Wall clock time and date at job start Tue Mar 31 2020 20:12:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.33694 * 126.27266 * 2 1
4 4 C 1.30614 * 108.99449 * 180.02562 * 3 2 1
5 5 C 1.50703 * 125.42083 * 179.97438 * 4 3 2
6 6 C 1.53002 * 109.46966 * 60.02519 * 5 4 3
7 7 C 1.53000 * 109.46912 * 300.02607 * 5 4 3
8 8 O 1.33664 * 109.15701 * 0.24689 * 4 3 2
9 9 C 1.35349 * 107.68185 * 359.60551 * 8 4 3
10 10 C 1.46721 * 126.64446 * 180.17643 * 9 8 4
11 11 O 1.21686 * 120.00230 * 180.24582 * 10 9 8
12 12 N 1.34775 * 119.99880 * 0.24879 * 10 9 8
13 13 C 1.46502 * 120.00020 * 179.97438 * 12 10 9
14 14 H 1.08994 * 110.01841 * 325.06370 * 13 12 10
15 15 C 1.54272 * 110.02955 * 86.45590 * 13 12 10
16 16 C 1.54889 * 104.19460 * 142.89798 * 15 13 12
17 17 C 1.54890 * 102.74749 * 322.05272 * 16 15 13
18 18 C 1.53878 * 110.03312 * 203.61988 * 13 12 10
19 19 H 1.08995 * 110.03199 * 121.43490 * 18 13 12
20 20 C 1.53005 * 110.03111 * 0.02562 * 18 13 12
21 21 N 1.46497 * 109.46774 * 175.00145 * 20 18 13
22 22 C 1.36932 * 119.99871 * 180.02562 * 21 20 18
23 23 H 1.08005 * 120.00217 * 359.97438 * 22 21 20
24 24 C 1.38815 * 120.00146 * 179.97438 * 22 21 20
25 25 N 1.31620 * 119.99977 * 359.97438 * 24 22 21
26 26 Si 1.86806 * 119.99958 * 179.97438 * 24 22 21
27 27 H 1.48497 * 109.46834 * 89.99934 * 26 24 22
28 28 H 1.48503 * 109.46869 * 209.99505 * 26 24 22
29 29 H 1.48500 * 109.47281 * 329.99550 * 26 24 22
30 30 H 1.09005 * 109.47446 * 89.97099 * 1 2 3
31 31 H 1.09000 * 109.47142 * 209.97421 * 1 2 3
32 32 H 1.08998 * 109.47080 * 329.97258 * 1 2 3
33 33 H 1.09002 * 109.47152 * 180.02562 * 5 4 3
34 34 H 1.09002 * 109.47075 * 299.99352 * 6 5 4
35 35 H 1.08996 * 109.47407 * 60.00310 * 6 5 4
36 36 H 1.09000 * 109.46986 * 180.02562 * 6 5 4
37 37 H 1.09001 * 109.47194 * 299.99742 * 7 5 4
38 38 H 1.08992 * 109.47399 * 59.99914 * 7 5 4
39 39 H 1.09004 * 109.46724 * 180.02562 * 7 5 4
40 40 H 0.97003 * 120.00291 * 359.97438 * 12 10 9
41 41 H 1.09002 * 110.47888 * 261.57219 * 15 13 12
42 42 H 1.09000 * 110.48533 * 24.21625 * 15 13 12
43 43 H 1.08997 * 110.76247 * 80.36931 * 16 15 13
44 44 H 1.08998 * 110.75314 * 203.74479 * 16 15 13
45 45 H 1.08994 * 110.48601 * 156.62437 * 17 16 15
46 46 H 1.09001 * 110.48773 * 279.13495 * 17 16 15
47 47 H 1.09000 * 109.46918 * 295.00154 * 20 18 13
48 48 H 1.08997 * 109.46632 * 55.00139 * 20 18 13
49 49 H 0.96998 * 120.00442 * 359.97438 * 21 20 18
50 50 H 0.96996 * 119.99554 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2980 1.0779 0.0000
4 6 3.5452 0.6899 -0.0006
5 6 4.7440 1.6032 -0.0013
6 6 4.7135 2.4857 1.2482
7 6 4.7116 2.4862 -1.2503
8 8 3.5890 -0.6460 -0.0064
9 6 2.3137 -1.0992 -0.0006
10 6 1.8827 -2.5016 -0.0003
11 8 0.6966 -2.7737 0.0007
12 7 2.8004 -3.4886 -0.0010
13 6 2.3701 -4.8890 0.0000
14 1 1.4587 -4.9989 0.5875
15 6 2.1277 -5.3683 -1.4462
16 6 2.6263 -6.8347 -1.4491
17 6 3.8764 -6.7723 -0.5367
18 6 3.4821 -5.7818 0.5783
19 1 3.1104 -6.3257 1.4466
20 6 4.6887 -4.9273 0.9718
21 7 5.6904 -5.7703 1.6291
22 6 6.8636 -5.2205 2.0722
23 1 7.0507 -4.1654 1.9367
24 6 7.8127 -6.0192 2.6954
25 7 7.5846 -7.3048 2.8610
26 14 9.4135 -5.2692 3.2992
27 1 9.2455 -4.8057 4.7000
28 1 10.4909 -6.2895 3.2413
29 1 9.7765 -4.1164 2.4364
30 1 -0.3634 0.0005 -1.0277
31 1 -0.3633 -0.8902 0.5134
32 1 -0.3633 0.8897 0.5142
33 1 5.6558 1.0059 -0.0021
34 1 3.8017 3.0831 1.2489
35 1 4.7366 1.8567 2.1380
36 1 5.5803 3.1466 1.2474
37 1 4.7333 1.8574 -2.1405
38 1 3.7998 3.0834 -1.2496
39 1 5.5789 3.1464 -1.2511
40 1 3.7459 -3.2718 -0.0021
41 1 1.0659 -5.3259 -1.6891
42 1 2.7051 -4.7676 -2.1490
43 1 1.8729 -7.4998 -1.0271
44 1 2.8989 -7.1480 -2.4568
45 1 4.0909 -7.7546 -0.1159
46 1 4.7368 -6.4006 -1.0932
47 1 5.1220 -4.4773 0.0786
48 1 4.3695 -4.1414 1.6563
49 1 5.5224 -6.7178 1.7511
50 1 8.2476 -7.8628 3.2968
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001753900584.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:12:04
Heat of formation + Delta-G solvation = -21.678663 kcal
Electronic energy + Delta-G solvation = -29664.347985 eV
Core-core repulsion = 25692.787288 eV
Total energy + Delta-G solvation = -3971.560697 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-43.59397 -40.07211 -38.06227 -36.15949 -35.35336 -34.40594 -33.63429 -31.45208
-31.16281 -28.74300 -28.46417 -27.54870 -27.00768 -24.68421 -24.35355 -22.53794
-22.21625 -20.89436 -20.63315 -20.45452 -19.07722 -18.33225 -17.15870 -17.06933
-16.45644 -16.07671 -15.31876 -14.91683 -14.81429 -14.70668 -14.49406 -14.39140
-13.81392 -13.63622 -13.47027 -13.35415 -13.20248 -13.06560 -12.93881 -12.54323
-12.47439 -12.23522 -12.06602 -11.72557 -11.66056 -11.44223 -11.36502 -11.08491
-10.92194 -10.90047 -10.87580 -10.84280 -10.53902 -10.43948 -10.33516 -10.14388
-9.99485 -9.73027 -9.20249 -8.93321 -8.79872 -6.97969 -5.81092 -3.10159
0.70035 2.23016 2.24948 3.02597 3.12051 3.40094 3.45047 3.46834
3.65593 4.42013 4.48467 4.54485 4.64675 4.66313 4.70026 4.77415
4.90249 5.06350 5.25790 5.29172 5.31541 5.41129 5.45008 5.47320
5.49988 5.52842 5.56063 5.59288 5.62242 5.69762 5.71817 5.78080
5.81567 5.85954 5.88664 5.91782 6.01616 6.10112 6.17924 6.19065
6.24812 6.41301 6.51537 6.54987 6.65795 6.76737 7.31024 7.53882
7.64549 8.02345 8.37415 9.49020 10.05629 10.40802 11.41643
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.008181 B = 0.003786 C = 0.002749
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3421.869521 B = 7393.300411 C =10183.884568
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C 0.079 3.921
3 N -0.485 5.485
4 C 0.227 3.773
5 C -0.003 4.003
6 C -0.144 4.144
7 C -0.143 4.143
8 O -0.184 6.184
9 C -0.118 4.118
10 C 0.608 3.392
11 O -0.521 6.521
12 N -0.707 5.707
13 C 0.148 3.852
14 H 0.093 0.907
15 C -0.132 4.132
16 C -0.124 4.124
17 C -0.112 4.112
18 C -0.108 4.108
19 H 0.085 0.915
20 C 0.156 3.844
21 N -0.727 5.727
22 C -0.242 4.242
23 H 0.069 0.931
24 C -0.011 4.011
25 N -0.932 5.932
26 Si 0.906 3.094
27 H -0.290 1.290
28 H -0.291 1.291
29 H -0.282 1.282
30 H 0.080 0.920
31 H 0.095 0.905
32 H 0.075 0.925
33 H 0.103 0.897
34 H 0.069 0.931
35 H 0.061 0.939
36 H 0.074 0.926
37 H 0.059 0.941
38 H 0.070 0.930
39 H 0.074 0.926
40 H 0.412 0.588
41 H 0.069 0.931
42 H 0.068 0.932
43 H 0.067 0.933
44 H 0.066 0.934
45 H 0.071 0.929
46 H 0.072 0.928
47 H 0.017 0.983
48 H 0.020 0.980
49 H 0.385 0.615
50 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.069 14.813 -9.454 20.768
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.046 4.046
3 N -0.214 5.214
4 C 0.021 3.979
5 C -0.022 4.022
6 C -0.202 4.202
7 C -0.201 4.201
8 O -0.070 6.070
9 C -0.174 4.174
10 C 0.393 3.607
11 O -0.400 6.400
12 N -0.360 5.360
13 C 0.044 3.956
14 H 0.111 0.889
15 C -0.171 4.171
16 C -0.162 4.162
17 C -0.149 4.149
18 C -0.127 4.127
19 H 0.103 0.897
20 C 0.028 3.972
21 N -0.372 5.372
22 C -0.373 4.373
23 H 0.087 0.913
24 C -0.208 4.208
25 N -0.580 5.580
26 Si 0.737 3.263
27 H -0.217 1.217
28 H -0.217 1.217
29 H -0.208 1.208
30 H 0.098 0.902
31 H 0.114 0.886
32 H 0.094 0.906
33 H 0.122 0.878
34 H 0.089 0.911
35 H 0.081 0.919
36 H 0.093 0.907
37 H 0.078 0.922
38 H 0.089 0.911
39 H 0.093 0.907
40 H 0.251 0.749
41 H 0.088 0.912
42 H 0.087 0.913
43 H 0.086 0.914
44 H 0.085 0.915
45 H 0.089 0.911
46 H 0.090 0.910
47 H 0.035 0.965
48 H 0.038 0.962
49 H 0.219 0.781
50 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -11.877 15.293 -9.412 21.530
hybrid contribution 1.677 -0.570 0.474 1.833
sum -10.200 14.724 -8.938 20.018
Atomic orbital electron populations
1.20367 0.85342 1.04306 1.03555 1.22048 0.98269 0.86410 0.97842
1.70267 1.00253 1.30936 1.19991 1.26573 0.95639 0.79184 0.96506
1.19809 0.90624 0.93210 0.98560 1.21849 1.03440 0.99392 0.95494
1.21843 1.03473 0.99365 0.95385 1.84495 1.29717 1.23708 1.69120
1.22953 0.81361 0.96385 1.16653 1.16339 0.85885 0.81404 0.77029
1.90824 1.15739 1.81949 1.51479 1.46360 1.10460 1.06133 1.72998
1.21770 0.98288 0.78687 0.96895 0.88912 1.22774 1.01359 0.96762
0.96159 1.22490 0.97976 0.95745 0.99980 1.22361 0.97291 0.99511
0.95765 1.22228 0.95192 0.96423 0.98857 0.89710 1.20680 0.88309
0.93314 0.94858 1.42299 1.16742 1.08283 1.69839 1.19206 0.93728
0.93478 1.30922 0.91282 1.24732 0.98813 0.95615 1.01597 1.69656
1.35706 1.04090 1.48559 0.86205 0.83455 0.77900 0.78719 1.21692
1.21712 1.20752 0.90154 0.88620 0.90600 0.87850 0.91150 0.91947
0.90706 0.92159 0.91134 0.90719 0.74882 0.91245 0.91316 0.91428
0.91542 0.91061 0.90977 0.96522 0.96230 0.78098 0.93462
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.88 9.87 36.01 0.36 -0.52 16
2 C 0.08 1.08 7.16 -82.46 -0.59 0.49 16
3 N -0.48 -6.44 11.26 -7.07 -0.08 -6.52 16
4 C 0.23 2.81 6.82 -12.79 -0.09 2.72 16
5 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16
6 C -0.14 -1.11 9.18 37.16 0.34 -0.77 16
7 C -0.14 -1.03 9.18 37.16 0.34 -0.68 16
8 O -0.18 -2.60 10.57 4.41 0.05 -2.56 16
9 C -0.12 -1.73 7.18 -36.84 -0.26 -2.00 16
10 C 0.61 9.20 7.78 -12.84 -0.10 9.10 16
11 O -0.52 -8.49 14.47 5.20 0.08 -8.42 16
12 N -0.71 -10.25 4.42 -54.01 -0.24 -10.49 16
13 C 0.15 2.08 3.21 -66.81 -0.21 1.87 16
14 H 0.09 1.34 7.60 -51.93 -0.39 0.94 16
15 C -0.13 -1.64 6.53 -25.07 -0.16 -1.80 16
16 C -0.12 -1.47 6.91 -24.74 -0.17 -1.65 16
17 C -0.11 -1.64 6.08 -25.07 -0.15 -1.80 16
18 C -0.11 -1.70 2.96 -89.50 -0.26 -1.96 16
19 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16
20 C 0.16 3.03 4.18 -4.04 -0.02 3.01 16
21 N -0.73 -17.92 5.45 -59.91 -0.33 -18.25 16
22 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16
23 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16
24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16
25 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16
26 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16
27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
28 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16
29 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16
31 H 0.10 1.15 6.47 -51.93 -0.34 0.81 16
32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16
34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16
37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16
39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
40 H 0.41 6.06 5.63 -40.82 -0.23 5.83 16
41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
42 H 0.07 0.86 8.05 -51.93 -0.42 0.45 16
43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16
46 H 0.07 1.15 7.77 -51.93 -0.40 0.75 16
47 H 0.02 0.33 7.12 -51.93 -0.37 -0.04 16
48 H 0.02 0.40 7.40 -51.93 -0.38 0.01 16
49 H 0.39 9.98 7.55 -40.82 -0.31 9.67 16
50 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
LS Contribution 403.73 15.07 6.08 6.08
Total: -1.00 -31.72 403.73 -8.59 -40.31
By element:
Atomic # 1 Polarization: 19.69 SS G_CDS: -8.31 Total: 11.38 kcal
Atomic # 6 Polarization: -0.02 SS G_CDS: -1.54 Total: -1.56 kcal
Atomic # 7 Polarization: -62.40 SS G_CDS: 0.08 Total: -62.32 kcal
Atomic # 8 Polarization: -11.09 SS G_CDS: 0.12 Total: -10.97 kcal
Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal
Total LS contribution 6.08 Total: 6.08 kcal
Total: -31.72 -8.59 -40.31 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753900584.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.632 kcal
(2) G-P(sol) polarization free energy of solvation -31.718 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.087 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.310 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.679 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds