Wall clock time and date at job start Tue Mar 31 2020 19:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34250 * 126.52843 * 2 1 4 4 C 1.34044 * 108.22981 * 180.02562 * 3 2 1 5 5 C 1.50700 * 125.38315 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46885 * 299.98091 * 5 4 3 7 7 C 1.53005 * 109.46953 * 59.97630 * 5 4 3 8 8 N 1.29938 * 109.24276 * 359.74856 * 4 3 2 9 9 C 1.36065 * 108.47355 * 0.40185 * 8 4 3 10 10 C 1.47421 * 126.44468 * 179.86163 * 9 8 4 11 11 O 1.21620 * 119.99815 * 185.44255 * 10 9 8 12 12 N 1.34778 * 120.00446 * 5.44841 * 10 9 8 13 13 C 1.46498 * 119.99795 * 5.32632 * 12 10 9 14 14 C 1.46498 * 120.00202 * 185.33191 * 12 10 9 15 15 H 1.09006 * 109.46980 * 359.97438 * 14 12 10 16 16 C 1.52994 * 109.47034 * 239.99846 * 14 12 10 17 17 N 1.46500 * 109.47573 * 54.99732 * 16 14 12 18 18 C 1.36934 * 120.00433 * 179.72470 * 17 16 14 19 19 H 1.08009 * 119.99580 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00313 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99723 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00274 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46944 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46793 * 119.99643 * 22 20 18 25 25 H 1.48496 * 109.46946 * 240.00025 * 22 20 18 26 26 C 1.52996 * 109.47188 * 119.99756 * 14 12 10 27 27 C 1.53007 * 117.49893 * 248.74737 * 26 14 12 28 28 C 1.52994 * 117.50034 * 180.08962 * 26 14 12 29 29 H 1.08998 * 109.47050 * 269.96110 * 1 2 3 30 30 H 1.09002 * 109.46648 * 29.96013 * 1 2 3 31 31 H 1.08998 * 109.47095 * 149.95927 * 1 2 3 32 32 H 1.08994 * 109.47521 * 179.97438 * 5 4 3 33 33 H 1.08994 * 109.47182 * 59.99620 * 6 5 4 34 34 H 1.09005 * 109.46756 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.46765 * 299.99035 * 6 5 4 36 36 H 1.08993 * 109.47006 * 60.00419 * 7 5 4 37 37 H 1.08996 * 109.46792 * 180.02562 * 7 5 4 38 38 H 1.09001 * 109.47170 * 300.00076 * 7 5 4 39 39 H 1.08996 * 109.47761 * 275.29911 * 13 12 10 40 40 H 1.09003 * 109.47208 * 35.29436 * 13 12 10 41 41 H 1.09002 * 109.46903 * 155.29431 * 13 12 10 42 42 H 1.09008 * 109.47133 * 294.99658 * 16 14 12 43 43 H 1.09000 * 109.47128 * 175.00048 * 16 14 12 44 44 H 0.96998 * 119.99355 * 0.02562 * 17 16 14 45 45 H 0.96999 * 119.99735 * 180.02562 * 21 20 18 46 46 H 1.09002 * 115.55430 * 34.41095 * 26 14 12 47 47 H 1.09000 * 117.49522 * 359.97438 * 27 26 14 48 48 H 1.08994 * 117.49882 * 145.01978 * 27 26 14 49 49 H 1.09002 * 117.50165 * 214.98215 * 28 26 14 50 50 H 1.09006 * 117.49885 * 359.97305 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 -0.0006 5 6 4.7930 1.5505 -0.0002 6 6 4.7767 2.4342 -1.2491 7 6 4.7767 2.4332 1.2494 8 7 3.6002 -0.6413 0.0045 9 6 2.3170 -1.0937 -0.0006 10 6 1.8853 -2.5033 -0.0004 11 8 0.7051 -2.7778 -0.1052 12 7 2.7984 -3.4877 0.1160 13 6 4.2048 -3.1573 0.3592 14 6 2.3846 -4.8882 -0.0009 15 1 1.3103 -4.9360 -0.1792 16 6 2.7194 -5.6287 1.2954 17 7 2.1066 -4.9311 2.4286 18 6 2.2661 -5.4167 3.6990 19 1 2.8440 -6.3138 3.8656 20 6 1.6850 -4.7561 4.7726 21 7 0.9812 -3.6625 4.5696 22 14 1.9020 -5.4189 6.5056 23 1 2.7296 -6.6512 6.4642 24 1 2.5767 -4.3968 7.3455 25 1 0.5717 -5.7358 7.0844 26 6 3.1255 -5.5432 -1.1683 27 6 2.3032 -5.9290 -2.3995 28 6 2.8271 -7.0157 -1.4573 29 1 -0.3633 -0.0007 1.0276 30 1 -0.3633 0.8904 -0.5132 31 1 -0.3633 -0.8896 -0.5145 32 1 5.6944 0.9377 -0.0004 33 1 3.8753 3.0469 -1.2489 34 1 5.6548 3.0801 -1.2486 35 1 4.7884 1.8053 -2.1393 36 1 4.7883 1.8037 2.1391 37 1 5.6547 3.0791 1.2494 38 1 3.8753 3.0461 1.2496 39 1 4.6983 -2.9480 -0.5898 40 1 4.2658 -2.2790 1.0018 41 1 4.6967 -3.9991 0.8467 42 1 3.8009 -5.6577 1.4284 43 1 2.3324 -6.6463 1.2429 44 1 1.5842 -4.1277 2.2785 45 1 0.5754 -3.2007 5.3199 46 1 4.1450 -5.1945 -1.3332 47 1 1.2343 -5.7166 -2.3776 48 1 2.7818 -5.8345 -3.3742 49 1 3.6503 -7.6357 -1.8125 50 1 2.1033 -7.5179 -0.8155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734300977.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:48 Heat of formation + Delta-G solvation = 3.823058 kcal Electronic energy + Delta-G solvation = -30453.254654 eV Core-core repulsion = 26482.799795 eV Total energy + Delta-G solvation = -3970.454859 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.54163 -41.09459 -38.80906 -36.80402 -36.58734 -36.11603 -35.43334 -33.14837 -32.96081 -30.11269 -28.39505 -28.10231 -27.63204 -26.16987 -24.86007 -23.83722 -23.42788 -22.90650 -22.25264 -20.89283 -20.11012 -19.17113 -18.57152 -18.03481 -17.70821 -17.07590 -16.64925 -16.44470 -16.13419 -15.89216 -15.43936 -15.29914 -15.07922 -14.82801 -14.71076 -14.56512 -14.35796 -13.88433 -13.81548 -13.71067 -13.58658 -13.20370 -13.15038 -13.04948 -12.90622 -12.78730 -12.57229 -12.43966 -12.38566 -12.22314 -12.11537 -12.07914 -11.98292 -11.80340 -11.64598 -11.37832 -11.05549 -10.95686 -10.89276 -9.94341 -9.51425 -9.02292 -7.95148 -5.25628 0.00870 0.96480 1.40712 1.43224 1.45270 1.55371 1.88840 2.22192 2.52936 2.73457 2.90530 3.37587 3.47169 3.57449 3.63743 3.91790 3.96544 4.06141 4.07613 4.11806 4.15757 4.24678 4.26503 4.32273 4.38465 4.45977 4.51299 4.58654 4.75883 4.76617 4.77919 4.79415 4.84437 4.87133 4.89727 4.90730 5.02157 5.02476 5.07152 5.07978 5.19968 5.26689 5.29747 5.30321 5.33075 5.45387 5.62371 6.24033 6.27840 6.48712 7.06320 7.30458 8.05916 8.30202 9.28392 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008414 B = 0.004330 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.836850 B = 6465.460420 C = 8299.169206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.037 3.963 3 O -0.192 6.192 4 C 0.196 3.804 5 C 0.005 3.995 6 C -0.143 4.143 7 C -0.148 4.148 8 N -0.466 5.466 9 C -0.096 4.096 10 C 0.593 3.407 11 O -0.568 6.568 12 N -0.579 5.579 13 C 0.101 3.899 14 C 0.171 3.829 15 H 0.072 0.928 16 C 0.149 3.851 17 N -0.742 5.742 18 C -0.242 4.242 19 H 0.079 0.921 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.976 3.024 23 H -0.262 1.262 24 H -0.293 1.293 25 H -0.294 1.294 26 C -0.169 4.169 27 C -0.171 4.171 28 C -0.157 4.157 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.032 0.968 43 H 0.035 0.965 44 H 0.371 0.629 45 H 0.249 0.751 46 H 0.120 0.880 47 H 0.080 0.920 48 H 0.114 0.886 49 H 0.121 0.879 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.728 10.462 -16.213 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.020 4.020 3 O -0.080 6.080 4 C -0.013 4.013 5 C -0.015 4.015 6 C -0.200 4.200 7 C -0.206 4.206 8 N -0.195 5.195 9 C -0.215 4.215 10 C 0.382 3.618 11 O -0.448 6.448 12 N -0.308 5.308 13 C -0.041 4.041 14 C 0.068 3.932 15 H 0.090 0.910 16 C 0.022 3.978 17 N -0.385 5.385 18 C -0.374 4.374 19 H 0.097 0.903 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.805 3.195 23 H -0.186 1.186 24 H -0.221 1.221 25 H -0.222 1.222 26 C -0.188 4.188 27 C -0.207 4.207 28 C -0.194 4.194 29 H 0.107 0.893 30 H 0.131 0.869 31 H 0.117 0.883 32 H 0.142 0.858 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.202 0.798 45 H 0.057 0.943 46 H 0.138 0.862 47 H 0.099 0.901 48 H 0.132 0.868 49 H 0.139 0.861 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.761 9.781 -16.140 21.247 hybrid contribution -1.097 0.256 1.352 1.760 sum 8.663 10.037 -14.788 19.862 Atomic orbital electron populations 1.20625 0.81308 1.06056 1.04896 1.24058 0.96010 0.83183 0.98764 1.84277 1.18219 1.35610 1.69864 1.27277 0.84761 0.90445 0.98824 1.20078 0.88112 0.94207 0.99066 1.21875 1.04266 0.99214 0.94675 1.21909 1.04326 0.99358 0.94999 1.70932 1.20707 1.09520 1.18353 1.21373 0.90079 0.95137 1.14912 1.17062 0.85004 0.83626 0.76137 1.90717 1.17404 1.83540 1.53162 1.47439 1.09349 1.05236 1.68777 1.21820 0.79494 1.01250 1.01577 1.20775 0.98854 0.79430 0.94170 0.90997 1.21097 0.96268 0.94529 0.85954 1.42534 1.62232 1.31160 1.02536 1.19696 1.25808 1.06969 0.84941 0.90285 1.25625 1.00955 0.98269 1.02080 1.69901 1.40343 1.21091 1.30802 0.85031 0.76997 0.77709 0.79762 1.18624 1.22064 1.22152 1.22405 1.00681 0.99336 0.96392 1.23057 0.99467 1.03385 0.94840 1.23020 1.03921 0.90268 1.02196 0.89311 0.86921 0.88305 0.85790 0.92139 0.88096 0.92440 0.93568 0.87863 0.92148 0.90986 0.91298 0.91402 0.94999 0.94742 0.79764 0.94270 0.86216 0.90099 0.86767 0.86084 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.05 9.94 71.24 0.71 -1.34 16 2 C 0.04 1.22 7.44 25.19 0.19 1.41 16 3 O -0.19 -5.58 10.73 0.50 0.01 -5.57 16 4 C 0.20 5.34 6.81 88.39 0.60 5.94 16 5 C 0.00 0.08 3.39 -11.54 -0.04 0.04 16 6 C -0.14 -1.72 9.18 71.98 0.66 -1.06 16 7 C -0.15 -2.24 9.18 71.98 0.66 -1.58 16 8 N -0.47 -15.41 8.09 -293.04 -2.37 -17.78 16 9 C -0.10 -3.65 6.60 40.41 0.27 -3.39 16 10 C 0.59 25.31 7.36 86.66 0.64 25.95 16 11 O -0.57 -26.76 14.12 -4.10 -0.06 -26.82 16 12 N -0.58 -22.52 2.24 -826.48 -1.85 -24.37 16 13 C 0.10 3.42 8.21 127.77 1.05 4.47 16 14 C 0.17 6.46 2.41 44.99 0.11 6.57 16 15 H 0.07 3.12 6.67 -2.38 -0.02 3.11 16 16 C 0.15 6.39 5.29 86.38 0.46 6.85 16 17 N -0.74 -40.98 5.43 -343.45 -1.87 -42.84 16 18 C -0.24 -14.25 9.99 84.03 0.84 -13.41 16 19 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 20 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 21 N -0.97 -63.25 13.06 21.65 0.28 -62.97 16 22 Si 0.98 48.04 29.55 68.60 2.03 50.07 16 23 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 25 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 26 C -0.17 -4.71 5.21 -10.79 -0.06 -4.77 16 27 C -0.17 -4.12 10.18 30.62 0.31 -3.81 16 28 C -0.16 -3.65 9.80 30.62 0.30 -3.35 16 29 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.10 3.12 6.38 -2.39 -0.02 3.10 16 32 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 2.06 8.13 -2.39 -0.02 2.05 16 40 H 0.07 2.59 5.88 -2.39 -0.01 2.58 16 41 H 0.07 2.25 6.54 -2.39 -0.02 2.24 16 42 H 0.03 1.33 6.87 -2.38 -0.02 1.31 16 43 H 0.03 1.46 7.48 -2.39 -0.02 1.44 16 44 H 0.37 22.69 7.06 -92.71 -0.65 22.03 16 45 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 46 H 0.12 3.02 7.49 -2.39 -0.02 3.00 16 47 H 0.08 2.19 8.05 -2.39 -0.02 2.17 16 48 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 50 H 0.09 2.27 7.67 -2.38 -0.02 2.25 16 Total: -1.00 -77.86 404.95 3.62 -74.25 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: 0.29 Total: 41.72 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 7.16 Total: 14.31 kcal Atomic # 7 Polarization: -142.15 SS G_CDS: -5.81 Total: -147.96 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.05 Total: -32.39 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.07 kcal Total: -77.86 3.62 -74.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734300977.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.068 kcal (2) G-P(sol) polarization free energy of solvation -77.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds