Wall clock time and date at job start Tue Mar 31 2020 19:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47012 * 2 1 4 4 C 1.38046 * 126.28962 * 270.02572 * 3 2 1 5 5 C 1.47424 * 126.41577 * 359.93922 * 4 3 2 6 6 O 1.21602 * 120.00139 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00054 * 180.02562 * 5 4 3 8 8 C 1.47581 * 134.49265 * 180.02562 * 7 5 4 9 9 C 1.53948 * 86.11850 * 155.35738 * 8 7 5 10 10 O 1.42905 * 113.74202 * 269.15532 * 9 8 7 11 11 C 1.50702 * 113.74556 * 137.95339 * 9 8 7 12 12 H 1.07997 * 119.99574 * 1.92219 * 11 9 8 13 13 C 1.37874 * 120.00020 * 181.92586 * 11 9 8 14 14 N 1.31515 * 120.00312 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99617 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46988 * 180.02562 * 15 13 11 17 17 H 1.48506 * 109.47247 * 300.00062 * 15 13 11 18 18 H 1.48496 * 109.47238 * 60.00298 * 15 13 11 19 19 C 1.47812 * 134.45923 * 359.86720 * 7 5 4 20 20 C 1.41289 * 107.17010 * 180.20880 * 4 3 2 21 21 N 1.30454 * 108.02357 * 359.61282 * 20 4 3 22 22 N 1.34253 * 126.29514 * 90.00221 * 3 2 1 23 23 C 1.46504 * 125.75164 * 0.03628 * 22 3 2 24 24 C 1.53001 * 109.46852 * 119.99807 * 23 22 3 25 25 C 1.52998 * 109.47622 * 295.49064 * 24 23 22 26 26 C 1.52992 * 109.47488 * 240.00280 * 23 22 3 27 27 C 1.52999 * 109.47346 * 174.46622 * 26 23 22 28 28 H 1.09003 * 109.47055 * 300.00057 * 1 2 3 29 29 H 1.09003 * 109.47001 * 59.99711 * 1 2 3 30 30 H 1.09000 * 109.47566 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47055 * 239.99943 * 2 1 3 32 32 H 1.08998 * 109.46981 * 119.99793 * 2 1 3 33 33 H 1.08996 * 113.77174 * 41.06072 * 8 7 5 34 34 H 1.09005 * 113.77024 * 269.65634 * 8 7 5 35 35 H 0.96696 * 114.00112 * 178.07517 * 10 9 8 36 36 H 0.96996 * 119.99601 * 180.02562 * 14 13 11 37 37 H 1.09004 * 113.77143 * 90.37968 * 19 7 5 38 38 H 1.09005 * 113.83570 * 318.91978 * 19 7 5 39 39 H 1.08007 * 125.99218 * 179.73527 * 20 4 3 40 40 H 1.09006 * 109.46869 * 0.02562 * 23 22 3 41 41 H 1.09007 * 109.46792 * 55.49372 * 24 23 22 42 42 H 1.09004 * 109.46904 * 175.48660 * 24 23 22 43 43 H 1.08995 * 109.47026 * 305.45112 * 25 24 23 44 44 H 1.08999 * 109.46949 * 65.45295 * 25 24 23 45 45 H 1.09004 * 109.47149 * 185.44913 * 25 24 23 46 46 H 1.09008 * 109.47217 * 294.46678 * 26 23 22 47 47 H 1.08995 * 109.47704 * 54.46419 * 26 23 22 48 48 H 1.09007 * 109.47038 * 66.04789 * 27 26 23 49 49 H 1.08999 * 109.46934 * 186.04108 * 27 26 23 50 50 H 1.09000 * 109.47447 * 306.04798 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3042 2.1913 -1.1127 5 6 2.1587 1.7779 -2.5203 6 8 1.7638 0.6593 -2.7878 7 7 2.4633 2.6397 -3.5107 8 6 2.4392 2.5717 -4.9847 9 6 2.3018 4.1046 -4.9489 10 8 0.9475 4.5605 -4.9281 11 6 3.1446 4.8137 -5.9775 12 1 3.7441 4.2427 -6.6710 13 6 3.1504 6.1913 -6.0331 14 7 2.4208 6.8866 -5.1882 15 14 4.1957 7.0701 -7.3077 16 1 4.0276 8.5380 -7.1588 17 1 5.6233 6.7130 -7.1086 18 1 3.7675 6.6579 -8.6685 19 6 2.9528 4.0337 -3.5559 20 6 2.7540 3.4482 -0.6499 21 7 2.7409 3.4264 0.6544 22 7 2.2972 2.1701 1.0820 23 6 2.1475 1.7440 2.4758 24 6 3.5019 1.8269 3.1827 25 6 4.4717 0.8297 2.5455 26 6 1.1458 2.6584 3.1838 27 6 0.8848 2.1320 4.5965 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5640 2.0615 -5.3868 34 1 3.3746 2.2247 -5.4239 35 1 0.8569 5.5218 -4.8760 36 1 2.4246 7.8558 -5.2277 37 1 4.0395 4.1174 -3.5741 38 1 2.4868 4.6884 -2.8194 39 1 3.0540 4.2818 -1.2677 40 1 1.7852 0.7163 2.5046 41 1 3.9018 2.8362 3.0844 42 1 3.3758 1.5872 4.2385 43 1 4.0286 -0.1660 2.5571 44 1 4.6730 1.1259 1.5161 45 1 5.4044 0.8190 3.1095 46 1 1.5531 3.6678 3.2416 47 1 0.2107 2.6755 2.6240 48 1 1.7958 2.2154 5.1893 49 1 0.0933 2.7188 5.0624 50 1 0.5797 1.0869 4.5443 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331625161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:37 Heat of formation + Delta-G solvation = 6.941676 kcal Electronic energy + Delta-G solvation = -30306.590764 eV Core-core repulsion = 26336.271138 eV Total energy + Delta-G solvation = -3970.319626 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.40920 -39.17348 -37.26235 -36.74689 -34.13072 -33.67722 -32.17607 -32.15739 -31.21726 -29.43700 -28.20770 -26.56441 -25.28794 -25.16121 -23.64726 -23.12840 -22.24371 -21.47299 -19.60527 -19.25444 -18.18400 -17.40889 -16.83296 -15.87135 -15.70230 -15.37517 -15.02944 -14.83511 -14.53756 -14.38563 -14.20839 -14.18930 -14.00265 -13.71911 -13.15872 -12.91605 -12.78785 -12.54975 -12.46223 -12.31719 -12.28652 -12.08956 -11.89144 -11.80133 -11.59688 -11.51503 -11.38155 -11.31826 -11.02090 -10.96744 -10.93224 -10.87848 -10.48913 -10.44916 -10.23533 -9.52122 -9.19521 -9.08969 -8.71789 -8.40661 -8.28401 -7.67846 -6.34765 -4.44907 1.77721 2.41165 2.54766 3.19331 3.25175 3.27538 3.72240 4.05066 4.15648 4.23131 4.46861 4.53026 4.62021 4.84074 4.89245 4.90772 4.95194 5.04075 5.07555 5.16025 5.30353 5.34968 5.40511 5.43660 5.51550 5.59251 5.63630 5.67397 5.73380 5.76078 5.76606 5.87930 5.90681 5.95394 6.03129 6.03994 6.24706 6.27041 6.30459 6.46117 6.58219 6.64080 6.72770 6.89782 7.04847 7.16561 7.67217 7.81433 7.87433 8.57846 8.61991 8.97256 9.26188 9.48066 10.71750 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.003001 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.365589 B = 9327.493283 C = 9967.960738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C 0.149 3.851 4 C -0.277 4.277 5 C 0.607 3.393 6 O -0.572 6.572 7 N -0.628 5.628 8 C 0.115 3.885 9 C 0.239 3.761 10 O -0.572 6.572 11 C -0.537 4.537 12 H 0.070 0.930 13 C 0.073 3.927 14 N -0.898 5.898 15 Si 0.906 3.094 16 H -0.285 1.285 17 H -0.274 1.274 18 H -0.274 1.274 19 C 0.075 3.925 20 C 0.080 3.920 21 N -0.300 5.300 22 N -0.355 5.355 23 C 0.160 3.840 24 C -0.133 4.133 25 C -0.154 4.154 26 C -0.132 4.132 27 C -0.150 4.150 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.391 0.609 36 H 0.273 0.727 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.194 0.806 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.060 0.940 49 H 0.061 0.939 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.187 -8.925 17.666 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 C 0.017 3.983 4 C -0.291 4.291 5 C 0.398 3.602 6 O -0.455 6.455 7 N -0.360 5.360 8 C -0.006 4.006 9 C 0.198 3.802 10 O -0.383 6.383 11 C -0.575 4.575 12 H 0.088 0.912 13 C -0.130 4.130 14 N -0.538 5.538 15 Si 0.733 3.267 16 H -0.211 1.211 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.047 4.047 20 C -0.107 4.107 21 N -0.118 5.118 22 N -0.135 5.135 23 C 0.059 3.941 24 C -0.171 4.171 25 C -0.211 4.211 26 C -0.170 4.170 27 C -0.208 4.208 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.245 0.755 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.210 0.790 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.011 -9.419 18.917 21.133 hybrid contribution 0.633 0.924 -1.261 1.686 sum 0.622 -8.495 17.656 19.604 Atomic orbital electron populations 1.21641 0.93700 1.02118 1.02294 1.20388 0.96945 0.88839 1.04236 1.21392 0.95874 0.94693 0.86355 1.20037 1.19354 0.96200 0.93543 1.16821 0.77216 0.83165 0.82983 1.90642 1.50232 1.20389 1.84217 1.49914 1.63966 1.15348 1.06769 1.23404 1.00752 0.98302 0.78190 1.19835 0.81539 0.88727 0.90138 1.86068 1.25693 1.30063 1.96518 1.21472 1.26811 0.91670 1.17566 0.91156 1.25055 0.95058 0.97373 0.95504 1.69395 1.40255 1.07714 1.36388 0.86418 0.80503 0.78199 0.81550 1.21065 1.19938 1.19913 1.24409 0.99364 0.79223 1.01732 1.24516 0.96753 0.97733 0.91744 1.77105 1.22300 0.99229 1.13202 1.48522 1.49921 1.09716 1.05301 1.21506 0.97076 0.98871 0.76687 1.21938 0.93822 1.01775 0.99577 1.21773 0.99200 0.98651 1.01472 1.21846 0.98833 1.00189 0.96159 1.21792 1.02056 1.01276 0.95642 0.93447 0.91416 0.91789 0.87139 0.91429 0.91204 0.89782 0.75458 0.91681 0.90033 0.91145 0.78962 0.88199 0.90210 0.90020 0.92763 0.92526 0.92248 0.90262 0.91300 0.92127 0.91988 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.89 37.16 0.37 -1.32 16 2 C -0.07 -0.84 5.45 -27.88 -0.15 -1.00 16 3 C 0.15 2.30 6.26 -81.60 -0.51 1.79 16 4 C -0.28 -5.12 6.12 -105.07 -0.64 -5.76 16 5 C 0.61 12.92 8.05 -12.52 -0.10 12.82 16 6 O -0.57 -12.99 15.57 5.28 0.08 -12.91 16 7 N -0.63 -13.58 3.61 -179.38 -0.65 -14.23 16 8 C 0.12 2.54 8.23 -2.97 -0.02 2.52 16 9 C 0.24 5.72 1.40 -90.85 -0.13 5.59 16 10 O -0.57 -14.73 13.48 -35.23 -0.48 -15.20 16 11 C -0.54 -13.39 8.61 -34.44 -0.30 -13.69 16 12 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 13 C 0.07 1.80 5.39 -17.82 -0.10 1.71 16 14 N -0.90 -22.58 11.20 55.43 0.62 -21.96 16 15 Si 0.91 19.44 29.54 -169.99 -5.02 14.42 16 16 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 C 0.08 1.62 6.55 -2.85 -0.02 1.60 16 20 C 0.08 1.40 11.07 -16.98 -0.19 1.21 16 21 N -0.30 -4.86 12.33 30.86 0.38 -4.48 16 22 N -0.35 -4.91 2.78 -50.16 -0.14 -5.05 16 23 C 0.16 1.59 2.48 -67.93 -0.17 1.43 16 24 C -0.13 -1.18 5.40 -26.73 -0.14 -1.32 16 25 C -0.15 -1.43 9.73 37.16 0.36 -1.07 16 26 C -0.13 -1.21 5.65 -26.74 -0.15 -1.36 16 27 C -0.15 -0.95 9.53 37.16 0.35 -0.60 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.11 1.67 6.50 -51.93 -0.34 1.33 16 32 H 0.07 0.67 7.07 -51.93 -0.37 0.31 16 33 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.08 1.70 8.09 -51.93 -0.42 1.28 16 35 H 0.39 10.13 6.60 45.56 0.30 10.43 16 36 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 37 H 0.08 1.68 8.09 -51.93 -0.42 1.26 16 38 H 0.07 1.50 6.25 -51.93 -0.32 1.18 16 39 H 0.19 3.32 5.15 -52.48 -0.27 3.05 16 40 H 0.10 0.84 6.63 -51.93 -0.34 0.50 16 41 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 42 H 0.08 0.53 6.52 -51.93 -0.34 0.20 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.68 7.89 -51.93 -0.41 0.27 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.34 6.78 -51.92 -0.35 -0.01 16 49 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 400.92 15.07 6.04 6.04 Total: -1.00 -28.91 400.92 -8.18 -37.09 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -7.48 Total: 13.73 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -1.54 Total: 2.55 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.21 Total: -45.72 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.39 Total: -28.11 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -28.91 -8.18 -37.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331625161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.028 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds