Wall clock time and date at job start Tue Mar 31 2020 19:36:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.50698 * 109.46925 * 2 1
4 4 N 1.30839 * 125.89849 * 270.02028 * 3 2 1
5 5 N 1.40086 * 108.20442 * 179.97438 * 4 3 2
6 6 C 1.46504 * 126.03434 * 179.97438 * 5 4 3
7 7 C 1.34943 * 107.92694 * 359.76442 * 5 4 3
8 8 C 1.50701 * 126.12680 * 180.23911 * 7 5 4
9 9 C 1.52997 * 109.47190 * 90.17376 * 8 7 5
10 10 C 1.35314 * 107.74537 * 0.38070 * 7 5 4
11 11 C 1.50706 * 126.04126 * 179.87408 * 10 7 5
12 12 C 1.50698 * 109.47294 * 269.72281 * 11 10 7
13 13 O 1.21282 * 120.00025 * 359.97438 * 12 11 10
14 14 N 1.34776 * 120.00035 * 180.02562 * 12 11 10
15 15 C 1.47022 * 125.64907 * 0.02562 * 14 12 11
16 16 C 1.54317 * 107.27172 * 181.02546 * 15 14 12
17 17 C 1.55157 * 102.94197 * 22.19350 * 16 15 14
18 18 O 1.42906 * 111.00440 * 82.61221 * 17 16 15
19 19 C 1.50706 * 111.00293 * 206.42134 * 17 16 15
20 20 H 1.07998 * 119.99852 * 118.54921 * 19 17 16
21 21 C 1.37871 * 120.00028 * 298.54685 * 19 17 16
22 22 N 1.31513 * 120.00199 * 0.02562 * 21 19 17
23 23 Si 1.86803 * 119.99937 * 180.02562 * 21 19 17
24 24 H 1.48501 * 109.47054 * 359.97438 * 23 21 19
25 25 H 1.48489 * 109.47457 * 120.00033 * 23 21 19
26 26 H 1.48505 * 109.47019 * 240.00290 * 23 21 19
27 27 C 1.47426 * 125.64739 * 179.71553 * 14 12 11
28 28 H 1.09004 * 109.46732 * 180.02562 * 1 2 3
29 29 H 1.08993 * 109.47123 * 300.00277 * 1 2 3
30 30 H 1.09005 * 109.46976 * 60.00554 * 1 2 3
31 31 H 1.08993 * 109.47123 * 239.99723 * 2 1 3
32 32 H 1.09001 * 109.46503 * 119.99562 * 2 1 3
33 33 H 1.08997 * 109.46699 * 90.03030 * 6 5 4
34 34 H 1.08998 * 109.46903 * 210.03185 * 6 5 4
35 35 H 1.09002 * 109.47536 * 330.02904 * 6 5 4
36 36 H 1.09000 * 109.46784 * 210.17358 * 8 7 5
37 37 H 1.08998 * 109.47264 * 330.17034 * 8 7 5
38 38 H 1.09003 * 109.47186 * 179.97438 * 9 8 7
39 39 H 1.09000 * 109.47242 * 299.99701 * 9 8 7
40 40 H 1.08998 * 109.47297 * 59.99678 * 9 8 7
41 41 H 1.09001 * 109.46953 * 29.71724 * 11 10 7
42 42 H 1.09000 * 109.47318 * 149.71321 * 11 10 7
43 43 H 1.09003 * 109.88156 * 300.44417 * 15 14 12
44 44 H 1.08997 * 109.88130 * 61.60606 * 15 14 12
45 45 H 1.08998 * 110.72078 * 140.55833 * 16 15 14
46 46 H 1.09002 * 110.72489 * 263.65266 * 16 15 14
47 47 H 0.96699 * 113.99970 * 61.45357 * 18 17 16
48 48 H 0.96999 * 120.00191 * 179.97438 * 22 21 19
49 49 H 1.08997 * 110.36394 * 274.74234 * 27 14 12
50 50 H 1.08997 * 110.36655 * 37.06158 * 27 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2877 2.1442 -1.0599
5 7 2.7321 3.4027 -0.6341
6 6 3.1258 4.5163 -1.5008
7 6 2.7291 3.4096 0.7153
8 6 3.1290 4.5630 1.5988
9 6 1.9020 5.4273 1.8959
10 6 2.3056 2.1942 1.1330
11 6 2.1498 1.7536 2.5658
12 6 3.4376 1.1339 3.0437
13 8 4.3882 1.0570 2.2945
14 7 3.5326 0.6641 4.3034
15 6 2.4626 0.6919 5.3113
16 6 3.0344 0.0723 6.6037
17 6 4.5657 0.2468 6.4248
18 8 4.9799 1.5597 6.8083
19 6 5.3229 -0.8025 7.1974
20 1 5.9606 -1.5013 6.6765
21 6 5.2015 -0.8703 8.5691
22 7 4.4246 -0.0196 9.2033
23 14 6.1406 -2.1705 9.5267
24 1 6.9376 -2.9985 8.5864
25 1 7.0493 -1.5101 10.4979
26 1 5.1808 -3.0369 10.2571
27 6 4.7247 0.0315 4.8968
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8899
30 1 -0.3633 0.5138 -0.8901
31 1 1.8934 -0.5138 -0.8899
32 1 1.8933 -0.5138 0.8901
33 1 2.2545 5.1350 -1.7156
34 1 3.8835 5.1175 -0.9983
35 1 3.5323 4.1248 -2.4334
36 1 3.5384 4.1798 2.5335
37 1 3.8831 5.1648 1.0916
38 1 2.1912 6.2613 2.5353
39 1 1.4926 5.8105 0.9612
40 1 1.1479 4.8255 2.4031
41 1 1.9093 2.6164 3.1870
42 1 1.3460 1.0207 2.6352
43 1 2.1557 1.7211 5.4978
44 1 1.6114 0.1062 4.9644
45 1 2.6840 0.6171 7.4804
46 1 2.7696 -0.9826 6.6757
47 1 4.8078 1.7711 7.7361
48 1 4.3389 -0.0675 10.1683
49 1 4.7463 -1.0325 4.6614
50 1 5.6312 0.5188 4.5377
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000592850248.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:36:02
Heat of formation + Delta-G solvation = -45.619283 kcal
Electronic energy + Delta-G solvation = -30225.867655 eV
Core-core repulsion = 26253.268815 eV
Total energy + Delta-G solvation = -3972.598840 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-42.47203 -40.81716 -38.84171 -36.09189 -35.98416 -34.90761 -34.18705 -32.94096
-32.02902 -31.09490 -29.97771 -28.79644 -27.25375 -26.29162 -24.55488 -24.30628
-23.63161 -21.62857 -20.81106 -20.23289 -19.85935 -19.05128 -18.07415 -17.50639
-16.91302 -16.75023 -16.49086 -16.41815 -15.83013 -15.65083 -15.37687 -15.15575
-14.96531 -14.76707 -14.44374 -14.10503 -13.95792 -13.85601 -13.71963 -13.48952
-13.38724 -13.23472 -13.21215 -12.99112 -12.89454 -12.75852 -12.61307 -12.46505
-12.41973 -12.23644 -12.18826 -12.01044 -11.94654 -11.79096 -11.33591 -11.22268
-10.86200 -10.60836 -10.10742 -10.00016 -9.48497 -9.21121 -8.21647 -6.35847
0.89879 1.41547 1.46364 1.55618 1.60350 1.67716 1.75585 2.29071
2.43921 3.03416 3.51994 3.58269 3.72219 3.92026 3.96534 4.07900
4.10247 4.18326 4.23701 4.29148 4.32745 4.40646 4.44069 4.48054
4.49943 4.58725 4.61153 4.64999 4.67792 4.74297 4.81084 4.83396
4.94875 4.96651 5.04186 5.06469 5.18906 5.24091 5.31670 5.34989
5.35367 5.38298 5.50255 5.59744 5.74353 5.80990 6.12876 6.16122
6.66699 6.75140 6.78502 7.29573 7.34705 7.43891 8.84075
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.018459 B = 0.002871 C = 0.002701
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1516.492291 B = 9750.102754 C =10363.503033
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.046 4.046
3 C 0.083 3.917
4 N -0.332 5.332
5 N -0.379 5.379
6 C 0.094 3.906
7 C 0.100 3.900
8 C -0.063 4.063
9 C -0.137 4.137
10 C -0.236 4.236
11 C -0.041 4.041
12 C 0.520 3.480
13 O -0.590 6.590
14 N -0.612 5.612
15 C 0.105 3.895
16 C -0.126 4.126
17 C 0.235 3.765
18 O -0.592 6.592
19 C -0.562 4.562
20 H 0.050 0.950
21 C 0.039 3.961
22 N -0.903 5.903
23 Si 0.956 3.044
24 H -0.277 1.277
25 H -0.281 1.281
26 H -0.274 1.274
27 C 0.127 3.873
28 H 0.079 0.921
29 H 0.062 0.938
30 H 0.050 0.950
31 H 0.073 0.927
32 H 0.075 0.925
33 H 0.092 0.908
34 H 0.103 0.897
35 H 0.089 0.911
36 H 0.073 0.927
37 H 0.089 0.911
38 H 0.080 0.920
39 H 0.061 0.939
40 H 0.059 0.941
41 H 0.113 0.887
42 H 0.119 0.881
43 H 0.077 0.923
44 H 0.091 0.909
45 H 0.076 0.924
46 H 0.061 0.939
47 H 0.377 0.623
48 H 0.271 0.729
49 H 0.067 0.933
50 H 0.039 0.961
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.558 9.001 -13.679 20.043
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.085 4.085
3 C -0.083 4.083
4 N -0.154 5.154
5 N -0.160 5.160
6 C -0.046 4.046
7 C -0.028 4.028
8 C -0.102 4.102
9 C -0.195 4.195
10 C -0.248 4.248
11 C -0.082 4.082
12 C 0.311 3.689
13 O -0.471 6.471
14 N -0.345 5.345
15 C -0.017 4.017
16 C -0.165 4.165
17 C 0.195 3.805
18 O -0.400 6.400
19 C -0.600 4.600
20 H 0.068 0.932
21 C -0.162 4.162
22 N -0.542 5.542
23 Si 0.782 3.218
24 H -0.201 1.201
25 H -0.207 1.207
26 H -0.200 1.200
27 C 0.003 3.997
28 H 0.098 0.902
29 H 0.082 0.918
30 H 0.070 0.930
31 H 0.091 0.909
32 H 0.093 0.907
33 H 0.111 0.889
34 H 0.121 0.879
35 H 0.108 0.892
36 H 0.091 0.909
37 H 0.107 0.893
38 H 0.099 0.901
39 H 0.080 0.920
40 H 0.078 0.922
41 H 0.131 0.869
42 H 0.137 0.863
43 H 0.095 0.905
44 H 0.109 0.891
45 H 0.095 0.905
46 H 0.079 0.921
47 H 0.227 0.773
48 H 0.080 0.920
49 H 0.085 0.915
50 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges -10.901 9.251 -16.018 21.471
hybrid contribution 0.972 -0.892 2.049 2.437
sum -9.930 8.358 -13.970 19.069
Atomic orbital electron populations
1.21645 0.92239 1.03047 1.02214 1.20008 0.97610 0.87910 1.02965
1.22430 0.98195 0.97393 0.90277 1.77164 1.23214 0.91838 1.23192
1.48513 1.51564 1.11431 1.04486 1.22127 1.02303 0.85531 0.94669
1.21156 0.99048 0.97705 0.84898 1.20306 0.99913 0.92542 0.97424
1.21682 0.96091 0.99353 1.02360 1.19230 1.16118 0.94526 0.94917
1.19855 0.93954 1.02296 0.92065 1.21084 0.90905 0.77494 0.79455
1.90636 1.41838 1.59334 1.55324 1.48720 1.15123 1.58846 1.11775
1.22245 0.89713 1.01781 0.87958 1.22944 0.97376 1.00307 0.95862
1.19786 0.91183 0.81136 0.88383 1.86125 1.86583 1.34682 1.32610
1.21693 1.29038 1.16269 0.92984 0.93170 1.25544 0.95150 0.97466
0.98081 1.69772 1.37865 1.37059 1.09535 0.85539 0.78661 0.79228
0.78337 1.20145 1.20663 1.19961 1.22104 0.87886 0.96211 0.93450
0.90215 0.91848 0.93036 0.90869 0.90686 0.88933 0.87867 0.89212
0.90870 0.89281 0.90129 0.92006 0.92213 0.86855 0.86336 0.90485
0.89129 0.90527 0.92063 0.77339 0.91987 0.91476 0.94214
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.45 9.90 71.98 0.71 -1.74 16
2 C -0.05 -1.12 6.17 29.85 0.18 -0.94 16
3 C 0.08 2.48 6.47 43.10 0.28 2.75 16
4 N -0.33 -10.29 12.58 -47.38 -0.60 -10.89 16
5 N -0.38 -9.88 4.01 -356.03 -1.43 -11.31 16
6 C 0.09 1.47 11.27 127.77 1.44 2.91 16
7 C 0.10 2.67 6.18 41.41 0.26 2.93 16
8 C -0.06 -1.29 5.77 29.85 0.17 -1.12 16
9 C -0.14 -2.04 9.89 71.98 0.71 -1.32 16
10 C -0.24 -6.92 4.59 -20.14 -0.09 -7.02 16
11 C -0.04 -1.11 4.66 29.10 0.14 -0.98 16
12 C 0.52 19.29 7.84 87.66 0.69 19.98 16
13 O -0.59 -27.09 16.29 -3.04 -0.05 -27.14 16
14 N -0.61 -23.37 3.32 -811.37 -2.70 -26.07 16
15 C 0.10 3.39 6.48 86.73 0.56 3.95 16
16 C -0.13 -5.15 5.37 31.78 0.17 -4.98 16
17 C 0.24 11.25 0.87 -10.07 -0.01 11.24 16
18 O -0.59 -29.83 13.17 -148.98 -1.96 -31.79 16
19 C -0.56 -29.40 8.27 25.60 0.21 -29.19 16
20 H 0.05 2.69 7.79 -2.91 -0.02 2.67 16
21 C 0.04 1.98 5.29 84.65 0.45 2.43 16
22 N -0.90 -45.17 10.76 21.44 0.23 -44.94 16
23 Si 0.96 40.90 29.54 68.60 2.03 42.93 16
24 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16
25 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16
26 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16
27 C 0.13 5.78 6.10 86.93 0.53 6.31 16
28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16
29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16
30 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16
31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16
32 H 0.07 1.91 7.92 -2.39 -0.02 1.90 16
33 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16
34 H 0.10 1.20 7.06 -2.39 -0.02 1.18 16
35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16
36 H 0.07 1.80 7.77 -2.39 -0.02 1.78 16
37 H 0.09 1.53 7.08 -2.39 -0.02 1.51 16
38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16
40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16
41 H 0.11 2.58 7.76 -2.39 -0.02 2.56 16
42 H 0.12 2.60 7.92 -2.39 -0.02 2.58 16
43 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16
44 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16
45 H 0.08 3.26 7.55 -2.39 -0.02 3.24 16
46 H 0.06 2.54 8.04 -2.39 -0.02 2.52 16
47 H 0.38 18.89 7.57 -74.06 -0.56 18.33 16
48 H 0.27 12.86 8.31 -92.71 -0.77 12.09 16
49 H 0.07 3.03 8.03 -2.39 -0.02 3.01 16
50 H 0.04 1.99 8.03 -2.39 -0.02 1.97 16
Total: -1.00 -69.54 406.50 2.29 -67.25
By element:
Atomic # 1 Polarization: 36.36 SS G_CDS: 0.37 Total: 36.73 kcal
Atomic # 6 Polarization: -1.17 SS G_CDS: 6.40 Total: 5.23 kcal
Atomic # 7 Polarization: -88.70 SS G_CDS: -4.49 Total: -93.19 kcal
Atomic # 8 Polarization: -56.92 SS G_CDS: -2.01 Total: -58.93 kcal
Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal
Total: -69.54 2.29 -67.25 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592850248.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.626 kcal
(2) G-P(sol) polarization free energy of solvation -69.538 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.912 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.245 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.619 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds