Wall clock time and date at job start Tue Mar 31 2020 19:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.46925 * 2 1 4 4 N 1.30839 * 125.89849 * 270.02028 * 3 2 1 5 5 N 1.40086 * 108.20442 * 179.97438 * 4 3 2 6 6 C 1.46504 * 126.03434 * 179.97438 * 5 4 3 7 7 C 1.34943 * 107.92694 * 359.76442 * 5 4 3 8 8 C 1.50701 * 126.12680 * 180.23911 * 7 5 4 9 9 C 1.52997 * 109.47190 * 90.17376 * 8 7 5 10 10 C 1.35314 * 107.74537 * 0.38070 * 7 5 4 11 11 C 1.50706 * 126.04126 * 179.87408 * 10 7 5 12 12 C 1.50698 * 109.47294 * 269.72281 * 11 10 7 13 13 O 1.21282 * 120.00025 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00035 * 180.02562 * 12 11 10 15 15 C 1.47022 * 125.64907 * 0.02562 * 14 12 11 16 16 C 1.54317 * 107.27172 * 181.02546 * 15 14 12 17 17 C 1.55157 * 102.94197 * 22.19350 * 16 15 14 18 18 O 1.42906 * 111.00440 * 82.61221 * 17 16 15 19 19 C 1.50706 * 111.00293 * 206.42134 * 17 16 15 20 20 H 1.07998 * 119.99852 * 118.54921 * 19 17 16 21 21 C 1.37871 * 120.00028 * 298.54685 * 19 17 16 22 22 N 1.31513 * 120.00199 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 119.99937 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47054 * 359.97438 * 23 21 19 25 25 H 1.48489 * 109.47457 * 120.00033 * 23 21 19 26 26 H 1.48505 * 109.47019 * 240.00290 * 23 21 19 27 27 C 1.47426 * 125.64739 * 179.71553 * 14 12 11 28 28 H 1.09004 * 109.46732 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47123 * 300.00277 * 1 2 3 30 30 H 1.09005 * 109.46976 * 60.00554 * 1 2 3 31 31 H 1.08993 * 109.47123 * 239.99723 * 2 1 3 32 32 H 1.09001 * 109.46503 * 119.99562 * 2 1 3 33 33 H 1.08997 * 109.46699 * 90.03030 * 6 5 4 34 34 H 1.08998 * 109.46903 * 210.03185 * 6 5 4 35 35 H 1.09002 * 109.47536 * 330.02904 * 6 5 4 36 36 H 1.09000 * 109.46784 * 210.17358 * 8 7 5 37 37 H 1.08998 * 109.47264 * 330.17034 * 8 7 5 38 38 H 1.09003 * 109.47186 * 179.97438 * 9 8 7 39 39 H 1.09000 * 109.47242 * 299.99701 * 9 8 7 40 40 H 1.08998 * 109.47297 * 59.99678 * 9 8 7 41 41 H 1.09001 * 109.46953 * 29.71724 * 11 10 7 42 42 H 1.09000 * 109.47318 * 149.71321 * 11 10 7 43 43 H 1.09003 * 109.88156 * 300.44417 * 15 14 12 44 44 H 1.08997 * 109.88130 * 61.60606 * 15 14 12 45 45 H 1.08998 * 110.72078 * 140.55833 * 16 15 14 46 46 H 1.09002 * 110.72489 * 263.65266 * 16 15 14 47 47 H 0.96699 * 113.99970 * 61.45357 * 18 17 16 48 48 H 0.96999 * 120.00191 * 179.97438 * 22 21 19 49 49 H 1.08997 * 110.36394 * 274.74234 * 27 14 12 50 50 H 1.08997 * 110.36655 * 37.06158 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2877 2.1442 -1.0599 5 7 2.7321 3.4027 -0.6341 6 6 3.1258 4.5163 -1.5008 7 6 2.7291 3.4096 0.7153 8 6 3.1290 4.5630 1.5988 9 6 1.9020 5.4273 1.8959 10 6 2.3056 2.1942 1.1330 11 6 2.1498 1.7536 2.5658 12 6 3.4376 1.1339 3.0437 13 8 4.3882 1.0570 2.2945 14 7 3.5326 0.6641 4.3034 15 6 2.4626 0.6919 5.3113 16 6 3.0344 0.0723 6.6037 17 6 4.5657 0.2468 6.4248 18 8 4.9799 1.5597 6.8083 19 6 5.3229 -0.8025 7.1974 20 1 5.9606 -1.5013 6.6765 21 6 5.2015 -0.8703 8.5691 22 7 4.4246 -0.0196 9.2033 23 14 6.1406 -2.1705 9.5267 24 1 6.9376 -2.9985 8.5864 25 1 7.0493 -1.5101 10.4979 26 1 5.1808 -3.0369 10.2571 27 6 4.7247 0.0315 4.8968 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.2545 5.1350 -1.7156 34 1 3.8835 5.1175 -0.9983 35 1 3.5323 4.1248 -2.4334 36 1 3.5384 4.1798 2.5335 37 1 3.8831 5.1648 1.0916 38 1 2.1912 6.2613 2.5353 39 1 1.4926 5.8105 0.9612 40 1 1.1479 4.8255 2.4031 41 1 1.9093 2.6164 3.1870 42 1 1.3460 1.0207 2.6352 43 1 2.1557 1.7211 5.4978 44 1 1.6114 0.1062 4.9644 45 1 2.6840 0.6171 7.4804 46 1 2.7696 -0.9826 6.6757 47 1 4.8078 1.7711 7.7361 48 1 4.3389 -0.0675 10.1683 49 1 4.7463 -1.0325 4.6614 50 1 5.6312 0.5188 4.5377 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850248.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:02 Heat of formation + Delta-G solvation = -45.619283 kcal Electronic energy + Delta-G solvation = -30225.867655 eV Core-core repulsion = 26253.268815 eV Total energy + Delta-G solvation = -3972.598840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.47203 -40.81716 -38.84171 -36.09189 -35.98416 -34.90761 -34.18705 -32.94096 -32.02902 -31.09490 -29.97771 -28.79644 -27.25375 -26.29162 -24.55488 -24.30628 -23.63161 -21.62857 -20.81106 -20.23289 -19.85935 -19.05128 -18.07415 -17.50639 -16.91302 -16.75023 -16.49086 -16.41815 -15.83013 -15.65083 -15.37687 -15.15575 -14.96531 -14.76707 -14.44374 -14.10503 -13.95792 -13.85601 -13.71963 -13.48952 -13.38724 -13.23472 -13.21215 -12.99112 -12.89454 -12.75852 -12.61307 -12.46505 -12.41973 -12.23644 -12.18826 -12.01044 -11.94654 -11.79096 -11.33591 -11.22268 -10.86200 -10.60836 -10.10742 -10.00016 -9.48497 -9.21121 -8.21647 -6.35847 0.89879 1.41547 1.46364 1.55618 1.60350 1.67716 1.75585 2.29071 2.43921 3.03416 3.51994 3.58269 3.72219 3.92026 3.96534 4.07900 4.10247 4.18326 4.23701 4.29148 4.32745 4.40646 4.44069 4.48054 4.49943 4.58725 4.61153 4.64999 4.67792 4.74297 4.81084 4.83396 4.94875 4.96651 5.04186 5.06469 5.18906 5.24091 5.31670 5.34989 5.35367 5.38298 5.50255 5.59744 5.74353 5.80990 6.12876 6.16122 6.66699 6.75140 6.78502 7.29573 7.34705 7.43891 8.84075 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.002871 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.492291 B = 9750.102754 C =10363.503033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.046 4.046 3 C 0.083 3.917 4 N -0.332 5.332 5 N -0.379 5.379 6 C 0.094 3.906 7 C 0.100 3.900 8 C -0.063 4.063 9 C -0.137 4.137 10 C -0.236 4.236 11 C -0.041 4.041 12 C 0.520 3.480 13 O -0.590 6.590 14 N -0.612 5.612 15 C 0.105 3.895 16 C -0.126 4.126 17 C 0.235 3.765 18 O -0.592 6.592 19 C -0.562 4.562 20 H 0.050 0.950 21 C 0.039 3.961 22 N -0.903 5.903 23 Si 0.956 3.044 24 H -0.277 1.277 25 H -0.281 1.281 26 H -0.274 1.274 27 C 0.127 3.873 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.377 0.623 48 H 0.271 0.729 49 H 0.067 0.933 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.558 9.001 -13.679 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.085 4.085 3 C -0.083 4.083 4 N -0.154 5.154 5 N -0.160 5.160 6 C -0.046 4.046 7 C -0.028 4.028 8 C -0.102 4.102 9 C -0.195 4.195 10 C -0.248 4.248 11 C -0.082 4.082 12 C 0.311 3.689 13 O -0.471 6.471 14 N -0.345 5.345 15 C -0.017 4.017 16 C -0.165 4.165 17 C 0.195 3.805 18 O -0.400 6.400 19 C -0.600 4.600 20 H 0.068 0.932 21 C -0.162 4.162 22 N -0.542 5.542 23 Si 0.782 3.218 24 H -0.201 1.201 25 H -0.207 1.207 26 H -0.200 1.200 27 C 0.003 3.997 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.227 0.773 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.901 9.251 -16.018 21.471 hybrid contribution 0.972 -0.892 2.049 2.437 sum -9.930 8.358 -13.970 19.069 Atomic orbital electron populations 1.21645 0.92239 1.03047 1.02214 1.20008 0.97610 0.87910 1.02965 1.22430 0.98195 0.97393 0.90277 1.77164 1.23214 0.91838 1.23192 1.48513 1.51564 1.11431 1.04486 1.22127 1.02303 0.85531 0.94669 1.21156 0.99048 0.97705 0.84898 1.20306 0.99913 0.92542 0.97424 1.21682 0.96091 0.99353 1.02360 1.19230 1.16118 0.94526 0.94917 1.19855 0.93954 1.02296 0.92065 1.21084 0.90905 0.77494 0.79455 1.90636 1.41838 1.59334 1.55324 1.48720 1.15123 1.58846 1.11775 1.22245 0.89713 1.01781 0.87958 1.22944 0.97376 1.00307 0.95862 1.19786 0.91183 0.81136 0.88383 1.86125 1.86583 1.34682 1.32610 1.21693 1.29038 1.16269 0.92984 0.93170 1.25544 0.95150 0.97466 0.98081 1.69772 1.37865 1.37059 1.09535 0.85539 0.78661 0.79228 0.78337 1.20145 1.20663 1.19961 1.22104 0.87886 0.96211 0.93450 0.90215 0.91848 0.93036 0.90869 0.90686 0.88933 0.87867 0.89212 0.90870 0.89281 0.90129 0.92006 0.92213 0.86855 0.86336 0.90485 0.89129 0.90527 0.92063 0.77339 0.91987 0.91476 0.94214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.90 71.98 0.71 -1.74 16 2 C -0.05 -1.12 6.17 29.85 0.18 -0.94 16 3 C 0.08 2.48 6.47 43.10 0.28 2.75 16 4 N -0.33 -10.29 12.58 -47.38 -0.60 -10.89 16 5 N -0.38 -9.88 4.01 -356.03 -1.43 -11.31 16 6 C 0.09 1.47 11.27 127.77 1.44 2.91 16 7 C 0.10 2.67 6.18 41.41 0.26 2.93 16 8 C -0.06 -1.29 5.77 29.85 0.17 -1.12 16 9 C -0.14 -2.04 9.89 71.98 0.71 -1.32 16 10 C -0.24 -6.92 4.59 -20.14 -0.09 -7.02 16 11 C -0.04 -1.11 4.66 29.10 0.14 -0.98 16 12 C 0.52 19.29 7.84 87.66 0.69 19.98 16 13 O -0.59 -27.09 16.29 -3.04 -0.05 -27.14 16 14 N -0.61 -23.37 3.32 -811.37 -2.70 -26.07 16 15 C 0.10 3.39 6.48 86.73 0.56 3.95 16 16 C -0.13 -5.15 5.37 31.78 0.17 -4.98 16 17 C 0.24 11.25 0.87 -10.07 -0.01 11.24 16 18 O -0.59 -29.83 13.17 -148.98 -1.96 -31.79 16 19 C -0.56 -29.40 8.27 25.60 0.21 -29.19 16 20 H 0.05 2.69 7.79 -2.91 -0.02 2.67 16 21 C 0.04 1.98 5.29 84.65 0.45 2.43 16 22 N -0.90 -45.17 10.76 21.44 0.23 -44.94 16 23 Si 0.96 40.90 29.54 68.60 2.03 42.93 16 24 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 27 C 0.13 5.78 6.10 86.93 0.53 6.31 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.07 1.91 7.92 -2.39 -0.02 1.90 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.10 1.20 7.06 -2.39 -0.02 1.18 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.80 7.77 -2.39 -0.02 1.78 16 37 H 0.09 1.53 7.08 -2.39 -0.02 1.51 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.11 2.58 7.76 -2.39 -0.02 2.56 16 42 H 0.12 2.60 7.92 -2.39 -0.02 2.58 16 43 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.08 3.26 7.55 -2.39 -0.02 3.24 16 46 H 0.06 2.54 8.04 -2.39 -0.02 2.52 16 47 H 0.38 18.89 7.57 -74.06 -0.56 18.33 16 48 H 0.27 12.86 8.31 -92.71 -0.77 12.09 16 49 H 0.07 3.03 8.03 -2.39 -0.02 3.01 16 50 H 0.04 1.99 8.03 -2.39 -0.02 1.97 16 Total: -1.00 -69.54 406.50 2.29 -67.25 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: 0.37 Total: 36.73 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 6.40 Total: 5.23 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -4.49 Total: -93.19 kcal Atomic # 8 Polarization: -56.92 SS G_CDS: -2.01 Total: -58.93 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -69.54 2.29 -67.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850248.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.626 kcal (2) G-P(sol) polarization free energy of solvation -69.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds