Wall clock time and date at job start Tue Mar 31 2020 19:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50695 * 109.47330 * 2 1 4 4 C 1.35269 * 119.50004 * 98.96703 * 3 2 1 5 5 C 1.41148 * 119.87283 * 179.73641 * 4 3 2 6 6 C 1.48455 * 120.54020 * 180.26597 * 5 4 3 7 7 O 1.21473 * 119.99843 * 129.61253 * 6 5 4 8 8 N 1.34775 * 120.00390 * 309.60712 * 6 5 4 9 9 C 1.46498 * 120.00484 * 185.98369 * 8 6 5 10 10 C 1.50695 * 109.47064 * 92.94894 * 9 8 6 11 11 H 1.07996 * 120.00568 * 4.93654 * 10 9 8 12 12 C 1.37881 * 119.99736 * 184.93313 * 10 9 8 13 13 N 1.31514 * 120.00221 * 184.85836 * 12 10 9 14 14 Si 1.86799 * 119.99921 * 4.86071 * 12 10 9 15 15 H 1.48501 * 109.47287 * 93.71681 * 14 12 10 16 16 H 1.48501 * 109.46999 * 213.71140 * 14 12 10 17 17 H 1.48496 * 109.47147 * 333.71397 * 14 12 10 18 18 C 1.46506 * 119.99449 * 5.98295 * 8 6 5 19 19 C 1.52997 * 109.47084 * 102.46746 * 18 8 6 20 20 C 1.52994 * 109.47348 * 179.97438 * 19 18 8 21 21 N 1.46896 * 109.47399 * 180.02562 * 20 19 18 22 22 C 1.46900 * 111.00329 * 66.04068 * 21 20 19 23 23 C 1.46903 * 111.00232 * 189.99707 * 21 20 19 24 24 C 1.38299 * 118.92014 * 0.52847 * 5 4 3 25 25 C 1.40955 * 119.01560 * 359.74306 * 24 5 4 26 26 O 1.22014 * 119.96680 * 179.97438 * 25 24 5 27 27 N 1.34601 * 120.07225 * 359.97438 * 25 24 5 28 28 H 0.97001 * 119.43622 * 179.97438 * 27 25 24 29 29 H 1.09007 * 109.47373 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47197 * 299.99352 * 1 2 3 31 31 H 1.09000 * 109.47619 * 59.99503 * 1 2 3 32 32 H 1.09006 * 109.47083 * 239.99951 * 2 1 3 33 33 H 1.09000 * 109.47619 * 120.00497 * 2 1 3 34 34 H 1.08001 * 120.06314 * 0.02562 * 4 3 2 35 35 H 1.08997 * 109.47350 * 212.95326 * 9 8 6 36 36 H 1.09004 * 109.46439 * 332.95051 * 9 8 6 37 37 H 0.97000 * 120.00118 * 180.02562 * 13 12 10 38 38 H 1.09000 * 109.46853 * 222.46281 * 18 8 6 39 39 H 1.08997 * 109.47479 * 342.46458 * 18 8 6 40 40 H 1.09000 * 109.46895 * 299.99509 * 19 18 8 41 41 H 1.09007 * 109.47282 * 59.99467 * 19 18 8 42 42 H 1.09003 * 109.47198 * 299.99403 * 20 19 18 43 43 H 1.08997 * 109.47338 * 59.99637 * 20 19 18 44 44 H 1.09001 * 109.46862 * 60.00245 * 22 21 20 45 45 H 1.09000 * 109.47423 * 179.97438 * 22 21 20 46 46 H 1.09001 * 109.47306 * 300.00421 * 22 21 20 47 47 H 1.09004 * 109.47068 * 59.99696 * 23 21 20 48 48 H 1.09001 * 109.47158 * 179.97438 * 23 21 20 49 49 H 1.09000 * 109.47011 * 299.99620 * 23 21 20 50 50 H 1.07996 * 120.49233 * 179.75572 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.4274 1.9876 1.1629 5 6 2.9045 3.3159 1.1711 6 6 3.3474 3.9506 2.4380 7 8 4.4271 4.5042 2.4949 8 7 2.5515 3.9127 3.5250 9 6 2.9275 4.6492 4.7343 10 6 2.2934 6.0159 4.7076 11 1 1.6092 6.2785 3.9143 12 6 2.5866 6.9314 5.6960 13 7 1.9620 8.0883 5.7272 14 14 3.8712 6.5283 6.9910 15 1 5.1899 7.0599 6.5623 16 1 3.4835 7.1494 8.2829 17 1 3.9614 5.0554 7.1571 18 6 1.3102 3.1349 3.4971 19 6 1.5153 1.8200 4.2520 20 6 0.2189 1.0080 4.2235 21 7 0.4156 -0.2542 4.9487 22 6 0.6435 -0.0096 6.3792 23 6 -0.7215 -1.1616 4.7444 24 6 2.9475 4.0185 -0.0193 25 6 2.5191 3.3846 -1.2032 26 8 2.5492 3.9883 -2.2630 27 7 2.0767 2.1139 -1.1657 28 1 1.7837 1.6867 -1.9859 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.3822 1.4232 2.0827 35 1 2.5816 4.1052 5.6133 36 1 4.0119 4.7524 4.7743 37 1 2.1687 8.7325 6.4224 38 1 0.5129 3.7062 3.9725 39 1 1.0380 2.9219 2.4634 40 1 2.3127 1.2488 3.7766 41 1 1.7876 2.0331 5.2857 42 1 -0.5782 1.5794 4.6991 43 1 -0.0537 0.7949 3.1899 44 1 -0.2194 0.5054 6.8016 45 1 0.7856 -0.9606 6.8924 46 1 1.5327 0.6081 6.5051 47 1 -0.8245 -1.3814 3.6817 48 1 -0.5497 -2.0883 5.2918 49 1 -1.6337 -0.6883 5.1076 50 1 3.3042 5.0376 -0.0417 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181456197.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:58 Heat of formation + Delta-G solvation = -62.097970 kcal Electronic energy + Delta-G solvation = -30319.950634 eV Core-core repulsion = 26346.637225 eV Total energy + Delta-G solvation = -3973.313410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.54196 -40.84746 -38.69931 -38.45082 -37.02067 -35.36058 -34.69558 -33.91293 -32.77066 -30.34057 -30.05022 -28.37334 -27.27464 -26.55709 -25.09394 -24.19481 -23.62740 -22.76324 -21.67224 -20.30663 -19.62477 -19.13165 -18.54877 -18.28491 -17.41835 -16.95498 -16.59938 -16.43485 -16.21672 -16.03212 -15.90336 -15.40607 -15.24841 -15.09233 -14.93334 -14.80925 -14.51021 -14.20718 -13.82926 -13.69734 -13.42928 -13.24949 -13.17357 -13.11627 -12.71817 -12.58947 -12.51411 -12.47084 -12.36792 -12.36227 -12.15997 -11.99440 -11.89138 -11.78144 -11.63772 -11.51301 -11.31689 -10.83025 -10.80416 -9.56390 -9.21675 -9.08948 -8.36561 -6.41793 -0.57905 0.57553 1.30836 1.36622 1.44370 1.54402 1.80493 2.03530 2.29162 2.47216 2.97755 3.06446 3.29015 3.39527 3.74623 3.92876 3.99667 4.09486 4.20527 4.27478 4.31079 4.40007 4.42248 4.47726 4.59593 4.62460 4.66410 4.74188 4.79406 4.80712 4.86722 4.89479 4.92436 4.98836 5.07852 5.09526 5.16359 5.17898 5.18377 5.20991 5.38483 5.43932 5.51754 5.53030 5.63541 5.80666 6.13670 6.17967 6.22168 6.48295 6.60206 6.83940 7.06708 7.24446 8.80148 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007916 B = 0.004888 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3536.132550 B = 5727.378822 C = 8618.765493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 C 0.199 3.801 4 C -0.227 4.227 5 C 0.006 3.994 6 C 0.539 3.461 7 O -0.579 6.579 8 N -0.580 5.580 9 C 0.226 3.774 10 C -0.541 4.541 11 H 0.031 0.969 12 C 0.016 3.984 13 N -0.942 5.942 14 Si 0.943 3.057 15 H -0.280 1.280 16 H -0.273 1.273 17 H -0.236 1.236 18 C 0.100 3.900 19 C -0.125 4.125 20 C 0.062 3.938 21 N -0.551 5.551 22 C 0.017 3.983 23 C 0.023 3.977 24 C -0.238 4.238 25 C 0.526 3.474 26 O -0.594 6.594 27 N -0.579 5.579 28 H 0.431 0.569 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.179 0.821 35 H 0.054 0.946 36 H 0.025 0.975 37 H 0.269 0.731 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.057 0.943 42 H 0.030 0.970 43 H 0.102 0.898 44 H 0.021 0.979 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.086 0.914 48 H 0.073 0.927 49 H 0.021 0.979 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.735 -28.812 -5.843 30.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.127 4.127 3 C 0.088 3.912 4 C -0.249 4.249 5 C -0.001 4.001 6 C 0.327 3.673 7 O -0.460 6.460 8 N -0.309 5.309 9 C 0.104 3.896 10 C -0.580 4.580 11 H 0.049 0.951 12 C -0.182 4.182 13 N -0.581 5.581 14 Si 0.766 3.234 15 H -0.206 1.206 16 H -0.198 1.198 17 H -0.159 1.159 18 C -0.023 4.023 19 C -0.164 4.164 20 C -0.067 4.067 21 N -0.274 5.274 22 C -0.131 4.131 23 C -0.125 4.125 24 C -0.261 4.261 25 C 0.327 3.673 26 O -0.480 6.480 27 N -0.211 5.211 28 H 0.272 0.728 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.196 0.804 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.120 0.880 44 H 0.040 0.960 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.104 0.896 48 H 0.092 0.908 49 H 0.039 0.961 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.741 -28.143 -6.382 29.634 hybrid contribution -0.107 1.788 0.791 1.958 sum -6.848 -26.355 -5.591 27.798 Atomic orbital electron populations 1.21842 0.92397 1.04159 1.02705 1.21104 0.97734 0.86270 1.07573 1.21092 0.90848 0.95416 0.83829 1.20948 1.10040 0.93729 1.00197 1.20437 0.92131 0.95615 0.91947 1.18965 0.84351 0.79710 0.84314 1.90730 1.24059 1.46512 1.84687 1.47862 1.22717 1.47271 1.13008 1.19405 0.95851 0.90550 0.83786 1.21523 1.27287 0.98705 1.10468 0.95073 1.25789 0.97931 0.94440 1.00078 1.70044 1.43405 1.08947 1.35726 0.85783 0.78782 0.80660 0.78173 1.20554 1.19800 1.15926 1.21939 0.85206 0.92020 1.03126 1.21965 0.99414 0.94059 1.00930 1.22042 0.95072 0.89230 1.00339 1.62002 1.41645 1.13629 1.10173 1.22468 1.00461 1.01880 0.88306 1.22454 0.90384 0.96225 1.03401 1.22296 1.09967 1.02343 0.91497 1.16662 0.79654 0.81698 0.89242 1.90962 1.59800 1.64509 1.32751 1.43312 1.53086 1.12681 1.12031 0.72818 0.89220 0.91882 0.92756 0.87111 0.86033 0.80447 0.92768 0.95676 0.92200 0.91452 0.87817 0.89758 0.92445 0.95168 0.87954 0.96043 0.90437 0.91971 0.89554 0.90844 0.96056 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.46 9.89 71.98 0.71 0.26 16 2 C -0.09 -0.33 6.16 29.84 0.18 -0.14 16 3 C 0.20 2.71 6.05 41.27 0.25 2.96 16 4 C -0.23 -4.56 7.01 22.30 0.16 -4.40 16 5 C 0.01 0.19 4.96 -19.82 -0.10 0.09 16 6 C 0.54 22.69 7.26 86.97 0.63 23.33 16 7 O -0.58 -30.07 16.56 -3.63 -0.06 -30.13 16 8 N -0.58 -23.16 2.48 -828.89 -2.06 -25.21 16 9 C 0.23 10.80 4.21 85.63 0.36 11.16 16 10 C -0.54 -31.60 9.93 25.60 0.25 -31.35 16 11 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 12 C 0.02 0.95 5.47 84.66 0.46 1.42 16 13 N -0.94 -59.41 13.96 21.45 0.30 -59.11 16 14 Si 0.94 44.47 27.41 68.60 1.88 46.35 16 15 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.24 -9.95 6.67 99.48 0.66 -9.29 16 18 C 0.10 2.82 4.92 86.38 0.43 3.24 16 19 C -0.13 -2.64 4.81 30.59 0.15 -2.50 16 20 C 0.06 0.95 4.96 86.30 0.43 1.37 16 21 N -0.55 -8.08 5.02 -948.85 -4.76 -12.84 16 22 C 0.02 0.28 9.32 127.69 1.19 1.47 16 23 C 0.02 0.23 9.57 127.69 1.22 1.46 16 24 C -0.24 -8.42 9.77 22.95 0.22 -8.20 16 25 C 0.53 16.08 7.70 84.93 0.65 16.73 16 26 O -0.59 -22.67 17.93 -5.36 -0.10 -22.76 16 27 N -0.58 -10.40 5.22 -307.51 -1.61 -12.00 16 28 H 0.43 4.95 8.75 -92.71 -0.81 4.14 16 29 H 0.09 0.00 8.14 -2.38 -0.02 -0.02 16 30 H 0.06 0.27 7.91 -2.39 -0.02 0.25 16 31 H 0.05 0.22 8.14 -2.39 -0.02 0.21 16 32 H 0.11 -0.01 8.14 -2.38 -0.02 -0.03 16 33 H 0.12 0.16 7.95 -2.39 -0.02 0.14 16 34 H 0.18 2.83 4.58 -2.91 -0.01 2.82 16 35 H 0.05 2.35 7.10 -2.39 -0.02 2.33 16 36 H 0.03 1.29 6.27 -2.38 -0.01 1.28 16 37 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 38 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.10 2.43 4.96 -2.39 -0.01 2.42 16 40 H 0.08 1.61 6.21 -2.39 -0.01 1.60 16 41 H 0.06 1.43 5.98 -2.38 -0.01 1.41 16 42 H 0.03 0.53 8.12 -2.39 -0.02 0.51 16 43 H 0.10 1.03 7.83 -2.39 -0.02 1.02 16 44 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.08 1.04 8.12 -2.39 -0.02 1.02 16 46 H 0.06 1.16 6.47 -2.39 -0.02 1.14 16 47 H 0.09 0.56 8.12 -2.39 -0.02 0.54 16 48 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16 49 H 0.02 0.23 8.14 -2.39 -0.02 0.21 16 50 H 0.12 5.09 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -87.12 401.23 0.90 -86.22 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.10 Total: 12.58 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 7.20 Total: 16.90 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -8.12 Total: -109.17 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -0.16 Total: -52.90 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal Total: -87.12 0.90 -86.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181456197.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.124 kcal (2) G-P(sol) polarization free energy of solvation -87.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds