Wall clock time and date at job start Tue Mar 31 2020 19:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34247 * 126.52437 * 2 1 4 4 C 1.34049 * 108.22705 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.38237 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46890 * 60.02289 * 5 4 3 7 7 C 1.52998 * 109.47249 * 300.02822 * 5 4 3 8 8 N 1.29930 * 109.24386 * 0.26432 * 4 3 2 9 9 C 1.36067 * 108.47804 * 359.58128 * 8 4 3 10 10 C 1.47416 * 126.45134 * 180.20090 * 9 8 4 11 11 O 1.21618 * 119.99802 * 175.28562 * 10 9 8 12 12 N 1.34778 * 120.00241 * 355.28323 * 10 9 8 13 13 C 1.46500 * 119.99440 * 2.59559 * 12 10 9 14 14 C 1.46498 * 119.99840 * 182.60014 * 12 10 9 15 15 H 1.09001 * 109.47478 * 0.02562 * 14 12 10 16 16 C 1.53003 * 109.47038 * 120.00260 * 14 12 10 17 17 N 1.46507 * 109.46733 * 304.99559 * 16 14 12 18 18 C 1.36935 * 119.99865 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00204 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00027 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00073 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 119.99736 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47191 * 90.00279 * 22 20 18 24 24 H 1.48508 * 109.46886 * 210.00016 * 22 20 18 25 25 H 1.48502 * 109.47430 * 329.99559 * 22 20 18 26 26 C 1.53001 * 109.46744 * 239.99370 * 14 12 10 27 27 C 1.52994 * 117.50359 * 248.74788 * 26 14 12 28 28 C 1.53002 * 117.49686 * 180.08707 * 26 14 12 29 29 H 1.08997 * 109.47307 * 359.96993 * 1 2 3 30 30 H 1.09003 * 109.47317 * 119.97311 * 1 2 3 31 31 H 1.09000 * 109.46881 * 239.96906 * 1 2 3 32 32 H 1.08992 * 109.47779 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.47191 * 60.00480 * 6 5 4 34 34 H 1.09003 * 109.47084 * 300.00130 * 6 5 4 35 35 H 1.09001 * 109.47241 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.46479 * 299.99728 * 7 5 4 37 37 H 1.09003 * 109.47407 * 59.99452 * 7 5 4 38 38 H 1.08993 * 109.47349 * 179.97438 * 7 5 4 39 39 H 1.09001 * 109.47077 * 83.88394 * 13 12 10 40 40 H 1.09000 * 109.46810 * 203.87644 * 13 12 10 41 41 H 1.08996 * 109.47751 * 323.87876 * 13 12 10 42 42 H 1.08998 * 109.47750 * 64.99291 * 16 14 12 43 43 H 1.08997 * 109.46820 * 184.99931 * 16 14 12 44 44 H 0.96998 * 120.00176 * 0.02562 * 17 16 14 45 45 H 0.96994 * 120.00152 * 180.02562 * 21 20 18 46 46 H 1.09002 * 115.54897 * 34.42387 * 26 14 12 47 47 H 1.09004 * 117.49749 * 0.02562 * 27 26 14 48 48 H 1.08998 * 117.50126 * 145.02357 * 27 26 14 49 49 H 1.09003 * 117.50078 * 214.98404 * 28 26 14 50 50 H 1.08998 * 117.49782 * 0.02562 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0788 0.0000 4 6 3.5787 0.6580 -0.0006 5 6 4.7930 1.5506 -0.0002 6 6 4.7772 2.4325 1.2500 7 6 4.7761 2.4351 -1.2485 8 7 3.6002 -0.6411 -0.0066 9 6 2.3170 -1.0937 -0.0007 10 6 1.8854 -2.5032 -0.0002 11 8 0.7041 -2.7774 0.0920 12 7 2.7998 -3.4881 -0.1020 13 6 4.2266 -3.1601 -0.1558 14 6 2.3669 -4.8865 -0.1589 15 1 1.2791 -4.9326 -0.1069 16 6 2.8413 -5.5142 -1.4711 17 7 2.3644 -4.7088 -2.5982 18 6 2.6676 -5.0791 -3.8811 19 1 3.2586 -5.9648 -4.0622 20 6 2.2153 -4.3163 -4.9490 21 7 2.5062 -4.6725 -6.1823 22 14 1.1937 -2.7841 -4.6358 23 1 2.0920 -1.6096 -4.4991 24 1 0.2651 -2.5671 -5.7742 25 1 0.4117 -2.9575 -3.3854 26 6 2.9675 -5.6546 1.0202 27 6 4.0354 -6.7050 0.7087 28 6 2.6328 -7.1429 1.1378 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5134 -0.8902 31 1 -0.3633 -0.5143 0.8897 32 1 5.6944 0.9379 -0.0013 33 1 4.7893 1.8024 2.1393 34 1 3.8757 3.0453 1.2510 35 1 5.6552 3.0785 1.2501 36 1 4.7873 1.8068 -2.1391 37 1 3.8746 3.0479 -1.2474 38 1 5.6540 3.0810 -1.2480 39 1 4.6078 -3.0296 0.8570 40 1 4.7673 -3.9697 -0.6460 41 1 4.3663 -2.2370 -0.7184 42 1 3.9307 -5.5488 -1.4845 43 1 2.4446 -6.5261 -1.5541 44 1 1.8339 -3.9131 -2.4356 45 1 2.1905 -4.1393 -6.9284 46 1 3.0736 -5.0880 1.9453 47 1 4.3104 -6.8487 -0.3362 48 1 4.8438 -6.8298 1.4291 49 1 2.5190 -7.5556 2.1403 50 1 1.9851 -7.5749 0.3749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734300979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:53 Heat of formation + Delta-G solvation = 34.830035 kcal Electronic energy + Delta-G solvation = -30759.548305 eV Core-core repulsion = 26790.438009 eV Total energy + Delta-G solvation = -3969.110296 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.51363 -39.86491 -37.80618 -36.03715 -35.18638 -34.77562 -33.93767 -32.02050 -31.30302 -28.76148 -27.55482 -27.28969 -26.35945 -24.68070 -23.50173 -22.63724 -22.40163 -21.68619 -21.27976 -19.55364 -18.76348 -17.43577 -17.29493 -16.99650 -16.41644 -16.16827 -15.33590 -15.17653 -15.11770 -14.55497 -14.34670 -13.91869 -13.70395 -13.65395 -13.50598 -13.45127 -13.01965 -12.77849 -12.63605 -12.57427 -12.54606 -12.28006 -12.14850 -11.85101 -11.66242 -11.62122 -11.53252 -11.37896 -11.23143 -11.13812 -10.84777 -10.71146 -10.39551 -10.33986 -10.14194 -9.81722 -9.63882 -9.56666 -8.86389 -8.84200 -8.25438 -7.18910 -5.74668 -3.08637 1.10605 2.02012 2.39208 3.10004 3.39609 3.45058 3.46288 3.48797 3.68779 3.97522 4.44256 4.57337 4.63024 4.67200 4.70586 4.82212 4.91760 5.05455 5.10584 5.12230 5.24944 5.26206 5.27798 5.42857 5.45007 5.49031 5.53925 5.56779 5.65906 5.69047 5.76798 5.79643 5.81178 5.82866 5.86235 5.88172 5.96042 5.98202 6.00128 6.11127 6.25841 6.33733 6.44135 6.49302 6.64998 6.92427 7.44433 7.66313 8.01272 8.34887 8.44843 9.24314 9.97564 10.17975 11.43790 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008792 B = 0.004903 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3184.042842 B = 5709.389570 C = 7237.814820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.035 3.965 3 O -0.194 6.194 4 C 0.192 3.808 5 C 0.004 3.996 6 C -0.149 4.149 7 C -0.152 4.152 8 N -0.447 5.447 9 C -0.067 4.067 10 C 0.598 3.402 11 O -0.539 6.539 12 N -0.578 5.578 13 C 0.081 3.919 14 C 0.157 3.843 15 H 0.105 0.895 16 C 0.147 3.853 17 N -0.751 5.751 18 C -0.240 4.240 19 H 0.091 0.909 20 C 0.008 3.992 21 N -0.934 5.934 22 Si 0.873 3.127 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.273 1.273 26 C -0.158 4.158 27 C -0.182 4.182 28 C -0.172 4.172 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.036 0.964 43 H 0.038 0.962 44 H 0.362 0.638 45 H 0.259 0.741 46 H 0.103 0.897 47 H 0.108 0.892 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.223 11.829 18.711 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.021 4.021 3 O -0.081 6.081 4 C -0.017 4.017 5 C -0.015 4.015 6 C -0.206 4.206 7 C -0.210 4.210 8 N -0.176 5.176 9 C -0.187 4.187 10 C 0.385 3.615 11 O -0.417 6.417 12 N -0.308 5.308 13 C -0.062 4.062 14 C 0.054 3.946 15 H 0.123 0.877 16 C 0.020 3.980 17 N -0.397 5.397 18 C -0.370 4.370 19 H 0.109 0.891 20 C -0.187 4.187 21 N -0.582 5.582 22 Si 0.703 3.297 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.199 1.199 26 C -0.177 4.177 27 C -0.219 4.219 28 C -0.210 4.210 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.195 0.805 45 H 0.069 0.931 46 H 0.121 0.879 47 H 0.126 0.874 48 H 0.108 0.892 49 H 0.110 0.890 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.244 11.178 18.548 22.067 hybrid contribution -1.140 1.468 0.021 1.859 sum 3.104 12.646 18.569 22.680 Atomic orbital electron populations 1.20454 0.82591 1.03650 1.05671 1.23688 0.95083 0.83338 1.00003 1.84266 1.17946 1.36136 1.69753 1.26313 0.84021 0.90490 1.00857 1.19764 0.89904 0.94279 0.97572 1.21889 1.03078 0.99488 0.96190 1.21915 1.03053 0.99586 0.96455 1.70972 1.21281 1.08210 1.17185 1.21475 0.88790 0.95567 1.12867 1.16774 0.85285 0.82623 0.76819 1.90780 1.16321 1.83025 1.51593 1.47458 1.07474 1.05489 1.70405 1.22079 0.79445 1.03245 1.01397 1.20956 1.00733 0.79019 0.93907 0.87745 1.21117 0.97387 0.94223 0.85306 1.42652 1.64548 1.30087 1.02391 1.19039 1.27834 1.08986 0.81106 0.89128 1.24588 1.00511 0.98556 0.95071 1.69690 1.50613 1.40537 0.97346 0.86684 0.80915 0.84712 0.77384 1.21344 1.21551 1.19909 1.22515 1.04228 0.91330 0.99644 1.23204 0.92181 1.03224 1.03269 1.22968 0.99267 0.96142 1.02612 0.90413 0.88292 0.88152 0.86667 0.91941 0.91900 0.90829 0.91611 0.91879 0.90772 0.93418 0.91088 0.88434 0.94624 0.94428 0.80512 0.93126 0.87902 0.87376 0.89187 0.89013 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 9.14 36.01 0.33 -0.51 16 2 C 0.04 0.54 7.44 -35.08 -0.26 0.28 16 3 O -0.19 -2.69 10.73 6.54 0.07 -2.62 16 4 C 0.19 2.54 6.81 -13.08 -0.09 2.46 16 5 C 0.00 0.04 3.39 -91.77 -0.31 -0.27 16 6 C -0.15 -1.02 9.18 37.16 0.34 -0.68 16 7 C -0.15 -1.26 9.18 37.16 0.34 -0.92 16 8 N -0.45 -7.03 7.85 -7.65 -0.06 -7.09 16 9 C -0.07 -1.17 6.67 -83.02 -0.55 -1.72 16 10 C 0.60 11.44 7.37 -12.52 -0.09 11.35 16 11 O -0.54 -11.14 14.95 5.26 0.08 -11.06 16 12 N -0.58 -10.35 2.24 -175.20 -0.39 -10.74 16 13 C 0.08 1.29 8.92 59.85 0.53 1.83 16 14 C 0.16 2.75 2.58 -67.93 -0.18 2.58 16 15 H 0.10 2.03 6.90 -51.93 -0.36 1.67 16 16 C 0.15 2.96 4.16 -4.04 -0.02 2.95 16 17 N -0.75 -19.01 5.24 -59.90 -0.31 -19.32 16 18 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 19 H 0.09 2.79 8.06 -52.48 -0.42 2.37 16 20 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 21 N -0.93 -30.08 13.97 55.49 0.78 -29.30 16 22 Si 0.87 23.65 27.74 -169.99 -4.71 18.93 16 23 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 24 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 25 H -0.27 -7.32 6.52 56.52 0.37 -6.95 16 26 C -0.16 -2.18 5.48 -90.62 -0.50 -2.68 16 27 C -0.18 -2.25 9.59 -26.70 -0.26 -2.51 16 28 C -0.17 -2.10 9.94 -26.69 -0.27 -2.37 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 1.36 8.13 -51.93 -0.42 0.94 16 31 H 0.10 1.18 8.01 -51.93 -0.42 0.77 16 32 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.13 6.54 -51.93 -0.34 0.79 16 41 H 0.10 1.68 5.33 -51.93 -0.28 1.40 16 42 H 0.04 0.71 5.33 -51.93 -0.28 0.43 16 43 H 0.04 0.76 7.44 -51.93 -0.39 0.37 16 44 H 0.36 9.46 4.93 -40.82 -0.20 9.26 16 45 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 46 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.11 1.47 5.80 -51.93 -0.30 1.17 16 48 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.10 1.27 7.65 -51.93 -0.40 0.87 16 LS Contribution 399.39 15.07 6.02 6.02 Total: -1.00 -35.22 399.39 -7.80 -43.03 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -8.04 Total: 9.41 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.23 Total: 2.74 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: 0.01 Total: -66.46 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.15 Total: -13.68 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -4.71 Total: 18.93 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.22 -7.80 -43.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734300979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.857 kcal (2) G-P(sol) polarization free energy of solvation -35.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds