 3.6503 -7.6357 -1.8125 50 1 2.1033 -7.5179 -0.8155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734300977.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:49 Heat of formation + Delta-G solvation = 26.201913 kcal Electronic energy + Delta-G solvation = -30452.284234 eV Core-core repulsion = 26482.799795 eV Total energy + Delta-G solvation = -3969.484439 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.34031 -39.61144 -37.46292 -35.93374 -35.12345 -34.66903 -33.75004 -31.82132 -31.10539 -28.41425 -27.48466 -27.11087 -26.19221 -24.36540 -23.47158 -22.57651 -22.28873 -21.50323 -21.11385 -19.59571 -18.73270 -17.21461 -17.06825 -16.80436 -16.37420 -15.94585 -15.11493 -14.89171 -14.72085 -14.62124 -14.36513 -13.90305 -13.56356 -13.47129 -13.24324 -13.13269 -12.95373 -12.83641 -12.57380 -12.47368 -12.36459 -12.03121 -11.98380 -11.68578 -11.56338 -11.48526 -11.39417 -11.30046 -11.02629 -10.99540 -10.80274 -10.64650 -10.32661 -10.27212 -10.05994 -9.74793 -9.59573 -9.51289 -8.81133 -8.64880 -8.07137 -6.82770 -5.67402 -2.96277 1.29315 2.19679 2.55479 3.29067 3.46954 3.51981 3.54595 3.66935 3.82249 4.01921 4.54992 4.62861 4.74625 4.75580 4.87171 4.88238 5.04137 5.10677 5.18371 5.30368 5.31572 5.40021 5.50392 5.51039 5.60029 5.62227 5.63977 5.66426 5.74329 5.78125 5.84655 5.90683 5.91900 5.96043 5.99296 6.03913 6.10603 6.13122 6.21468 6.27530 6.33017 6.40540 6.53860 6.61763 6.82024 7.10080 7.61353 7.76099 7.85745 8.50082 8.57798 9.61631 10.21146 10.56734 11.54906 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008414 B = 0.004330 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.836850 B = 6465.460420 C = 8299.169206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.038 3.962 3 O -0.196 6.196 4 C 0.187 3.813 5 C 0.006 3.994 6 C -0.149 4.149 7 C -0.151 4.151 8 N -0.447 5.447 9 C -0.063 4.063 10 C 0.605 3.395 11 O -0.535 6.535 12 N -0.577 5.577 13 C 0.093 3.907 14 C 0.163 3.837 15 H 0.101 0.899 16 C 0.148 3.852 17 N -0.728 5.728 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.929 5.929 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.292 1.292 26 C -0.157 4.157 27 C -0.179 4.179 28 C -0.170 4.170 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.022 0.978 43 H 0.029 0.971 44 H 0.387 0.613 45 H 0.253 0.747 46 H 0.105 0.895 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.493 10.189 -15.296 19.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.018 4.018 3 O -0.084 6.084 4 C -0.022 4.022 5 C -0.014 4.014 6 C -0.207 4.207 7 C -0.209 4.209 8 N -0.177 5.177 9 C -0.183 4.183 10 C 0.393 3.607 11 O -0.413 6.413 12 N -0.307 5.307 13 C -0.050 4.050 14 C 0.059 3.941 15 H 0.119 0.881 16 C 0.020 3.980 17 N -0.372 5.372 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.578 5.578 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.219 1.219 26 C -0.177 4.177 27 C -0.216 4.216 28 C -0.207 4.207 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.040 0.960 43 H 0.047 0.953 44 H 0.221 0.779 45 H 0.063 0.937 46 H 0.123 0.877 47 H 0.113 0.887 48 H 0.108 0.892 49 H 0.111 0.889 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.474 9.564 -15.195 19.448 hybrid contribution -0.442 0.316 1.110 1.236 sum 7.033 9.880 -14.085 18.587 Atomic orbital electron populations 1.20607 0.82615 1.04995 1.05014 1.23703 0.95044 0.83246 0.99776 1.84248 1.17914 1.36313 1.69899 1.26180 0.84033 0.90450 1.01555 1.19715 0.89989 0.94220 0.97438 1.21886 1.02983 0.99477 0.96305 1.21904 1.02939 0.99575 0.96499 1.70981 1.21595 1.08265 1.16839 1.21444 0.88606 0.95639 1.12567 1.16658 0.85144 0.82469 0.76462 1.90755 1.16221 1.82817 1.51525 1.47311 1.08782 1.05279 1.69333 1.21834 0.80435 1.02071 1.00654 1.20949 0.99821 0.79364 0.93918 0.88143 1.20931 0.96363 0.94500 0.86231 1.42316 1.62039 1.31340 1.01530 1.19253 1.26650 1.07046 0.83867 0.91240 1.24733 1.00673 0.97765 0.97790 1.69711 1.38757 1.19402 1.29896 0.86151 0.77186 0.77877 0.85199 1.20588 1.22014 1.21931 1.22538 1.00261 0.97853 0.97001 1.23010 1.00251 1.04027 0.94348 1.22925 1.03582 0.91163 1.03066 0.88758 0.90608 0.86793 0.86868 0.91902 0.90969 0.91989 0.91628 0.90963 0.91874 0.93402 0.89663 0.91418 0.96042 0.95289 0.77905 0.93743 0.87671 0.88714 0.89237 0.88868 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.94 36.01 0.36 -0.68 16 2 C 0.04 0.62 7.44 -35.08 -0.26 0.36 16 3 O -0.20 -2.87 10.73 6.54 0.07 -2.80 16 4 C 0.19 2.58 6.81 -13.08 -0.09 2.49 16 5 C 0.01 0.05 3.39 -91.77 -0.31 -0.26 16 6 C -0.15 -1.09 9.18 37.16 0.34 -0.75 16 7 C -0.15 -1.28 9.18 37.16 0.34 -0.94 16 8 N -0.45 -7.30 8.09 -7.66 -0.06 -7.36 16 9 C -0.06 -1.14 6.60 -83.02 -0.55 -1.69 16 10 C 0.61 12.27 7.36 -12.52 -0.09 12.17 16 11 O -0.54 -11.80 14.12 5.26 0.07 -11.73 16 12 N -0.58 -10.89 2.24 -175.21 -0.39 -11.29 16 13 C 0.09 1.57 8.21 59.85 0.49 2.06 16 14 C 0.16 3.01 2.41 -67.94 -0.16 2.84 16 15 H 0.10 2.06 6.67 -51.93 -0.35 1.72 16 16 C 0.15 3.15 5.29 -4.04 -0.02 3.13 16 17 N -0.73 -19.55 5.43 -59.91 -0.33 -19.88 16 18 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 19 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -29.37 13.06 55.49 0.72 -28.64 16 22 Si 0.90 23.10 29.55 -169.99 -5.02 18.08 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 C -0.16 -2.28 5.21 -90.62 -0.47 -2.75 16 27 C -0.18 -2.30 10.18 -26.69 -0.27 -2.57 16 28 C -0.17 -2.15 9.80 -26.70 -0.26 -2.41 16 29 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.11 1.69 6.38 -51.93 -0.33 1.36 16 32 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.71 8.13 -51.93 -0.42 0.28 16 40 H 0.08 1.56 5.88 -51.93 -0.31 1.26 16 41 H 0.07 1.13 6.54 -51.93 -0.34 0.79 16 42 H 0.02 0.46 6.87 -51.92 -0.36 0.10 16 43 H 0.03 0.62 7.48 -51.93 -0.39 0.23 16 44 H 0.39 11.31 7.06 -40.82 -0.29 11.02 16 45 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 46 H 0.11 1.44 7.49 -51.93 -0.39 1.05 16 47 H 0.09 1.28 8.05 -51.93 -0.42 0.87 16 48 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 49 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 50 H 0.10 1.32 7.67 -51.93 -0.40 0.92 16 LS Contribution 404.95 15.07 6.10 6.10 Total: -1.00 -34.64 404.95 -8.22 -42.86 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -8.18 Total: 11.20 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -1.21 Total: 3.46 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: -0.06 Total: -67.17 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.14 Total: -14.53 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.64 -8.22 -42.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734300977.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.062 kcal (2) G-P(sol) polarization free energy of solvation -34.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds