Wall clock time and date at job start Tue Mar 31 2020 19:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.46925 * 2 1 4 4 N 1.30839 * 125.89849 * 270.02028 * 3 2 1 5 5 N 1.40086 * 108.20442 * 179.97438 * 4 3 2 6 6 C 1.46504 * 126.03434 * 179.97438 * 5 4 3 7 7 C 1.34943 * 107.92694 * 359.76442 * 5 4 3 8 8 C 1.50701 * 126.12680 * 180.23911 * 7 5 4 9 9 C 1.52997 * 109.47190 * 90.17376 * 8 7 5 10 10 C 1.35314 * 107.74537 * 0.38070 * 7 5 4 11 11 C 1.50706 * 126.04126 * 179.87408 * 10 7 5 12 12 C 1.50698 * 109.47294 * 269.72281 * 11 10 7 13 13 O 1.21282 * 120.00025 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00035 * 180.02562 * 12 11 10 15 15 C 1.47022 * 125.64907 * 0.02562 * 14 12 11 16 16 C 1.54317 * 107.27172 * 181.02546 * 15 14 12 17 17 C 1.55157 * 102.94197 * 22.19350 * 16 15 14 18 18 O 1.42906 * 111.00440 * 82.61221 * 17 16 15 19 19 C 1.50706 * 111.00293 * 206.42134 * 17 16 15 20 20 H 1.07998 * 119.99852 * 118.54921 * 19 17 16 21 21 C 1.37871 * 120.00028 * 298.54685 * 19 17 16 22 22 N 1.31513 * 120.00199 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 119.99937 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47054 * 359.97438 * 23 21 19 25 25 H 1.48489 * 109.47457 * 120.00033 * 23 21 19 26 26 H 1.48505 * 109.47019 * 240.00290 * 23 21 19 27 27 C 1.47426 * 125.64739 * 179.71553 * 14 12 11 28 28 H 1.09004 * 109.46732 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47123 * 300.00277 * 1 2 3 30 30 H 1.09005 * 109.46976 * 60.00554 * 1 2 3 31 31 H 1.08993 * 109.47123 * 239.99723 * 2 1 3 32 32 H 1.09001 * 109.46503 * 119.99562 * 2 1 3 33 33 H 1.08997 * 109.46699 * 90.03030 * 6 5 4 34 34 H 1.08998 * 109.46903 * 210.03185 * 6 5 4 35 35 H 1.09002 * 109.47536 * 330.02904 * 6 5 4 36 36 H 1.09000 * 109.46784 * 210.17358 * 8 7 5 37 37 H 1.08998 * 109.47264 * 330.17034 * 8 7 5 38 38 H 1.09003 * 109.47186 * 179.97438 * 9 8 7 39 39 H 1.09000 * 109.47242 * 299.99701 * 9 8 7 40 40 H 1.08998 * 109.47297 * 59.99678 * 9 8 7 41 41 H 1.09001 * 109.46953 * 29.71724 * 11 10 7 42 42 H 1.09000 * 109.47318 * 149.71321 * 11 10 7 43 43 H 1.09003 * 109.88156 * 300.44417 * 15 14 12 44 44 H 1.08997 * 109.88130 * 61.60606 * 15 14 12 45 45 H 1.08998 * 110.72078 * 140.55833 * 16 15 14 46 46 H 1.09002 * 110.72489 * 263.65266 * 16 15 14 47 47 H 0.96699 * 113.99970 * 61.45357 * 18 17 16 48 48 H 0.96999 * 120.00191 * 179.97438 * 22 21 19 49 49 H 1.08997 * 110.36394 * 274.74234 * 27 14 12 50 50 H 1.08997 * 110.36655 * 37.06158 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2877 2.1442 -1.0599 5 7 2.7321 3.4027 -0.6341 6 6 3.1258 4.5163 -1.5008 7 6 2.7291 3.4096 0.7153 8 6 3.1290 4.5630 1.5988 9 6 1.9020 5.4273 1.8959 10 6 2.3056 2.1942 1.1330 11 6 2.1498 1.7536 2.5658 12 6 3.4376 1.1339 3.0437 13 8 4.3882 1.0570 2.2945 14 7 3.5326 0.6641 4.3034 15 6 2.4626 0.6919 5.3113 16 6 3.0344 0.0723 6.6037 17 6 4.5657 0.2468 6.4248 18 8 4.9799 1.5597 6.8083 19 6 5.3229 -0.8025 7.1974 20 1 5.9606 -1.5013 6.6765 21 6 5.2015 -0.8703 8.5691 22 7 4.4246 -0.0196 9.2033 23 14 6.1406 -2.1705 9.5267 24 1 6.9376 -2.9985 8.5864 25 1 7.0493 -1.5101 10.4979 26 1 5.1808 -3.0369 10.2571 27 6 4.7247 0.0315 4.8968 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.2545 5.1350 -1.7156 34 1 3.8835 5.1175 -0.9983 35 1 3.5323 4.1248 -2.4334 36 1 3.5384 4.1798 2.5335 37 1 3.8831 5.1648 1.0916 38 1 2.1912 6.2613 2.5353 39 1 1.4926 5.8105 0.9612 40 1 1.1479 4.8255 2.4031 41 1 1.9093 2.6164 3.1870 42 1 1.3460 1.0207 2.6352 43 1 2.1557 1.7211 5.4978 44 1 1.6114 0.1062 4.9644 45 1 2.6840 0.6171 7.4804 46 1 2.7696 -0.9826 6.6757 47 1 4.8078 1.7711 7.7361 48 1 4.3389 -0.0675 10.1683 49 1 4.7463 -1.0325 4.6614 50 1 5.6312 0.5188 4.5377 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850248.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:03 Heat of formation + Delta-G solvation = -25.226355 kcal Electronic energy + Delta-G solvation = -30224.983351 eV Core-core repulsion = 26253.268815 eV Total energy + Delta-G solvation = -3971.714536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.43344 -39.25419 -37.15088 -35.15973 -34.21772 -33.94806 -32.22300 -32.01505 -30.85217 -29.60357 -28.39793 -27.69411 -25.98541 -24.79778 -23.67678 -23.30792 -22.15925 -19.99220 -19.47790 -19.24038 -18.48757 -17.17549 -16.62571 -16.44267 -15.57945 -15.24715 -15.03932 -14.92393 -14.61253 -14.40691 -14.12244 -14.10046 -13.71508 -13.51210 -13.17128 -13.13164 -12.95438 -12.59015 -12.55047 -12.18857 -12.11465 -11.96434 -11.80722 -11.68594 -11.55304 -11.36118 -11.30871 -11.27505 -11.15641 -11.05413 -10.89282 -10.60224 -10.45231 -10.29422 -10.01242 -9.39287 -9.27854 -8.98928 -8.68956 -8.21946 -8.13316 -7.90499 -6.28711 -4.36296 1.92594 2.51826 2.77806 3.18574 3.21462 3.27892 3.32690 3.76895 4.27233 4.42652 4.49274 4.79427 4.90432 4.96623 4.97295 5.06627 5.10828 5.18359 5.20812 5.24999 5.32810 5.37689 5.42735 5.57951 5.59120 5.59411 5.71755 5.76395 5.76554 5.83740 5.88390 5.90596 6.01115 6.05149 6.15998 6.20288 6.32980 6.33732 6.47012 6.70168 6.77610 6.92106 7.02541 7.09250 7.30951 7.35570 7.73462 7.83602 8.03341 8.24058 8.66437 8.79554 9.30877 9.39619 10.78615 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.002871 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.492291 B = 9750.102754 C =10363.503033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.045 4.045 3 C 0.096 3.904 4 N -0.301 5.301 5 N -0.376 5.376 6 C 0.105 3.895 7 C 0.102 3.898 8 C -0.064 4.064 9 C -0.144 4.144 10 C -0.207 4.207 11 C -0.056 4.056 12 C 0.522 3.478 13 O -0.547 6.547 14 N -0.610 5.610 15 C 0.099 3.901 16 C -0.136 4.136 17 C 0.248 3.752 18 O -0.582 6.582 19 C -0.534 4.534 20 H 0.064 0.936 21 C 0.073 3.927 22 N -0.895 5.895 23 Si 0.901 3.099 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.283 1.283 27 C 0.121 3.879 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.380 0.620 48 H 0.267 0.733 49 H 0.069 0.931 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.736 8.107 -13.697 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 C -0.070 4.070 4 N -0.123 5.123 5 N -0.158 5.158 6 C -0.037 4.037 7 C -0.025 4.025 8 C -0.103 4.103 9 C -0.202 4.202 10 C -0.219 4.219 11 C -0.097 4.097 12 C 0.310 3.690 13 O -0.425 6.425 14 N -0.343 5.343 15 C -0.024 4.024 16 C -0.175 4.175 17 C 0.207 3.793 18 O -0.391 6.391 19 C -0.572 4.572 20 H 0.083 0.917 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.729 3.271 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.209 1.209 27 C -0.001 4.001 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.229 0.771 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.049 8.343 -16.028 20.209 hybrid contribution 0.314 -0.664 2.092 2.217 sum -8.735 7.680 -13.936 18.152 Atomic orbital electron populations 1.21702 0.94353 1.01848 1.02164 1.19937 0.95823 0.89118 1.03506 1.22029 0.98296 0.96496 0.90191 1.77237 1.21969 0.90617 1.22443 1.48129 1.52403 1.11232 1.03996 1.21753 1.00717 0.86319 0.94882 1.20693 1.00257 0.97179 0.84348 1.20233 0.98420 0.92938 0.98741 1.21720 0.97409 0.99489 1.01595 1.19013 1.14437 0.93734 0.94680 1.19881 0.96279 1.01378 0.92137 1.20233 0.89862 0.78518 0.80413 1.90660 1.39851 1.57710 1.54266 1.48651 1.15702 1.58934 1.11048 1.22173 0.89794 1.00175 0.90260 1.23165 0.99562 1.00524 0.94226 1.19650 0.89353 0.82212 0.88066 1.86138 1.86142 1.33953 1.32824 1.21496 1.28134 1.15475 0.92094 0.91738 1.24978 0.94509 0.95891 0.97604 1.69722 1.37832 1.36667 1.09230 0.86385 0.79724 0.81251 0.79754 1.19589 1.20814 1.20853 1.22366 0.87434 0.96394 0.93861 0.92013 0.92405 0.92653 0.90534 0.89999 0.91144 0.89769 0.89504 0.89003 0.90768 0.91634 0.92944 0.91946 0.88930 0.88734 0.92489 0.92900 0.89607 0.91413 0.77065 0.92337 0.91235 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.90 37.16 0.37 -1.06 16 2 C -0.04 -0.56 6.17 -27.88 -0.17 -0.73 16 3 C 0.10 1.46 6.47 -82.41 -0.53 0.93 16 4 N -0.30 -4.73 12.58 33.67 0.42 -4.30 16 5 N -0.38 -5.12 4.01 -63.88 -0.26 -5.37 16 6 C 0.10 0.92 11.27 59.85 0.67 1.59 16 7 C 0.10 1.43 6.18 -82.27 -0.51 0.92 16 8 C -0.06 -0.72 5.77 -27.88 -0.16 -0.88 16 9 C -0.14 -1.27 9.89 37.16 0.37 -0.90 16 10 C -0.21 -3.14 4.59 -105.05 -0.48 -3.63 16 11 C -0.06 -0.80 4.66 -29.03 -0.14 -0.94 16 12 C 0.52 9.83 7.84 -10.99 -0.09 9.74 16 13 O -0.55 -12.32 16.29 5.56 0.09 -12.23 16 14 N -0.61 -11.87 3.32 -170.39 -0.57 -12.44 16 15 C 0.10 1.72 6.48 -3.07 -0.02 1.70 16 16 C -0.14 -2.83 5.37 -24.90 -0.13 -2.97 16 17 C 0.25 5.86 0.87 -89.50 -0.08 5.78 16 18 O -0.58 -14.49 13.17 -35.23 -0.46 -14.96 16 19 C -0.53 -13.74 8.27 -34.44 -0.28 -14.02 16 20 H 0.06 1.67 7.79 -52.49 -0.41 1.27 16 21 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 22 N -0.90 -22.56 10.76 55.43 0.60 -21.97 16 23 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 C 0.12 2.70 6.10 -2.41 -0.01 2.69 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.06 7.92 -51.93 -0.41 0.65 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.58 7.06 -51.93 -0.37 0.22 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.17 7.77 -51.93 -0.40 0.77 16 37 H 0.07 0.71 7.08 -51.93 -0.37 0.34 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.09 1.18 7.76 -51.93 -0.40 0.78 16 42 H 0.09 1.18 7.92 -51.93 -0.41 0.77 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.09 1.86 7.55 -51.93 -0.39 1.47 16 46 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 47 H 0.38 9.40 7.57 45.56 0.34 9.74 16 48 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 49 H 0.07 1.52 8.03 -51.93 -0.42 1.10 16 50 H 0.07 1.63 8.03 -51.93 -0.42 1.21 16 LS Contribution 406.50 15.07 6.13 6.13 Total: -1.00 -31.58 406.50 -8.22 -39.80 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -7.86 Total: 10.41 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -1.29 Total: -0.03 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.20 Total: -44.08 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.37 Total: -27.18 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.58 -8.22 -39.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850248.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.572 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds