Wall clock time and date at job start Tue Mar 31 2020 18:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30007 * 127.33646 * 2 1 4 4 O 1.20658 * 112.30142 * 179.97438 * 3 2 1 5 5 C 1.33493 * 113.15689 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.83254 * 180.02562 * 5 4 3 7 7 C 1.37359 * 106.34054 * 359.74858 * 5 4 3 8 8 C 1.47400 * 128.56683 * 180.23562 * 7 5 4 9 9 O 1.21608 * 119.99684 * 270.16243 * 8 7 5 10 10 N 1.34773 * 120.00259 * 90.15926 * 8 7 5 11 11 C 1.46500 * 120.00406 * 175.25013 * 10 8 7 12 12 C 1.52997 * 109.46787 * 59.53270 * 11 10 8 13 13 N 1.46513 * 109.46982 * 174.56398 * 12 11 10 14 14 C 1.36936 * 119.99891 * 185.21500 * 13 12 11 15 15 H 1.08001 * 120.00161 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99934 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99997 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99759 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47558 * 89.99999 * 18 16 14 20 20 H 1.48507 * 109.46901 * 209.99740 * 18 16 14 21 21 H 1.48503 * 109.47394 * 329.99524 * 18 16 14 22 22 C 1.53005 * 109.47004 * 299.53499 * 11 10 8 23 23 C 1.52990 * 109.47320 * 299.99986 * 22 11 10 24 24 C 1.53005 * 109.47178 * 299.99797 * 23 22 11 25 25 C 1.53005 * 109.46829 * 59.99902 * 24 23 22 26 26 C 1.52992 * 109.47327 * 179.53657 * 11 10 8 27 27 H 1.09008 * 109.47067 * 179.97438 * 26 11 10 28 28 C 1.52999 * 109.47250 * 299.99794 * 26 11 10 29 29 H 1.08999 * 109.47248 * 90.02232 * 1 2 3 30 30 H 1.09004 * 109.46635 * 330.03085 * 1 2 3 31 31 H 1.08999 * 109.47285 * 210.02571 * 1 2 3 32 32 H 1.09001 * 109.47105 * 359.97438 * 6 5 4 33 33 H 1.09005 * 109.47236 * 119.97735 * 6 5 4 34 34 H 1.08993 * 109.47235 * 239.97940 * 6 5 4 35 35 H 0.97003 * 119.99698 * 355.25423 * 10 8 7 36 36 H 1.08995 * 109.47594 * 294.56211 * 12 11 10 37 37 H 1.08997 * 109.47219 * 54.56708 * 12 11 10 38 38 H 0.96995 * 119.99273 * 5.20785 * 13 12 11 39 39 H 0.97005 * 119.99546 * 180.02562 * 17 16 14 40 40 H 1.09007 * 109.46745 * 59.99977 * 22 11 10 41 41 H 1.09000 * 109.47046 * 179.97438 * 22 11 10 42 42 H 1.09003 * 109.47428 * 179.97438 * 23 22 11 43 43 H 1.09000 * 109.47471 * 59.99758 * 23 22 11 44 44 H 1.09000 * 109.46888 * 300.00319 * 24 23 22 45 45 H 1.08997 * 109.47089 * 179.97438 * 24 23 22 46 46 H 1.08993 * 109.46915 * 180.02562 * 25 24 23 47 47 H 1.09000 * 109.47046 * 60.00513 * 25 24 23 48 48 H 1.09000 * 109.46830 * 60.00391 * 28 26 11 49 49 H 1.09001 * 109.47464 * 179.97438 * 28 26 11 50 50 H 1.09001 * 109.47370 * 300.00344 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6494 -0.6009 0.0015 6 6 4.9711 -1.3248 0.0028 7 6 2.3991 -1.1697 0.0074 8 6 2.0400 -2.5992 0.0155 9 8 1.8922 -3.1949 -1.0344 10 7 1.8754 -3.2461 1.1863 11 6 1.4174 -4.6376 1.1964 12 6 2.4091 -5.5064 0.4201 13 7 2.0221 -6.9145 0.5391 14 6 2.8245 -7.8919 0.0137 15 1 3.7424 -7.6248 -0.4888 16 6 2.4580 -9.2259 0.1269 17 7 3.2290 -10.1653 -0.3786 18 14 0.8700 -9.6878 0.9953 19 1 -0.2406 -9.7239 0.0103 20 1 1.0196 -11.0260 1.6218 21 1 0.5686 -8.6810 2.0445 22 6 0.0388 -4.7256 0.5387 23 6 -0.9529 -3.8567 1.3148 24 6 -1.0443 -4.3532 2.7592 25 6 0.3344 -4.2653 3.4168 26 6 1.3261 -5.1341 2.6406 27 1 0.9849 -6.1693 2.6481 28 6 2.7047 -5.0462 3.2983 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 0.8903 0.5134 31 1 -0.3634 -0.8897 0.5142 32 1 5.7835 -0.5980 0.0025 33 1 5.0425 -1.9492 0.8935 34 1 5.0434 -1.9508 -0.8864 35 1 2.0601 -2.7902 2.0224 36 1 2.4026 -5.2154 -0.6302 37 1 3.4101 -5.3690 0.8290 38 1 1.1976 -7.1543 0.9902 39 1 2.9727 -11.0976 -0.2998 40 1 0.1039 -4.3719 -0.4903 41 1 -0.3018 -5.7610 0.5458 42 1 -1.9350 -3.9190 0.8460 43 1 -0.6122 -2.8214 1.3074 44 1 -1.3850 -5.3886 2.7666 45 1 -1.7505 -3.7339 3.3122 46 1 0.2694 -4.6193 4.4456 47 1 0.6751 -3.2299 3.4094 48 1 3.0454 -4.0108 3.2909 49 1 2.6395 -5.3994 4.3275 50 1 3.4112 -5.6651 2.7454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753530121.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:17 Heat of formation + Delta-G solvation = 3.121998 kcal Electronic energy + Delta-G solvation = -31492.419807 eV Core-core repulsion = 27521.934548 eV Total energy + Delta-G solvation = -3970.485260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.91728 -41.94230 -39.33141 -36.50259 -35.62211 -34.93694 -34.51512 -33.59947 -33.34798 -31.06499 -29.75423 -28.91861 -27.97411 -26.63383 -25.61806 -24.26119 -23.10353 -22.08650 -21.81209 -21.04204 -19.89217 -19.77370 -19.18116 -18.79406 -17.47600 -16.82490 -16.41986 -16.36360 -15.96617 -15.63876 -15.31133 -15.22957 -15.12688 -14.95248 -14.63829 -14.41181 -14.34284 -14.19396 -14.06264 -13.80386 -13.53197 -13.41065 -13.38636 -13.26440 -13.02071 -12.85030 -12.77165 -12.55942 -12.35236 -12.13653 -12.10610 -11.87176 -11.77345 -11.49736 -11.27361 -11.20095 -10.96907 -10.93194 -10.65600 -10.40851 -10.05464 -9.25360 -8.02017 -5.34658 0.26634 0.84337 1.33550 1.34260 1.39560 1.45979 1.75203 2.22716 2.47664 3.08576 3.24493 3.29212 3.50194 3.72202 3.74548 3.77750 3.86741 3.94704 4.13341 4.16711 4.24070 4.40822 4.46519 4.47736 4.51590 4.54580 4.56892 4.60549 4.63995 4.68627 4.78169 4.86980 4.91338 4.97134 5.03252 5.06766 5.12088 5.13531 5.18026 5.20949 5.30372 5.33274 5.38736 5.48559 5.52132 5.61733 5.75605 6.21111 6.49857 7.07031 7.16251 7.16837 7.82573 8.04018 9.20019 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.004016 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.886555 B = 6970.162732 C = 7828.920024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.057 3.943 3 N -0.376 5.376 4 O 0.091 5.909 5 C 0.034 3.966 6 C -0.085 4.085 7 C -0.275 4.275 8 C 0.605 3.395 9 O -0.554 6.554 10 N -0.684 5.684 11 C 0.191 3.809 12 C 0.151 3.849 13 N -0.745 5.745 14 C -0.229 4.229 15 H 0.050 0.950 16 C -0.061 4.061 17 N -0.985 5.985 18 Si 0.948 3.052 19 H -0.282 1.282 20 H -0.293 1.293 21 H -0.245 1.245 22 C -0.129 4.129 23 C -0.109 4.109 24 C -0.120 4.120 25 C -0.107 4.107 26 C -0.091 4.091 27 H 0.065 0.935 28 C -0.145 4.145 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.414 0.586 36 H 0.021 0.979 37 H 0.027 0.973 38 H 0.366 0.634 39 H 0.258 0.742 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.940 23.583 10.876 26.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 N -0.085 5.085 4 O 0.032 5.968 5 C -0.029 4.029 6 C -0.141 4.141 7 C -0.282 4.282 8 C 0.390 3.610 9 O -0.431 6.431 10 N -0.337 5.337 11 C 0.105 3.895 12 C 0.023 3.977 13 N -0.392 5.392 14 C -0.360 4.360 15 H 0.068 0.932 16 C -0.252 4.252 17 N -0.635 5.635 18 Si 0.775 3.225 19 H -0.208 1.208 20 H -0.219 1.219 21 H -0.169 1.169 22 C -0.167 4.167 23 C -0.146 4.146 24 C -0.157 4.157 25 C -0.145 4.145 26 C -0.110 4.110 27 H 0.083 0.917 28 C -0.202 4.202 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.252 0.748 36 H 0.039 0.961 37 H 0.045 0.955 38 H 0.201 0.799 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.104 0.896 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.047 24.417 10.049 27.088 hybrid contribution -0.431 -1.736 -0.053 1.789 sum -6.477 22.681 9.996 25.618 Atomic orbital electron populations 1.20383 0.83573 1.05226 1.04493 1.25123 0.99613 0.85967 0.99856 1.73593 0.89513 1.23854 1.21571 1.84517 1.21297 1.22912 1.68084 1.25121 0.98107 0.83317 0.96394 1.20700 0.88271 0.99851 1.05321 1.21881 0.93861 0.94619 1.17836 1.16993 0.76065 0.84076 0.83862 1.90851 1.51024 1.67923 1.33341 1.45810 1.67204 1.12496 1.08237 1.20276 0.92973 0.80108 0.96157 1.21079 0.95924 0.82849 0.97808 1.42535 1.25477 1.01801 1.69370 1.18959 1.02095 0.87004 1.27915 0.93212 1.25437 1.02078 0.95324 1.02348 1.69887 1.40779 1.00006 1.52868 0.85513 0.79948 0.77742 0.79272 1.20814 1.21910 1.16949 1.21870 0.94401 1.00483 0.99979 1.21495 0.98260 0.99147 0.95719 1.21579 0.97487 1.01492 0.95178 1.21614 0.93807 0.99917 0.99146 1.21347 0.97615 1.00169 0.91844 0.91675 1.21825 0.95490 1.02210 1.00696 0.89431 0.88295 0.89003 0.86562 0.87216 0.89132 0.74753 0.96096 0.95529 0.79935 0.93354 0.92511 0.92762 0.91471 0.91110 0.92856 0.89606 0.90117 0.90280 0.90936 0.91234 0.94209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.49 71.24 0.75 -0.49 16 2 C 0.06 1.22 7.59 45.16 0.34 1.56 16 3 N -0.38 -8.69 12.01 -44.79 -0.54 -9.23 16 4 O 0.09 1.93 11.06 76.98 0.85 2.78 16 5 C 0.03 0.68 7.55 25.48 0.19 0.87 16 6 C -0.08 -1.16 10.33 71.24 0.74 -0.42 16 7 C -0.27 -6.34 6.25 -18.74 -0.12 -6.45 16 8 C 0.61 16.51 7.04 86.66 0.61 17.12 16 9 O -0.55 -20.62 13.40 -4.05 -0.05 -20.67 16 10 N -0.68 -15.62 3.74 -426.19 -1.59 -17.21 16 11 C 0.19 5.50 0.11 3.60 0.00 5.50 16 12 C 0.15 6.08 4.45 86.38 0.38 6.47 16 13 N -0.74 -35.43 4.80 -343.44 -1.65 -37.08 16 14 C -0.23 -13.41 10.47 84.03 0.88 -12.53 16 15 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 16 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 17 N -0.98 -64.12 13.97 21.65 0.30 -63.81 16 18 Si 0.95 45.57 27.74 68.60 1.90 47.47 16 19 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 20 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 21 H -0.25 -10.34 6.52 99.48 0.65 -9.69 16 22 C -0.13 -3.83 4.40 30.59 0.13 -3.70 16 23 C -0.11 -2.24 5.77 30.59 0.18 -2.06 16 24 C -0.12 -2.08 5.92 30.60 0.18 -1.90 16 25 C -0.11 -1.80 5.03 30.59 0.15 -1.64 16 26 C -0.09 -2.24 1.77 -10.80 -0.02 -2.26 16 27 H 0.06 1.99 6.65 -2.38 -0.02 1.98 16 28 C -0.14 -3.34 8.67 71.98 0.62 -2.71 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.27 7.02 -2.39 -0.02 1.26 16 32 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.41 6.85 6.15 -92.71 -0.57 6.28 16 36 H 0.02 0.99 6.17 -2.39 -0.01 0.98 16 37 H 0.03 1.10 6.73 -2.39 -0.02 1.08 16 38 H 0.37 16.43 3.25 -92.71 -0.30 16.13 16 39 H 0.26 15.94 8.31 -92.70 -0.77 15.17 16 40 H 0.06 1.99 6.37 -2.38 -0.02 1.97 16 41 H 0.05 1.81 7.10 -2.39 -0.02 1.80 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.07 1.27 6.48 -2.39 -0.02 1.26 16 44 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.08 1.01 6.85 -2.39 -0.02 1.00 16 48 H 0.07 1.24 6.87 -2.39 -0.02 1.23 16 49 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.04 1.20 6.55 -2.39 -0.02 1.19 16 Total: -1.00 -77.52 382.78 4.76 -72.76 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.04 Total: 30.79 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 5.49 Total: -5.81 kcal Atomic # 7 Polarization: -123.85 SS G_CDS: -3.48 Total: -127.33 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.80 Total: -17.89 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.90 Total: 47.47 kcal Total: -77.52 4.76 -72.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753530121.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.883 kcal (2) G-P(sol) polarization free energy of solvation -77.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds