Wall clock time and date at job start Tue Mar 31 2020 19:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34247 * 126.52437 * 2 1 4 4 C 1.34049 * 108.22705 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.38237 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46890 * 60.02289 * 5 4 3 7 7 C 1.52998 * 109.47249 * 300.02822 * 5 4 3 8 8 N 1.29930 * 109.24386 * 0.26432 * 4 3 2 9 9 C 1.36067 * 108.47804 * 359.58128 * 8 4 3 10 10 C 1.47416 * 126.45134 * 180.20090 * 9 8 4 11 11 O 1.21618 * 119.99802 * 175.28562 * 10 9 8 12 12 N 1.34778 * 120.00241 * 355.28323 * 10 9 8 13 13 C 1.46500 * 119.99440 * 2.59559 * 12 10 9 14 14 C 1.46498 * 119.99840 * 182.60014 * 12 10 9 15 15 H 1.09001 * 109.47478 * 0.02562 * 14 12 10 16 16 C 1.53003 * 109.47038 * 120.00260 * 14 12 10 17 17 N 1.46507 * 109.46733 * 304.99559 * 16 14 12 18 18 C 1.36935 * 119.99865 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00204 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00027 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00073 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 119.99736 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47191 * 90.00279 * 22 20 18 24 24 H 1.48508 * 109.46886 * 210.00016 * 22 20 18 25 25 H 1.48502 * 109.47430 * 329.99559 * 22 20 18 26 26 C 1.53001 * 109.46744 * 239.99370 * 14 12 10 27 27 C 1.52994 * 117.50359 * 248.74788 * 26 14 12 28 28 C 1.53002 * 117.49686 * 180.08707 * 26 14 12 29 29 H 1.08997 * 109.47307 * 359.96993 * 1 2 3 30 30 H 1.09003 * 109.47317 * 119.97311 * 1 2 3 31 31 H 1.09000 * 109.46881 * 239.96906 * 1 2 3 32 32 H 1.08992 * 109.47779 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.47191 * 60.00480 * 6 5 4 34 34 H 1.09003 * 109.47084 * 300.00130 * 6 5 4 35 35 H 1.09001 * 109.47241 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.46479 * 299.99728 * 7 5 4 37 37 H 1.09003 * 109.47407 * 59.99452 * 7 5 4 38 38 H 1.08993 * 109.47349 * 179.97438 * 7 5 4 39 39 H 1.09001 * 109.47077 * 83.88394 * 13 12 10 40 40 H 1.09000 * 109.46810 * 203.87644 * 13 12 10 41 41 H 1.08996 * 109.47751 * 323.87876 * 13 12 10 42 42 H 1.08998 * 109.47750 * 64.99291 * 16 14 12 43 43 H 1.08997 * 109.46820 * 184.99931 * 16 14 12 44 44 H 0.96998 * 120.00176 * 0.02562 * 17 16 14 45 45 H 0.96994 * 120.00152 * 180.02562 * 21 20 18 46 46 H 1.09002 * 115.54897 * 34.42387 * 26 14 12 47 47 H 1.09004 * 117.49749 * 0.02562 * 27 26 14 48 48 H 1.08998 * 117.50126 * 145.02357 * 27 26 14 49 49 H 1.09003 * 117.50078 * 214.98404 * 28 26 14 50 50 H 1.08998 * 117.49782 * 0.02562 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0788 0.0000 4 6 3.5787 0.6580 -0.0006 5 6 4.7930 1.5506 -0.0002 6 6 4.7772 2.4325 1.2500 7 6 4.7761 2.4351 -1.2485 8 7 3.6002 -0.6411 -0.0066 9 6 2.3170 -1.0937 -0.0007 10 6 1.8854 -2.5032 -0.0002 11 8 0.7041 -2.7774 0.0920 12 7 2.7998 -3.4881 -0.1020 13 6 4.2266 -3.1601 -0.1558 14 6 2.3669 -4.8865 -0.1589 15 1 1.2791 -4.9326 -0.1069 16 6 2.8413 -5.5142 -1.4711 17 7 2.3644 -4.7088 -2.5982 18 6 2.6676 -5.0791 -3.8811 19 1 3.2586 -5.9648 -4.0622 20 6 2.2153 -4.3163 -4.9490 21 7 2.5062 -4.6725 -6.1823 22 14 1.1937 -2.7841 -4.6358 23 1 2.0920 -1.6096 -4.4991 24 1 0.2651 -2.5671 -5.7742 25 1 0.4117 -2.9575 -3.3854 26 6 2.9675 -5.6546 1.0202 27 6 4.0354 -6.7050 0.7087 28 6 2.6328 -7.1429 1.1378 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5134 -0.8902 31 1 -0.3633 -0.5143 0.8897 32 1 5.6944 0.9379 -0.0013 33 1 4.7893 1.8024 2.1393 34 1 3.8757 3.0453 1.2510 35 1 5.6552 3.0785 1.2501 36 1 4.7873 1.8068 -2.1391 37 1 3.8746 3.0479 -1.2474 38 1 5.6540 3.0810 -1.2480 39 1 4.6078 -3.0296 0.8570 40 1 4.7673 -3.9697 -0.6460 41 1 4.3663 -2.2370 -0.7184 42 1 3.9307 -5.5488 -1.4845 43 1 2.4446 -6.5261 -1.5541 44 1 1.8339 -3.9131 -2.4356 45 1 2.1905 -4.1393 -6.9284 46 1 3.0736 -5.0880 1.9453 47 1 4.3104 -6.8487 -0.3362 48 1 4.8438 -6.8298 1.4291 49 1 2.5190 -7.5556 2.1403 50 1 1.9851 -7.5749 0.3749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734300979.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:52 Heat of formation + Delta-G solvation = 11.905875 kcal Electronic energy + Delta-G solvation = -30760.542371 eV Core-core repulsion = 26790.438009 eV Total energy + Delta-G solvation = -3970.104362 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.62484 -41.25561 -39.10446 -36.84168 -36.57242 -36.23229 -35.51742 -33.46000 -33.04971 -30.35200 -28.46033 -28.13280 -27.75665 -26.26532 -24.74803 -23.89294 -23.62694 -23.07217 -22.33246 -20.85525 -20.22173 -19.38638 -18.58756 -18.12376 -17.72447 -17.30533 -16.79807 -16.48101 -16.22506 -16.13195 -15.44221 -15.36887 -15.18009 -14.91230 -14.78954 -14.69332 -14.41415 -14.03496 -13.87801 -13.81528 -13.69862 -13.49967 -13.20747 -13.13282 -13.07998 -12.88676 -12.62289 -12.53999 -12.36727 -12.26512 -12.16560 -12.09866 -12.01466 -11.91306 -11.68163 -11.41004 -11.11661 -11.05732 -10.84020 -10.04191 -9.59771 -9.37395 -8.12103 -5.42859 -0.08187 0.87218 1.20894 1.23520 1.31504 1.33762 1.78920 2.10205 2.35234 2.67510 2.90583 3.19698 3.35085 3.45648 3.54080 3.82982 3.87115 3.96544 4.02477 4.05275 4.08128 4.13051 4.17525 4.25221 4.34146 4.41518 4.45369 4.56481 4.71021 4.73016 4.75651 4.78435 4.80181 4.83033 4.87682 4.87998 4.95901 5.02039 5.03336 5.06299 5.19010 5.23902 5.27167 5.30920 5.31679 5.54170 5.67778 6.12610 6.18666 6.40394 6.94244 6.97488 7.74468 7.92621 9.09502 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008792 B = 0.004903 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3184.042842 B = 5709.389570 C = 7237.814820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.036 3.964 3 O -0.190 6.190 4 C 0.199 3.801 5 C 0.003 3.997 6 C -0.142 4.142 7 C -0.149 4.149 8 N -0.468 5.468 9 C -0.102 4.102 10 C 0.588 3.412 11 O -0.566 6.566 12 N -0.581 5.581 13 C 0.087 3.913 14 C 0.164 3.836 15 H 0.082 0.918 16 C 0.147 3.853 17 N -0.757 5.757 18 C -0.225 4.225 19 H 0.069 0.931 20 C -0.049 4.049 21 N -0.974 5.974 22 Si 0.934 3.066 23 H -0.285 1.285 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.164 4.164 27 C -0.172 4.172 28 C -0.163 4.163 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.044 0.956 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.041 0.959 44 H 0.358 0.642 45 H 0.259 0.741 46 H 0.113 0.887 47 H 0.093 0.907 48 H 0.115 0.885 49 H 0.117 0.883 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.088 13.379 20.920 25.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.021 4.021 3 O -0.077 6.077 4 C -0.010 4.010 5 C -0.017 4.017 6 C -0.200 4.200 7 C -0.207 4.207 8 N -0.196 5.196 9 C -0.220 4.220 10 C 0.376 3.624 11 O -0.446 6.446 12 N -0.311 5.311 13 C -0.055 4.055 14 C 0.061 3.939 15 H 0.100 0.900 16 C 0.021 3.979 17 N -0.401 5.401 18 C -0.356 4.356 19 H 0.087 0.913 20 C -0.241 4.241 21 N -0.625 5.625 22 Si 0.763 3.237 23 H -0.212 1.212 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.184 4.184 27 C -0.209 4.209 28 C -0.200 4.200 29 H 0.129 0.871 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.142 0.858 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.190 0.810 45 H 0.068 0.932 46 H 0.131 0.869 47 H 0.111 0.889 48 H 0.133 0.867 49 H 0.135 0.865 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.134 12.703 20.797 24.904 hybrid contribution -1.327 0.949 -0.634 1.751 sum 3.807 13.652 20.163 24.646 Atomic orbital electron populations 1.20538 0.80989 1.05630 1.05054 1.24120 0.96144 0.83151 0.98677 1.84299 1.18181 1.35571 1.69677 1.27313 0.84759 0.90469 0.98444 1.20101 0.88178 0.94275 0.99100 1.21874 1.04304 0.99222 0.94597 1.21920 1.04429 0.99376 0.94992 1.70924 1.20655 1.09429 1.18640 1.21434 0.90108 0.95203 1.15291 1.17116 0.85150 0.83594 0.76511 1.90744 1.17253 1.83635 1.52987 1.47589 1.08081 1.05424 1.69966 1.22076 0.78426 1.02466 1.02515 1.20790 0.99677 0.79463 0.93957 0.89963 1.21303 0.97723 0.93809 0.85091 1.42730 1.64551 1.30502 1.02364 1.19069 1.26091 1.07650 0.82826 0.91283 1.25205 1.02396 1.01541 0.94987 1.69818 1.52479 1.42059 0.98168 0.85716 0.79469 0.81403 0.77125 1.21177 1.21064 1.19889 1.22346 1.05804 0.91907 0.98333 1.23224 0.92877 1.01651 1.03107 1.23069 0.98813 0.94413 1.03749 0.87133 0.89818 0.87691 0.85768 0.92343 0.92050 0.88160 0.93670 0.91991 0.87883 0.91253 0.91314 0.89581 0.93638 0.94103 0.80978 0.93204 0.86915 0.88883 0.86672 0.86472 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.59 9.14 71.24 0.65 -0.94 16 2 C 0.04 1.08 7.44 25.19 0.19 1.27 16 3 O -0.19 -5.03 10.73 0.48 0.01 -5.03 16 4 C 0.20 5.05 6.81 88.39 0.60 5.65 16 5 C 0.00 0.04 3.39 -11.54 -0.04 0.00 16 6 C -0.14 -1.56 9.18 71.98 0.66 -0.89 16 7 C -0.15 -2.14 9.18 71.98 0.66 -1.48 16 8 N -0.47 -14.45 7.85 -293.04 -2.30 -16.75 16 9 C -0.10 -3.53 6.67 40.41 0.27 -3.26 16 10 C 0.59 22.71 7.37 86.66 0.64 23.35 16 11 O -0.57 -23.83 14.95 -4.09 -0.06 -23.89 16 12 N -0.58 -20.73 2.24 -826.47 -1.85 -22.59 16 13 C 0.09 2.73 8.92 127.77 1.14 3.87 16 14 C 0.16 5.74 2.58 44.99 0.12 5.85 16 15 H 0.08 3.25 6.90 -2.39 -0.02 3.23 16 16 C 0.15 5.92 4.16 86.38 0.36 6.28 16 17 N -0.76 -38.65 5.24 -343.43 -1.80 -40.45 16 18 C -0.23 -13.43 10.47 84.03 0.88 -12.55 16 19 H 0.07 4.36 8.06 -2.91 -0.02 4.34 16 20 C -0.05 -3.03 5.50 84.86 0.47 -2.57 16 21 N -0.97 -63.92 13.97 21.65 0.30 -63.62 16 22 Si 0.93 49.92 27.74 68.60 1.90 51.83 16 23 H -0.29 -15.04 7.11 99.48 0.71 -14.33 16 24 H -0.28 -14.89 7.11 99.48 0.71 -14.19 16 25 H -0.27 -14.44 6.52 99.48 0.65 -13.79 16 26 C -0.16 -4.29 5.48 -10.79 -0.06 -4.35 16 27 C -0.17 -3.87 9.59 30.62 0.29 -3.57 16 28 C -0.16 -3.63 9.94 30.62 0.30 -3.32 16 29 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.08 2.30 8.13 -2.39 -0.02 2.28 16 31 H 0.10 2.42 8.01 -2.39 -0.02 2.40 16 32 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.10 0.59 8.14 -2.39 -0.02 0.58 16 36 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.07 2.14 6.54 -2.39 -0.02 2.12 16 41 H 0.09 2.95 5.33 -2.39 -0.01 2.94 16 42 H 0.05 1.78 5.33 -2.39 -0.01 1.77 16 43 H 0.04 1.64 7.44 -2.39 -0.02 1.62 16 44 H 0.36 18.87 4.93 -92.71 -0.46 18.41 16 45 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 46 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 47 H 0.09 2.40 5.80 -2.38 -0.01 2.39 16 48 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.09 2.18 7.65 -2.39 -0.02 2.16 16 Total: -1.00 -77.40 399.39 3.76 -73.64 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 0.43 Total: 33.53 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 7.13 Total: 13.33 kcal Atomic # 7 Polarization: -137.75 SS G_CDS: -5.65 Total: -143.40 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.06 Total: -28.92 kcal Atomic # 14 Polarization: 49.92 SS G_CDS: 1.90 Total: 51.83 kcal Total: -77.40 3.76 -73.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734300979.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.542 kcal (2) G-P(sol) polarization free energy of solvation -77.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds