Wall clock time and date at job start Tue Mar 31 2020 20:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33695 * 126.27475 * 2 1 4 4 C 1.30618 * 108.99528 * 179.82547 * 3 2 1 5 5 C 1.50697 * 125.42242 * 180.16885 * 4 3 2 6 6 C 1.53000 * 109.47297 * 300.31581 * 5 4 3 7 7 C 1.53001 * 109.46931 * 60.31439 * 5 4 3 8 8 O 1.33662 * 109.15141 * 0.44432 * 4 3 2 9 9 C 1.35342 * 107.68898 * 359.72844 * 8 4 3 10 10 C 1.46723 * 126.64694 * 180.02562 * 9 8 4 11 11 O 1.21680 * 120.00155 * 179.97438 * 10 9 8 12 12 N 1.34783 * 119.99620 * 359.96609 * 10 9 8 13 13 C 1.46497 * 119.99692 * 179.97438 * 12 10 9 14 14 H 1.09003 * 110.67161 * 31.77497 * 13 12 10 15 15 C 1.54887 * 110.75978 * 268.33315 * 13 12 10 16 16 C 1.54263 * 104.19480 * 203.74308 * 15 13 12 17 17 C 1.53869 * 106.60270 * 23.60957 * 16 15 13 18 18 C 1.54268 * 106.59649 * 359.97438 * 17 16 15 19 19 H 1.09003 * 110.60029 * 95.12489 * 18 17 16 20 20 C 1.52999 * 110.48617 * 217.71104 * 18 17 16 21 21 N 1.46494 * 109.47160 * 289.77366 * 20 18 17 22 22 C 1.36940 * 120.00382 * 179.97438 * 21 20 18 23 23 H 1.08004 * 119.99503 * 0.02562 * 22 21 20 24 24 C 1.38809 * 120.00271 * 180.02562 * 22 21 20 25 25 N 1.31620 * 119.99666 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 120.00149 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.46737 * 90.00475 * 26 24 22 28 28 H 1.48493 * 109.47127 * 210.00257 * 26 24 22 29 29 H 1.48495 * 109.47248 * 330.00487 * 26 24 22 30 30 H 1.09002 * 109.47152 * 269.68933 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.69033 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.69014 * 1 2 3 33 33 H 1.08999 * 109.47066 * 180.31194 * 5 4 3 34 34 H 1.09001 * 109.46903 * 59.99987 * 6 5 4 35 35 H 1.09003 * 109.46693 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.46985 * 299.99960 * 6 5 4 37 37 H 1.09001 * 109.47432 * 300.00112 * 7 5 4 38 38 H 1.09002 * 109.46984 * 59.99648 * 7 5 4 39 39 H 1.08994 * 109.47418 * 179.97438 * 7 5 4 40 40 H 0.96997 * 119.99965 * 0.02562 * 12 10 9 41 41 H 1.08998 * 110.48313 * 322.42276 * 15 13 12 42 42 H 1.09008 * 110.48703 * 85.06843 * 15 13 12 43 43 H 1.09005 * 110.03179 * 264.32114 * 16 15 13 44 44 H 1.09005 * 110.07348 * 142.91823 * 16 15 13 45 45 H 1.08998 * 110.03552 * 240.71301 * 17 16 15 46 46 H 1.09000 * 110.07700 * 119.30268 * 17 16 15 47 47 H 1.08998 * 109.47362 * 49.77515 * 20 18 17 48 48 H 1.09004 * 109.47353 * 169.77219 * 20 18 17 49 49 H 0.97004 * 120.00341 * 359.97438 * 21 20 18 50 50 H 0.97001 * 119.99987 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5453 0.6899 0.0038 5 6 4.7440 1.6030 0.0087 6 6 4.7127 2.4926 -1.2358 7 6 4.7126 2.4791 1.2627 8 8 3.5890 -0.6460 -0.0035 9 6 2.3137 -1.0992 -0.0060 10 6 1.8826 -2.5017 -0.0131 11 8 0.6966 -2.7737 -0.0142 12 7 2.8004 -3.4887 -0.0186 13 6 2.3701 -4.8890 -0.0252 14 1 1.4279 -4.9995 -0.5621 15 6 2.2501 -5.4332 1.4200 16 6 2.4062 -6.9599 1.2634 17 6 3.1775 -7.1908 -0.0479 18 6 3.4626 -5.7963 -0.6428 19 1 4.4544 -5.4505 -0.3514 20 6 3.3345 -5.8281 -2.1671 21 7 4.4474 -6.5930 -2.7348 22 6 4.5435 -6.7581 -4.0908 23 1 3.7989 -6.3241 -4.7417 24 6 5.5978 -7.4834 -4.6288 25 7 5.6903 -7.6416 -5.9321 26 14 6.8859 -8.2335 -3.5030 27 1 6.4666 -9.6044 -3.1154 28 1 8.1882 -8.2966 -4.2138 29 1 7.0269 -7.3960 -2.2849 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3633 -0.8872 -0.5186 32 1 -0.3633 0.8928 -0.5090 33 1 5.6558 1.0057 0.0055 34 1 3.8009 3.0899 -1.2325 35 1 5.5796 3.1534 -1.2319 36 1 4.7351 1.8685 -2.1291 37 1 3.8009 3.0764 1.2659 38 1 4.7349 1.8453 2.1492 39 1 5.5799 3.1393 1.2665 40 1 3.7459 -3.2718 -0.0175 41 1 3.0460 -5.0306 2.0465 42 1 1.2735 -5.1906 1.8392 43 1 1.4252 -7.4318 1.2077 44 1 2.9686 -7.3666 2.1040 45 1 2.5709 -7.7748 -0.7400 46 1 4.1146 -7.7091 0.1555 47 1 2.3914 -6.2999 -2.4427 48 1 3.3582 -4.8097 -2.5550 49 1 5.1164 -6.9825 -2.1503 50 1 6.4272 -8.1481 -6.3081 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753900583.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:01 Heat of formation + Delta-G solvation = -26.802545 kcal Electronic energy + Delta-G solvation = -29249.844592 eV Core-core repulsion = 25278.061707 eV Total energy + Delta-G solvation = -3971.782885 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.69129 -40.01921 -38.14638 -36.26257 -35.47232 -34.65473 -33.73728 -31.57797 -31.24653 -29.12084 -28.64825 -27.64331 -27.17508 -24.84820 -24.30663 -22.32430 -21.81981 -21.03507 -20.71446 -20.55882 -19.74272 -18.28335 -17.48012 -17.17441 -16.72245 -16.48728 -15.10528 -14.99445 -14.86510 -14.76380 -14.52960 -14.45801 -13.90876 -13.63869 -13.55114 -13.42381 -13.27784 -13.24534 -12.67771 -12.63495 -12.55346 -12.44380 -12.18390 -12.14770 -11.76527 -11.68561 -11.54716 -11.17511 -11.12748 -11.08455 -11.00314 -10.83534 -10.64845 -10.50200 -10.34709 -10.23710 -10.07927 -9.60909 -9.27735 -8.91342 -8.91089 -7.24612 -5.77893 -3.13519 0.60188 2.11267 2.16291 2.92000 2.98627 3.34557 3.37136 3.42949 3.55658 4.31406 4.40712 4.51418 4.54387 4.57347 4.59636 4.65823 4.77831 4.89914 5.15502 5.19898 5.22159 5.25673 5.35857 5.38884 5.42501 5.46053 5.48041 5.49223 5.51928 5.57021 5.64836 5.65616 5.69747 5.76488 5.77057 5.80862 5.84317 5.94987 6.04891 6.12425 6.14818 6.27220 6.38266 6.43795 6.65059 6.75075 7.19009 7.42882 7.91044 7.98541 8.41060 9.20102 9.92199 10.12212 11.40672 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010343 B = 0.002973 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.412198 B = 9415.781080 C =10908.074152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.082 3.918 3 N -0.483 5.483 4 C 0.226 3.774 5 C -0.001 4.001 6 C -0.145 4.145 7 C -0.143 4.143 8 O -0.187 6.187 9 C -0.120 4.120 10 C 0.612 3.388 11 O -0.515 6.515 12 N -0.705 5.705 13 C 0.146 3.854 14 H 0.105 0.895 15 C -0.132 4.132 16 C -0.121 4.121 17 C -0.115 4.115 18 C -0.108 4.108 19 H 0.078 0.922 20 C 0.165 3.835 21 N -0.754 5.754 22 C -0.244 4.244 23 H 0.089 0.911 24 C 0.004 3.996 25 N -0.934 5.934 26 Si 0.885 3.115 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.405 0.595 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.066 0.934 47 H 0.030 0.970 48 H 0.025 0.975 49 H 0.361 0.639 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.534 17.728 18.882 26.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.043 4.043 3 N -0.213 5.213 4 C 0.020 3.980 5 C -0.020 4.020 6 C -0.203 4.203 7 C -0.201 4.201 8 O -0.073 6.073 9 C -0.174 4.174 10 C 0.397 3.603 11 O -0.393 6.393 12 N -0.354 5.354 13 C 0.041 3.959 14 H 0.123 0.877 15 C -0.171 4.171 16 C -0.159 4.159 17 C -0.153 4.153 18 C -0.127 4.127 19 H 0.097 0.903 20 C 0.038 3.962 21 N -0.400 5.400 22 C -0.373 4.373 23 H 0.107 0.893 24 C -0.192 4.192 25 N -0.582 5.582 26 Si 0.715 3.285 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.240 0.760 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.048 0.952 48 H 0.043 0.957 49 H 0.193 0.807 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.564 18.107 18.614 26.557 hybrid contribution 1.862 -1.222 0.616 2.311 sum -3.702 16.885 19.230 25.858 Atomic orbital electron populations 1.20391 0.85255 1.04470 1.03615 1.22075 0.98336 0.86372 0.97491 1.70277 1.00253 1.30955 1.19820 1.26580 0.95691 0.79138 0.96577 1.19795 0.90458 0.93177 0.98619 1.21859 1.03541 0.99363 0.95503 1.21848 1.03570 0.99435 0.95258 1.84457 1.29776 1.23753 1.69358 1.22923 0.81330 0.96332 1.16859 1.16281 0.85843 0.81275 0.76904 1.90849 1.15652 1.81833 1.50947 1.45891 1.09778 1.06166 1.73605 1.22137 0.99314 0.78103 0.96340 0.87733 1.22715 1.02082 0.95895 0.96417 1.22086 1.00652 0.95194 0.98004 1.22119 1.00705 0.96353 0.96159 1.22482 0.98075 0.95013 0.97127 0.90342 1.20668 0.91729 0.95205 0.88612 1.42676 1.28034 1.64440 1.04826 1.19066 1.08684 1.27982 0.81610 0.89285 1.24673 0.98537 1.00522 0.95454 1.69705 1.33269 1.45772 1.09504 0.86538 0.82138 0.79496 0.80293 1.21035 1.21739 1.20435 0.90091 0.88523 0.90484 0.88018 0.91061 0.90688 0.91915 0.91063 0.92203 0.90706 0.75961 0.91479 0.91196 0.91564 0.91817 0.90556 0.91554 0.95167 0.95702 0.80687 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.87 36.01 0.36 -0.50 16 2 C 0.08 1.05 7.16 -82.46 -0.59 0.46 16 3 N -0.48 -5.98 11.26 -7.07 -0.08 -6.05 16 4 C 0.23 2.50 6.82 -12.80 -0.09 2.41 16 5 C 0.00 -0.01 3.39 -91.77 -0.31 -0.32 16 6 C -0.14 -0.96 9.17 37.16 0.34 -0.62 16 7 C -0.14 -0.84 9.18 37.16 0.34 -0.50 16 8 O -0.19 -2.31 10.57 4.43 0.05 -2.27 16 9 C -0.12 -1.60 7.18 -36.84 -0.26 -1.86 16 10 C 0.61 8.55 7.79 -12.83 -0.10 8.45 16 11 O -0.52 -8.09 14.44 5.21 0.08 -8.02 16 12 N -0.71 -8.94 5.18 -53.18 -0.28 -9.22 16 13 C 0.15 1.89 2.69 -65.95 -0.18 1.72 16 14 H 0.10 1.51 7.46 -51.93 -0.39 1.12 16 15 C -0.13 -1.47 6.51 -25.08 -0.16 -1.64 16 16 C -0.12 -1.32 6.80 -25.62 -0.17 -1.49 16 17 C -0.12 -1.55 6.23 -25.61 -0.16 -1.71 16 18 C -0.11 -1.56 2.51 -88.97 -0.22 -1.79 16 19 H 0.08 1.12 8.01 -51.93 -0.42 0.70 16 20 C 0.17 3.16 5.59 -4.05 -0.02 3.14 16 21 N -0.75 -17.75 5.29 -59.91 -0.32 -18.07 16 22 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 23 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 24 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 25 N -0.93 -29.53 13.97 55.49 0.78 -28.75 16 26 Si 0.88 22.00 27.74 -169.99 -4.71 17.29 16 27 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 29 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.13 6.47 -51.93 -0.34 0.79 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.41 4.66 8.36 -40.82 -0.34 4.32 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 1.12 7.71 -51.93 -0.40 0.72 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.03 0.60 7.95 -51.93 -0.41 0.19 16 48 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.36 8.21 5.49 -40.82 -0.22 7.98 16 50 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 406.00 15.07 6.12 6.12 Total: -1.00 -33.60 406.00 -8.31 -41.91 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -8.45 Total: 8.41 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -1.49 Total: -1.34 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: 0.10 Total: -62.10 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.12 Total: -10.28 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.60 -8.31 -41.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753900583.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.109 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds