Wall clock time and date at job start Tue Mar 31 2020 18:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30007 * 127.33646 * 2 1 4 4 O 1.20658 * 112.30142 * 179.97438 * 3 2 1 5 5 C 1.33493 * 113.15689 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.83254 * 180.02562 * 5 4 3 7 7 C 1.37359 * 106.34054 * 359.74858 * 5 4 3 8 8 C 1.47400 * 128.56683 * 180.23562 * 7 5 4 9 9 O 1.21608 * 119.99684 * 270.16243 * 8 7 5 10 10 N 1.34773 * 120.00259 * 90.15926 * 8 7 5 11 11 C 1.46500 * 120.00406 * 175.25013 * 10 8 7 12 12 C 1.52997 * 109.46787 * 59.53270 * 11 10 8 13 13 N 1.46513 * 109.46982 * 174.56398 * 12 11 10 14 14 C 1.36936 * 119.99891 * 185.21500 * 13 12 11 15 15 H 1.08001 * 120.00161 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99934 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99997 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99759 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47558 * 89.99999 * 18 16 14 20 20 H 1.48507 * 109.46901 * 209.99740 * 18 16 14 21 21 H 1.48503 * 109.47394 * 329.99524 * 18 16 14 22 22 C 1.53005 * 109.47004 * 299.53499 * 11 10 8 23 23 C 1.52990 * 109.47320 * 299.99986 * 22 11 10 24 24 C 1.53005 * 109.47178 * 299.99797 * 23 22 11 25 25 C 1.53005 * 109.46829 * 59.99902 * 24 23 22 26 26 C 1.52992 * 109.47327 * 179.53657 * 11 10 8 27 27 H 1.09008 * 109.47067 * 179.97438 * 26 11 10 28 28 C 1.52999 * 109.47250 * 299.99794 * 26 11 10 29 29 H 1.08999 * 109.47248 * 90.02232 * 1 2 3 30 30 H 1.09004 * 109.46635 * 330.03085 * 1 2 3 31 31 H 1.08999 * 109.47285 * 210.02571 * 1 2 3 32 32 H 1.09001 * 109.47105 * 359.97438 * 6 5 4 33 33 H 1.09005 * 109.47236 * 119.97735 * 6 5 4 34 34 H 1.08993 * 109.47235 * 239.97940 * 6 5 4 35 35 H 0.97003 * 119.99698 * 355.25423 * 10 8 7 36 36 H 1.08995 * 109.47594 * 294.56211 * 12 11 10 37 37 H 1.08997 * 109.47219 * 54.56708 * 12 11 10 38 38 H 0.96995 * 119.99273 * 5.20785 * 13 12 11 39 39 H 0.97005 * 119.99546 * 180.02562 * 17 16 14 40 40 H 1.09007 * 109.46745 * 59.99977 * 22 11 10 41 41 H 1.09000 * 109.47046 * 179.97438 * 22 11 10 42 42 H 1.09003 * 109.47428 * 179.97438 * 23 22 11 43 43 H 1.09000 * 109.47471 * 59.99758 * 23 22 11 44 44 H 1.09000 * 109.46888 * 300.00319 * 24 23 22 45 45 H 1.08997 * 109.47089 * 179.97438 * 24 23 22 46 46 H 1.08993 * 109.46915 * 180.02562 * 25 24 23 47 47 H 1.09000 * 109.47046 * 60.00513 * 25 24 23 48 48 H 1.09000 * 109.46830 * 60.00391 * 28 26 11 49 49 H 1.09001 * 109.47464 * 179.97438 * 28 26 11 50 50 H 1.09001 * 109.47370 * 300.00344 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6494 -0.6009 0.0015 6 6 4.9711 -1.3248 0.0028 7 6 2.3991 -1.1697 0.0074 8 6 2.0400 -2.5992 0.0155 9 8 1.8922 -3.1949 -1.0344 10 7 1.8754 -3.2461 1.1863 11 6 1.4174 -4.6376 1.1964 12 6 2.4091 -5.5064 0.4201 13 7 2.0221 -6.9145 0.5391 14 6 2.8245 -7.8919 0.0137 15 1 3.7424 -7.6248 -0.4888 16 6 2.4580 -9.2259 0.1269 17 7 3.2290 -10.1653 -0.3786 18 14 0.8700 -9.6878 0.9953 19 1 -0.2406 -9.7239 0.0103 20 1 1.0196 -11.0260 1.6218 21 1 0.5686 -8.6810 2.0445 22 6 0.0388 -4.7256 0.5387 23 6 -0.9529 -3.8567 1.3148 24 6 -1.0443 -4.3532 2.7592 25 6 0.3344 -4.2653 3.4168 26 6 1.3261 -5.1341 2.6406 27 1 0.9849 -6.1693 2.6481 28 6 2.7047 -5.0462 3.2983 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 0.8903 0.5134 31 1 -0.3634 -0.8897 0.5142 32 1 5.7835 -0.5980 0.0025 33 1 5.0425 -1.9492 0.8935 34 1 5.0434 -1.9508 -0.8864 35 1 2.0601 -2.7902 2.0224 36 1 2.4026 -5.2154 -0.6302 37 1 3.4101 -5.3690 0.8290 38 1 1.1976 -7.1543 0.9902 39 1 2.9727 -11.0976 -0.2998 40 1 0.1039 -4.3719 -0.4903 41 1 -0.3018 -5.7610 0.5458 42 1 -1.9350 -3.9190 0.8460 43 1 -0.6122 -2.8214 1.3074 44 1 -1.3850 -5.3886 2.7666 45 1 -1.7505 -3.7339 3.3122 46 1 0.2694 -4.6193 4.4456 47 1 0.6751 -3.2299 3.4094 48 1 3.0454 -4.0108 3.2909 49 1 2.6395 -5.3994 4.3275 50 1 3.4112 -5.6651 2.7454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753530121.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:19 Heat of formation + Delta-G solvation = 24.740793 kcal Electronic energy + Delta-G solvation = -31491.482346 eV Core-core repulsion = 27521.934548 eV Total energy + Delta-G solvation = -3969.547798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.03194 -40.76304 -38.16836 -34.84667 -34.65029 -33.86785 -33.50975 -32.43465 -31.49646 -29.66186 -28.97912 -28.12936 -26.70457 -25.22832 -24.61372 -22.50430 -21.87676 -21.08093 -20.72144 -20.15013 -18.69320 -18.19424 -17.90176 -17.69134 -16.53601 -15.59770 -15.02218 -14.93448 -14.71275 -14.37116 -14.13172 -14.07279 -13.90963 -13.72900 -13.52175 -13.41033 -13.38787 -13.26362 -12.99831 -12.76437 -12.62881 -12.53769 -11.95005 -11.85751 -11.73390 -11.56358 -11.35615 -11.27910 -11.12126 -10.89722 -10.73556 -10.54185 -10.26261 -10.22697 -10.09881 -10.01407 -9.62655 -9.54194 -9.45635 -8.84913 -8.79509 -7.16343 -5.73508 -3.07895 1.13575 1.73073 2.43767 2.67321 3.24592 3.35038 3.39462 3.45402 3.92332 4.06025 4.58933 4.60554 4.72417 4.74993 4.78712 4.81773 5.00184 5.11167 5.16271 5.19556 5.20945 5.23717 5.34690 5.41632 5.45868 5.48185 5.54242 5.59498 5.60851 5.63686 5.69833 5.71178 5.79813 5.86148 5.93974 5.99969 6.13014 6.17938 6.25104 6.30715 6.35160 6.44338 6.54322 6.68923 6.75209 6.97208 7.56375 8.02720 8.03462 8.23903 8.45262 9.24436 9.96535 10.16465 11.45297 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.004016 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.886555 B = 6970.162732 C = 7828.920024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.055 3.945 3 N -0.359 5.359 4 O 0.093 5.907 5 C 0.019 3.981 6 C -0.082 4.082 7 C -0.250 4.250 8 C 0.597 3.403 9 O -0.507 6.507 10 N -0.703 5.703 11 C 0.178 3.822 12 C 0.148 3.852 13 N -0.750 5.750 14 C -0.236 4.236 15 H 0.089 0.911 16 C 0.004 3.996 17 N -0.935 5.935 18 Si 0.880 3.120 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.278 1.278 22 C -0.129 4.129 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.114 4.114 26 C -0.092 4.092 27 H 0.092 0.908 28 C -0.147 4.147 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.397 0.603 36 H 0.052 0.948 37 H 0.031 0.969 38 H 0.359 0.641 39 H 0.258 0.742 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.045 0.955 49 H 0.053 0.947 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.143 21.203 7.927 23.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 N -0.067 5.067 4 O 0.032 5.968 5 C -0.044 4.044 6 C -0.139 4.139 7 C -0.257 4.257 8 C 0.380 3.620 9 O -0.382 6.382 10 N -0.355 5.355 11 C 0.093 3.907 12 C 0.021 3.979 13 N -0.397 5.397 14 C -0.366 4.366 15 H 0.107 0.893 16 C -0.191 4.191 17 N -0.584 5.584 18 Si 0.711 3.289 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.204 1.204 22 C -0.167 4.167 23 C -0.153 4.153 24 C -0.159 4.159 25 C -0.152 4.152 26 C -0.111 4.111 27 H 0.110 0.890 28 C -0.204 4.204 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.233 0.767 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.193 0.807 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.064 0.936 49 H 0.072 0.928 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.256 21.965 7.050 23.458 hybrid contribution -1.128 -1.038 0.982 1.821 sum -5.384 20.927 8.033 23.053 Atomic orbital electron populations 1.20245 0.85291 1.03992 1.04010 1.24719 0.98489 0.86582 1.00927 1.73596 0.89190 1.23417 1.20459 1.84526 1.21464 1.22724 1.68063 1.24677 0.97557 0.83595 0.98607 1.20519 0.88762 0.99351 1.05265 1.22044 0.92752 0.95596 1.15356 1.16826 0.77236 0.83540 0.84399 1.90856 1.48995 1.66700 1.31613 1.46059 1.67983 1.13732 1.07765 1.20610 0.94621 0.79781 0.95705 1.21070 0.94386 0.83839 0.98625 1.42655 1.25953 1.01130 1.69932 1.19030 1.02989 0.85655 1.28903 0.89287 1.24622 0.98013 0.95557 1.00907 1.69697 1.38276 0.99661 1.50747 0.86625 0.84973 0.77597 0.79755 1.21090 1.21785 1.20430 1.21922 0.93242 1.00951 1.00599 1.21528 0.99116 0.99380 0.95314 1.21562 0.96784 1.01541 0.95964 1.21628 0.95029 0.99507 0.99022 1.21377 0.96073 1.00960 0.92697 0.88999 1.21852 0.96901 1.01144 1.00547 0.89581 0.90063 0.89763 0.89260 0.88483 0.88205 0.76721 0.93053 0.95155 0.80723 0.93145 0.89899 0.90695 0.92237 0.92468 0.91828 0.92351 0.91837 0.92461 0.93614 0.92813 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.49 36.01 0.38 -0.32 16 2 C 0.05 0.64 7.59 -79.77 -0.61 0.04 16 3 N -0.36 -4.45 12.01 34.78 0.42 -4.03 16 4 O 0.09 1.07 11.06 18.65 0.21 1.27 16 5 C 0.02 0.20 7.55 -34.63 -0.26 -0.06 16 6 C -0.08 -0.62 10.33 36.01 0.37 -0.25 16 7 C -0.25 -3.04 6.25 -102.89 -0.64 -3.69 16 8 C 0.60 8.29 7.04 -12.53 -0.09 8.21 16 9 O -0.51 -9.15 13.40 5.27 0.07 -9.08 16 10 N -0.70 -8.57 3.74 -48.68 -0.18 -8.75 16 11 C 0.18 2.63 0.11 -131.82 -0.01 2.61 16 12 C 0.15 2.90 4.45 -4.04 -0.02 2.88 16 13 N -0.75 -17.37 4.80 -59.90 -0.29 -17.66 16 14 C -0.24 -6.63 10.47 -15.06 -0.16 -6.78 16 15 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 16 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 17 N -0.94 -29.38 13.97 55.49 0.78 -28.61 16 18 Si 0.88 21.87 27.74 -169.99 -4.71 17.15 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 21 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 22 C -0.13 -1.95 4.40 -26.73 -0.12 -2.07 16 23 C -0.12 -1.35 5.77 -26.73 -0.15 -1.50 16 24 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 25 C -0.11 -1.20 5.03 -26.73 -0.13 -1.34 16 26 C -0.09 -1.24 1.77 -90.63 -0.16 -1.40 16 27 H 0.09 1.49 6.65 -51.92 -0.35 1.15 16 28 C -0.15 -1.86 8.67 37.16 0.32 -1.54 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.71 7.02 -51.93 -0.36 0.34 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.40 3.94 6.15 -40.82 -0.25 3.68 16 36 H 0.05 1.14 6.17 -51.93 -0.32 0.82 16 37 H 0.03 0.60 6.73 -51.93 -0.35 0.25 16 38 H 0.36 8.07 3.25 -40.82 -0.13 7.93 16 39 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16 40 H 0.08 1.42 6.37 -51.93 -0.33 1.09 16 41 H 0.07 1.25 7.10 -51.93 -0.37 0.89 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.62 6.48 -51.93 -0.34 0.28 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.53 6.85 -51.93 -0.36 0.17 16 48 H 0.04 0.47 6.87 -51.93 -0.36 0.11 16 49 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.07 1.17 6.55 -51.93 -0.34 0.83 16 LS Contribution 382.78 15.07 5.77 5.77 Total: -1.00 -33.53 382.78 -7.15 -40.68 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -7.67 Total: 9.88 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -1.54 Total: -6.63 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 0.72 Total: -59.05 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.28 Total: -7.80 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.15 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.53 -7.15 -40.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753530121.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.422 kcal (2) G-P(sol) polarization free energy of solvation -33.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds