Wall clock time and date at job start Tue Mar 31 2020 19:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50695 * 109.47330 * 2 1 4 4 C 1.35269 * 119.50004 * 98.96703 * 3 2 1 5 5 C 1.41148 * 119.87283 * 179.73641 * 4 3 2 6 6 C 1.48455 * 120.54020 * 180.26597 * 5 4 3 7 7 O 1.21473 * 119.99843 * 129.61253 * 6 5 4 8 8 N 1.34775 * 120.00390 * 309.60712 * 6 5 4 9 9 C 1.46498 * 120.00484 * 185.98369 * 8 6 5 10 10 C 1.50695 * 109.47064 * 92.94894 * 9 8 6 11 11 H 1.07996 * 120.00568 * 4.93654 * 10 9 8 12 12 C 1.37881 * 119.99736 * 184.93313 * 10 9 8 13 13 N 1.31514 * 120.00221 * 184.85836 * 12 10 9 14 14 Si 1.86799 * 119.99921 * 4.86071 * 12 10 9 15 15 H 1.48501 * 109.47287 * 93.71681 * 14 12 10 16 16 H 1.48501 * 109.46999 * 213.71140 * 14 12 10 17 17 H 1.48496 * 109.47147 * 333.71397 * 14 12 10 18 18 C 1.46506 * 119.99449 * 5.98295 * 8 6 5 19 19 C 1.52997 * 109.47084 * 102.46746 * 18 8 6 20 20 C 1.52994 * 109.47348 * 179.97438 * 19 18 8 21 21 N 1.46896 * 109.47399 * 180.02562 * 20 19 18 22 22 C 1.46900 * 111.00329 * 66.04068 * 21 20 19 23 23 C 1.46903 * 111.00232 * 189.99707 * 21 20 19 24 24 C 1.38299 * 118.92014 * 0.52847 * 5 4 3 25 25 C 1.40955 * 119.01560 * 359.74306 * 24 5 4 26 26 O 1.22014 * 119.96680 * 179.97438 * 25 24 5 27 27 N 1.34601 * 120.07225 * 359.97438 * 25 24 5 28 28 H 0.97001 * 119.43622 * 179.97438 * 27 25 24 29 29 H 1.09007 * 109.47373 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47197 * 299.99352 * 1 2 3 31 31 H 1.09000 * 109.47619 * 59.99503 * 1 2 3 32 32 H 1.09006 * 109.47083 * 239.99951 * 2 1 3 33 33 H 1.09000 * 109.47619 * 120.00497 * 2 1 3 34 34 H 1.08001 * 120.06314 * 0.02562 * 4 3 2 35 35 H 1.08997 * 109.47350 * 212.95326 * 9 8 6 36 36 H 1.09004 * 109.46439 * 332.95051 * 9 8 6 37 37 H 0.97000 * 120.00118 * 180.02562 * 13 12 10 38 38 H 1.09000 * 109.46853 * 222.46281 * 18 8 6 39 39 H 1.08997 * 109.47479 * 342.46458 * 18 8 6 40 40 H 1.09000 * 109.46895 * 299.99509 * 19 18 8 41 41 H 1.09007 * 109.47282 * 59.99467 * 19 18 8 42 42 H 1.09003 * 109.47198 * 299.99403 * 20 19 18 43 43 H 1.08997 * 109.47338 * 59.99637 * 20 19 18 44 44 H 1.09001 * 109.46862 * 60.00245 * 22 21 20 45 45 H 1.09000 * 109.47423 * 179.97438 * 22 21 20 46 46 H 1.09001 * 109.47306 * 300.00421 * 22 21 20 47 47 H 1.09004 * 109.47068 * 59.99696 * 23 21 20 48 48 H 1.09001 * 109.47158 * 179.97438 * 23 21 20 49 49 H 1.09000 * 109.47011 * 299.99620 * 23 21 20 50 50 H 1.07996 * 120.49233 * 179.75572 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.4274 1.9876 1.1629 5 6 2.9045 3.3159 1.1711 6 6 3.3474 3.9506 2.4380 7 8 4.4271 4.5042 2.4949 8 7 2.5515 3.9127 3.5250 9 6 2.9275 4.6492 4.7343 10 6 2.2934 6.0159 4.7076 11 1 1.6092 6.2785 3.9143 12 6 2.5866 6.9314 5.6960 13 7 1.9620 8.0883 5.7272 14 14 3.8712 6.5283 6.9910 15 1 5.1899 7.0599 6.5623 16 1 3.4835 7.1494 8.2829 17 1 3.9614 5.0554 7.1571 18 6 1.3102 3.1349 3.4971 19 6 1.5153 1.8200 4.2520 20 6 0.2189 1.0080 4.2235 21 7 0.4156 -0.2542 4.9487 22 6 0.6435 -0.0096 6.3792 23 6 -0.7215 -1.1616 4.7444 24 6 2.9475 4.0185 -0.0193 25 6 2.5191 3.3846 -1.2032 26 8 2.5492 3.9883 -2.2630 27 7 2.0767 2.1139 -1.1657 28 1 1.7837 1.6867 -1.9859 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.3822 1.4232 2.0827 35 1 2.5816 4.1052 5.6133 36 1 4.0119 4.7524 4.7743 37 1 2.1687 8.7325 6.4224 38 1 0.5129 3.7062 3.9725 39 1 1.0380 2.9219 2.4634 40 1 2.3127 1.2488 3.7766 41 1 1.7876 2.0331 5.2857 42 1 -0.5782 1.5794 4.6991 43 1 -0.0537 0.7949 3.1899 44 1 -0.2194 0.5054 6.8016 45 1 0.7856 -0.9606 6.8924 46 1 1.5327 0.6081 6.5051 47 1 -0.8245 -1.3814 3.6817 48 1 -0.5497 -2.0883 5.2918 49 1 -1.6337 -0.6883 5.1076 50 1 3.3042 5.0376 -0.0417 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181456197.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:00 Heat of formation + Delta-G solvation = -34.774833 kcal Electronic energy + Delta-G solvation = -30318.765814 eV Core-core repulsion = 26346.637225 eV Total energy + Delta-G solvation = -3972.128589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.40446 -39.32874 -37.83000 -37.36604 -35.52988 -34.14396 -33.22814 -32.63744 -31.50695 -29.21700 -28.43354 -27.74706 -26.22625 -25.25494 -24.17903 -22.84954 -22.40512 -21.78248 -20.85534 -18.84432 -18.55913 -17.45273 -16.95555 -16.90369 -16.08914 -15.84935 -15.55753 -15.29205 -15.21319 -14.89938 -14.54300 -14.49351 -14.24505 -14.11343 -13.85186 -13.50683 -13.28742 -12.83253 -12.58375 -12.54507 -12.43936 -12.24971 -11.92053 -11.82818 -11.81642 -11.73322 -11.64392 -11.47937 -11.44010 -11.34857 -10.91519 -10.69572 -10.54480 -10.32931 -10.15723 -10.14263 -9.60632 -9.22811 -8.61125 -8.54271 -8.03164 -7.83953 -6.13442 -4.12963 0.59058 1.65315 2.78156 3.10986 3.26523 3.33520 3.36434 3.46971 3.66416 3.86683 4.08867 4.36507 4.46595 4.65978 4.75287 4.82857 4.88772 4.96952 5.06747 5.09492 5.11842 5.20458 5.23027 5.28815 5.33822 5.38373 5.41602 5.46526 5.48380 5.51583 5.61284 5.61932 5.76953 5.77829 5.83829 5.87418 6.09054 6.14301 6.26272 6.39394 6.48478 6.65271 6.82515 6.85824 6.86505 6.87443 7.20689 7.54731 7.95785 8.05205 8.39731 8.72301 8.90494 9.46739 10.99547 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007916 B = 0.004888 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3536.132550 B = 5727.378822 C = 8618.765493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 C 0.155 3.845 4 C -0.211 4.211 5 C -0.009 4.009 6 C 0.548 3.452 7 O -0.525 6.525 8 N -0.578 5.578 9 C 0.217 3.783 10 C -0.535 4.535 11 H 0.076 0.924 12 C 0.075 3.925 13 N -0.894 5.894 14 Si 0.876 3.124 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.265 1.265 18 C 0.103 3.897 19 C -0.137 4.137 20 C 0.056 3.944 21 N -0.546 5.546 22 C 0.019 3.981 23 C 0.024 3.976 24 C -0.194 4.194 25 C 0.522 3.478 26 O -0.551 6.551 27 N -0.602 5.602 28 H 0.411 0.589 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.157 0.843 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.265 0.735 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.075 0.925 44 H 0.027 0.973 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.024 0.976 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.725 -23.573 -5.952 25.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.130 4.130 3 C 0.046 3.954 4 C -0.234 4.234 5 C -0.016 4.016 6 C 0.334 3.666 7 O -0.402 6.402 8 N -0.308 5.308 9 C 0.097 3.903 10 C -0.573 4.573 11 H 0.094 0.906 12 C -0.128 4.128 13 N -0.532 5.532 14 Si 0.702 3.298 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.190 1.190 18 C -0.022 4.022 19 C -0.176 4.176 20 C -0.072 4.072 21 N -0.270 5.270 22 C -0.129 4.129 23 C -0.124 4.124 24 C -0.217 4.217 25 C 0.323 3.677 26 O -0.434 6.434 27 N -0.235 5.235 28 H 0.249 0.751 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.174 0.826 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.045 0.955 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.043 0.957 50 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.667 -22.824 -6.478 24.393 hybrid contribution -0.309 0.235 0.872 0.955 sum -5.976 -22.589 -5.606 24.029 Atomic orbital electron populations 1.21795 0.93451 1.02760 1.02891 1.20834 0.97204 0.89895 1.05075 1.20341 0.95356 0.94064 0.85656 1.20826 1.08741 0.95752 0.98089 1.20673 0.92275 0.93868 0.94811 1.18247 0.84976 0.80362 0.83037 1.90775 1.21602 1.44106 1.83669 1.47814 1.21296 1.47510 1.14209 1.19725 0.97281 0.92087 0.81216 1.21294 1.27986 0.96218 1.11838 0.90615 1.24842 0.95773 0.94738 0.97406 1.69898 1.41448 1.07536 1.34294 0.86866 0.82681 0.79102 0.81131 1.19848 1.21089 1.18981 1.21658 0.87937 0.91400 1.01171 1.22106 0.97508 0.95505 1.02458 1.22098 0.97105 0.89327 0.98694 1.61996 1.40539 1.13873 1.10618 1.22461 1.01277 1.01481 0.87702 1.22372 0.91420 0.96601 1.02006 1.22573 1.06286 1.02790 0.90010 1.17026 0.79562 0.80432 0.90684 1.90992 1.57569 1.63022 1.31779 1.43467 1.55368 1.14269 1.10398 0.75149 0.91349 0.91574 0.92498 0.89885 0.88132 0.82588 0.95101 0.94042 0.92481 0.89908 0.90148 0.90911 0.90823 0.94272 0.90671 0.95477 0.91671 0.90704 0.91432 0.91585 0.95741 0.82466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.89 37.15 0.37 -0.31 16 2 C -0.09 -0.46 6.16 -27.89 -0.17 -0.63 16 3 C 0.15 1.37 6.05 -81.94 -0.50 0.88 16 4 C -0.21 -2.41 7.01 -39.54 -0.28 -2.69 16 5 C -0.01 -0.15 4.96 -104.56 -0.52 -0.67 16 6 C 0.55 11.08 7.26 -12.05 -0.09 11.00 16 7 O -0.52 -12.83 16.56 5.39 0.09 -12.75 16 8 N -0.58 -11.29 2.48 -175.95 -0.44 -11.73 16 9 C 0.22 5.08 4.21 -5.20 -0.02 5.06 16 10 C -0.54 -14.90 9.93 -34.44 -0.34 -15.25 16 11 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 12 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 13 N -0.89 -27.10 13.96 55.43 0.77 -26.33 16 14 Si 0.88 21.27 27.41 -169.99 -4.66 16.61 16 15 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 17 H -0.27 -6.02 6.67 56.52 0.38 -5.65 16 18 C 0.10 1.49 4.92 -4.04 -0.02 1.47 16 19 C -0.14 -1.61 4.81 -26.74 -0.13 -1.73 16 20 C 0.06 0.53 4.96 -3.83 -0.02 0.51 16 21 N -0.55 -5.00 5.02 -251.26 -1.26 -6.26 16 22 C 0.02 0.18 9.32 60.06 0.56 0.74 16 23 C 0.02 0.17 9.57 60.07 0.57 0.75 16 24 C -0.19 -3.23 9.77 -38.53 -0.38 -3.60 16 25 C 0.52 7.93 7.70 -15.31 -0.12 7.81 16 26 O -0.55 -10.20 17.93 4.91 0.09 -10.12 16 27 N -0.60 -6.23 5.22 -11.19 -0.06 -6.29 16 28 H 0.41 3.14 8.75 -40.82 -0.36 2.78 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.34 7.91 -51.93 -0.41 -0.08 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.10 0.44 7.95 -51.93 -0.41 0.03 16 34 H 0.16 1.57 4.58 -52.49 -0.24 1.33 16 35 H 0.03 0.68 7.10 -51.93 -0.37 0.31 16 36 H 0.04 1.05 6.27 -51.93 -0.33 0.72 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.08 1.01 4.96 -51.93 -0.26 0.76 16 40 H 0.07 0.82 6.21 -51.93 -0.32 0.50 16 41 H 0.07 0.98 5.98 -51.93 -0.31 0.67 16 42 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 43 H 0.07 0.58 7.83 -51.93 -0.41 0.17 16 44 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 46 H 0.07 0.76 6.47 -51.93 -0.34 0.42 16 47 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 48 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 49 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 50 H 0.16 2.84 8.06 -52.49 -0.42 2.42 16 LS Contribution 401.23 15.07 6.05 6.05 Total: -1.00 -36.09 401.23 -8.57 -44.66 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.98 Total: 0.77 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -1.17 Total: 5.38 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.98 Total: -50.61 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.18 Total: -22.86 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.66 Total: 16.61 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.09 -8.57 -44.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181456197.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.883 kcal (2) G-P(sol) polarization free energy of solvation -36.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds