Wall clock time and date at job start Tue Mar 31 2020 18:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 110.38872 * 2 1 4 4 C 1.54385 * 110.34064 * 122.23280 * 2 1 3 5 5 N 1.48146 * 104.61652 * 95.00619 * 4 2 1 6 6 C 1.34781 * 127.83473 * 219.58513 * 5 4 2 7 7 O 1.21280 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99875 * 179.97438 * 6 5 4 9 9 H 1.09004 * 115.56211 * 34.30838 * 8 6 5 10 10 C 1.53004 * 117.49613 * 248.62041 * 8 6 5 11 11 C 1.52992 * 117.49778 * 180.02562 * 8 6 5 12 12 C 1.52993 * 138.58906 * 336.59047 * 11 8 6 13 13 C 1.53002 * 60.03097 * 229.10108 * 12 11 8 14 14 C 1.48140 * 104.32558 * 39.84039 * 5 4 2 15 15 C 1.54287 * 110.33925 * 237.77140 * 2 1 3 16 16 H 1.09000 * 110.34564 * 359.97438 * 15 2 1 17 17 N 1.46898 * 110.34430 * 122.15718 * 15 2 1 18 18 C 1.46896 * 111.00226 * 204.99811 * 17 15 2 19 19 C 1.50699 * 109.47405 * 179.97438 * 18 17 15 20 20 O 1.21289 * 119.99672 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99943 * 179.97438 * 19 18 17 22 22 C 1.37100 * 119.99694 * 179.97438 * 21 19 18 23 23 H 1.07995 * 120.00149 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99596 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00375 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99557 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47344 * 90.00185 * 26 24 22 28 28 H 1.48507 * 109.47158 * 209.99717 * 26 24 22 29 29 H 1.48490 * 109.47579 * 329.99749 * 26 24 22 30 30 H 1.09000 * 109.47608 * 299.22157 * 1 2 3 31 31 H 1.09003 * 109.47047 * 59.22419 * 1 2 3 32 32 H 1.09002 * 109.47619 * 179.22086 * 1 2 3 33 33 H 1.08994 * 109.46796 * 180.77901 * 3 2 1 34 34 H 1.09001 * 109.46895 * 300.77687 * 3 2 1 35 35 H 1.08999 * 109.46864 * 60.77544 * 3 2 1 36 36 H 1.08995 * 110.40858 * 336.21912 * 4 2 1 37 37 H 1.09000 * 110.40328 * 213.78508 * 4 2 1 38 38 H 1.09000 * 117.49881 * 145.02346 * 10 8 6 39 39 H 1.08998 * 117.51886 * 359.97438 * 10 8 6 40 40 H 1.09002 * 117.49972 * 336.60209 * 12 11 8 41 41 H 1.09002 * 117.49720 * 121.60095 * 12 11 8 42 42 H 1.09000 * 117.49996 * 107.50719 * 13 12 11 43 43 H 1.09007 * 117.49696 * 252.52389 * 13 12 11 44 44 H 1.09008 * 110.40597 * 78.94242 * 14 5 4 45 45 H 1.08995 * 110.41006 * 201.36798 * 14 5 4 46 46 H 1.00900 * 111.00034 * 81.03831 * 17 15 2 47 47 H 1.09001 * 109.47164 * 299.99718 * 18 17 15 48 48 H 1.09006 * 109.46982 * 59.99390 * 18 17 15 49 49 H 0.97003 * 120.00324 * 359.97438 * 21 19 18 50 50 H 0.96996 * 120.00151 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 6 2.0666 -0.7721 1.2245 5 7 2.3139 -2.1438 0.7226 6 6 2.0773 -3.3106 1.3545 7 8 1.6061 -3.3102 2.4720 8 6 2.3982 -4.6155 0.6724 9 1 3.2734 -4.6039 0.0228 10 6 1.2233 -5.5041 0.2590 11 6 2.1061 -5.9052 1.4418 12 6 1.9421 -6.3641 2.8920 13 6 2.8610 -7.1382 1.9447 14 6 2.8860 -1.9420 -0.6289 15 6 2.0663 -0.7715 -1.2238 16 1 1.2397 -1.1508 -1.8246 17 7 2.9312 0.0954 -2.0352 18 6 2.9705 -0.3588 -3.4316 19 6 3.8649 0.5530 -4.2314 20 8 4.4150 1.4894 -3.6914 21 7 4.0535 0.3280 -5.5468 22 6 4.8667 1.1578 -6.2745 23 1 5.3559 1.9921 -5.7939 24 6 5.0607 0.9261 -7.6308 25 7 4.4651 -0.0887 -8.2158 26 14 6.1682 2.0572 -8.6225 27 1 7.5603 1.5413 -8.5888 28 1 5.6929 2.1075 -10.0285 29 1 6.1320 3.4221 -8.0387 30 1 -0.3634 0.5017 0.8969 31 1 -0.3633 0.5258 -0.8830 32 1 -0.3634 -1.0276 -0.0140 33 1 3.1527 1.4167 -0.0140 34 1 1.6967 1.9579 -0.8830 35 1 1.7193 1.9495 0.8969 36 1 1.3222 -0.7870 2.0205 37 1 2.9949 -0.3242 1.5792 38 1 1.3256 -6.0772 -0.6626 39 1 0.2181 -5.1454 0.4805 40 1 2.4128 -5.7596 3.6674 41 1 0.9964 -6.8303 3.1685 42 1 3.9361 -7.0432 2.0969 43 1 2.5195 -8.1135 1.5976 44 1 3.9404 -1.6741 -0.5592 45 1 2.7607 -2.8407 -1.2328 46 1 3.8603 0.1462 -1.6451 47 1 3.3591 -1.3763 -3.4719 48 1 1.9638 -0.3375 -3.8491 49 1 3.6138 -0.4211 -5.9787 50 1 4.6002 -0.2502 -9.1627 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734500013.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:23 Heat of formation + Delta-G solvation = -1.677715 kcal Electronic energy + Delta-G solvation = -29157.330071 eV Core-core repulsion = 25186.636681 eV Total energy + Delta-G solvation = -3970.693391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.64919 -39.21800 -38.14397 -37.33026 -34.64696 -33.90967 -33.59117 -32.77632 -31.25601 -28.90576 -27.41956 -27.09719 -26.01995 -24.16320 -23.60439 -22.67764 -22.42284 -20.25698 -19.50309 -19.03539 -18.59187 -17.93044 -17.33505 -16.27013 -16.15414 -15.70667 -15.35428 -15.28390 -15.05314 -14.56435 -14.43266 -14.21363 -13.93446 -13.87446 -13.77355 -13.19475 -13.16628 -12.80919 -12.46929 -12.31422 -12.15044 -12.00586 -11.84450 -11.75821 -11.67391 -11.57697 -11.53528 -11.09300 -10.95141 -10.71999 -10.60463 -10.53182 -10.42375 -10.42012 -10.29659 -10.24995 -9.90068 -9.54337 -8.94148 -8.50261 -8.10964 -7.99628 -6.45229 -3.86074 2.27236 2.61601 3.15261 3.24437 3.30193 3.40542 3.45130 3.86389 3.94221 4.02437 4.20348 4.25943 4.41680 4.50372 4.56705 4.76445 4.78962 4.99515 5.05389 5.09514 5.12330 5.21571 5.22594 5.24333 5.32756 5.35059 5.38176 5.45320 5.53377 5.59596 5.62209 5.63869 5.65943 5.72722 5.74340 5.83949 5.88135 5.91629 5.98411 6.04609 6.20693 6.23137 6.29867 6.62897 7.13786 7.34754 7.52011 7.54681 7.99521 8.02601 8.57222 9.14442 9.50493 10.01529 10.72437 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014469 B = 0.002373 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.752461 B =11796.478859 C =13176.274663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.069 4.069 3 C -0.116 4.116 4 C 0.112 3.888 5 N -0.616 5.616 6 C 0.563 3.437 7 O -0.538 6.538 8 C -0.139 4.139 9 H 0.123 0.877 10 C -0.098 4.098 11 C -0.202 4.202 12 C -0.113 4.113 13 C -0.129 4.129 14 C 0.069 3.931 15 C 0.083 3.917 16 H 0.091 0.909 17 N -0.650 5.650 18 C 0.048 3.952 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.352 0.648 47 H 0.044 0.956 48 H 0.087 0.913 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 -11.479 16.706 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.070 4.070 3 C -0.174 4.174 4 C -0.011 4.011 5 N -0.350 5.350 6 C 0.352 3.648 7 O -0.414 6.414 8 C -0.160 4.160 9 H 0.141 0.859 10 C -0.136 4.136 11 C -0.202 4.202 12 C -0.150 4.150 13 C -0.166 4.166 14 C -0.056 4.056 15 C -0.029 4.029 16 H 0.109 0.891 17 N -0.282 5.282 18 C -0.085 4.085 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.173 0.827 47 H 0.062 0.938 48 H 0.105 0.895 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.655 -10.523 17.391 21.720 hybrid contribution 0.978 -0.750 -1.034 1.609 sum -6.677 -11.272 16.357 20.957 Atomic orbital electron populations 1.21823 0.93692 1.01439 1.02152 1.21523 0.95930 0.96567 0.93030 1.21521 1.01291 0.93172 1.01412 1.22565 1.01019 0.80481 0.97014 1.48802 1.62917 1.05514 1.17778 1.19280 0.77389 0.82997 0.85118 1.90690 1.44901 1.86840 1.19012 1.21926 1.02394 0.88429 1.03266 0.85917 1.22658 0.94545 0.99293 0.97061 1.21171 1.05967 0.96051 0.97054 1.22597 1.00903 1.00897 0.90592 1.22787 0.98228 0.93705 1.01897 1.23470 0.98119 1.00633 0.83392 1.22702 0.96105 0.89937 0.94124 0.89051 1.60289 1.17151 1.49921 1.00795 1.21758 1.00788 0.96468 0.89469 1.19777 0.86363 0.88071 0.83213 1.90529 1.52873 1.32839 1.70446 1.41868 1.42905 1.28252 1.06972 1.19695 1.23019 1.09358 0.90793 0.87913 1.25262 0.98261 0.97365 0.97042 1.69606 1.43511 1.28861 1.12324 0.85863 0.79650 0.80300 0.78522 1.20426 1.20919 1.19390 0.92524 0.91891 0.93074 0.92193 0.90774 0.93909 0.89981 0.90971 0.87416 0.88056 0.88249 0.88518 0.88503 0.88243 0.90680 0.90043 0.82735 0.93842 0.89498 0.77480 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 8.24 37.16 0.31 -1.02 16 2 C -0.07 -0.72 1.03 -153.11 -0.16 -0.88 16 3 C -0.12 -1.32 7.44 37.16 0.28 -1.04 16 4 C 0.11 1.21 6.14 -2.41 -0.01 1.20 16 5 N -0.62 -6.90 3.31 -169.06 -0.56 -7.46 16 6 C 0.56 7.06 7.70 -10.98 -0.08 6.97 16 7 O -0.54 -8.42 16.51 5.56 0.09 -8.33 16 8 C -0.14 -1.40 5.31 -91.77 -0.49 -1.88 16 9 H 0.12 1.07 7.64 -51.93 -0.40 0.67 16 10 C -0.10 -0.85 10.23 -26.76 -0.27 -1.12 16 11 C -0.20 -1.95 5.05 -154.51 -0.78 -2.73 16 12 C -0.11 -1.04 10.16 -26.73 -0.27 -1.31 16 13 C -0.13 -0.99 10.53 -26.69 -0.28 -1.27 16 14 C 0.07 0.69 6.50 -2.20 -0.01 0.68 16 15 C 0.08 0.91 3.03 -66.10 -0.20 0.71 16 16 H 0.09 0.99 7.39 -51.93 -0.38 0.61 16 17 N -0.65 -9.07 4.20 -106.28 -0.45 -9.51 16 18 C 0.05 0.75 6.02 -4.98 -0.03 0.72 16 19 C 0.44 9.78 7.82 -10.99 -0.09 9.69 16 20 O -0.58 -15.03 15.78 5.55 0.09 -14.94 16 21 N -0.56 -13.71 5.29 -10.96 -0.06 -13.77 16 22 C -0.30 -8.12 9.68 -14.93 -0.14 -8.27 16 23 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.02 13.05 55.50 0.72 -23.29 16 26 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.72 7.40 -51.93 -0.38 0.34 16 34 H 0.07 0.98 7.96 -51.93 -0.41 0.57 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.95 7.60 -51.93 -0.39 0.55 16 37 H 0.07 0.76 7.86 -51.93 -0.41 0.35 16 38 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 0.62 8.14 -51.92 -0.42 0.19 16 44 H 0.08 0.76 7.57 -51.92 -0.39 0.36 16 45 H 0.08 0.72 7.20 -51.93 -0.37 0.34 16 46 H 0.35 5.13 7.34 -39.29 -0.29 4.85 16 47 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 49 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16 50 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 408.35 15.07 6.15 6.15 Total: -1.00 -31.80 408.35 -9.71 -41.51 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -8.34 Total: 13.05 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -2.34 Total: 0.94 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.34 Total: -54.04 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: 0.18 Total: -23.27 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.80 -9.71 -41.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734500013.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.828 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds