Wall clock time and date at job start Tue Mar 31 2020 19:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50707 * 109.46760 * 2 1 4 4 C 1.38354 * 120.27053 * 270.02256 * 3 2 1 5 5 N 1.31887 * 121.18588 * 179.70255 * 4 3 2 6 6 C 1.32233 * 121.79472 * 0.56430 * 5 4 3 7 7 O 1.35431 * 119.79758 * 179.71074 * 6 5 4 8 8 C 1.40281 * 120.40548 * 359.43956 * 6 5 4 9 9 C 1.47524 * 120.60117 * 180.25450 * 8 6 5 10 10 O 1.21593 * 119.99359 * 303.94752 * 9 8 6 11 11 N 1.34773 * 120.00476 * 123.94276 * 9 8 6 12 12 C 1.46505 * 119.99875 * 4.31456 * 11 9 8 13 13 C 1.50695 * 109.47235 * 95.53230 * 12 11 9 14 14 H 1.08001 * 120.00158 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99862 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99943 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00014 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47128 * 89.99743 * 17 15 13 19 19 H 1.48500 * 109.47216 * 209.99499 * 17 15 13 20 20 H 1.48501 * 109.47333 * 329.99893 * 17 15 13 21 21 C 1.46494 * 120.00227 * 184.30465 * 11 9 8 22 22 C 1.53002 * 109.46947 * 90.00662 * 21 11 9 23 23 C 1.52999 * 109.47440 * 180.02562 * 22 21 11 24 24 N 1.46899 * 109.47181 * 180.02562 * 23 22 21 25 25 C 1.46900 * 111.00407 * 66.04309 * 24 23 22 26 26 C 1.46899 * 110.99988 * 189.99996 * 24 23 22 27 27 C 1.38340 * 120.26920 * 89.99819 * 3 2 1 28 28 H 1.08993 * 109.47391 * 299.99871 * 1 2 3 29 29 H 1.08995 * 109.47078 * 60.00594 * 1 2 3 30 30 H 1.09003 * 109.46582 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47391 * 240.00129 * 2 1 3 32 32 H 1.08995 * 109.47078 * 119.99406 * 2 1 3 33 33 H 1.07998 * 119.40822 * 359.97423 * 4 3 2 34 34 H 0.96702 * 113.99967 * 269.72616 * 7 6 5 35 35 H 1.09000 * 109.46788 * 215.53845 * 12 11 9 36 36 H 1.09001 * 109.46867 * 335.53756 * 12 11 9 37 37 H 0.97000 * 119.99696 * 180.02562 * 16 15 13 38 38 H 1.08995 * 109.47436 * 210.00332 * 21 11 9 39 39 H 1.08998 * 109.47553 * 330.01135 * 21 11 9 40 40 H 1.09011 * 109.47141 * 300.00290 * 22 21 11 41 41 H 1.09000 * 109.47328 * 59.99737 * 22 21 11 42 42 H 1.09002 * 109.46631 * 299.99708 * 23 22 21 43 43 H 1.09000 * 109.47239 * 59.99481 * 23 22 21 44 44 H 1.09001 * 109.47090 * 59.99688 * 25 24 23 45 45 H 1.08997 * 109.47504 * 179.97438 * 25 24 23 46 46 H 1.09002 * 109.46802 * 300.00502 * 25 24 23 47 47 H 1.08997 * 109.47307 * 59.99377 * 26 24 23 48 48 H 1.08993 * 109.47296 * 179.97438 * 26 24 23 49 49 H 1.09003 * 109.47039 * 300.00024 * 26 24 23 50 50 H 1.08002 * 120.82668 * 0.04009 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2643 2.0786 -1.1949 5 7 2.6983 3.3239 -1.2160 6 6 2.9415 3.9958 -0.1034 7 8 3.3919 5.2712 -0.1722 8 6 2.7305 3.3976 1.1478 9 6 2.9952 4.1452 2.3918 10 8 4.0930 4.6297 2.5880 11 7 2.0202 4.2912 3.3107 12 6 0.7276 3.6286 3.1189 13 6 0.7202 2.3175 3.8616 14 1 1.5909 2.0087 4.4210 15 6 -0.3987 1.5125 3.8279 16 7 -0.4051 0.3679 4.4757 17 14 -1.9050 2.0469 2.8611 18 1 -1.8042 1.5413 1.4684 19 1 -3.1258 1.4943 3.5011 20 1 -1.9825 3.5298 2.8449 21 6 2.2528 5.1122 4.5015 22 6 1.8438 6.5578 4.2120 23 6 2.0874 7.4155 5.4554 24 7 1.6941 8.8034 5.1776 25 6 0.2449 8.9065 4.9603 26 6 2.1297 9.7000 6.2566 27 6 2.2647 2.0784 1.1948 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 2.0827 1.5645 -2.1272 34 1 4.3557 5.3474 -0.1923 35 1 -0.0684 4.2675 3.5014 36 1 0.5676 3.4452 2.0565 37 1 -1.1922 -0.1986 4.4517 38 1 1.6600 4.7260 5.3306 39 1 3.3101 5.0795 4.7645 40 1 2.4367 6.9441 3.3828 41 1 0.7866 6.5906 3.9490 42 1 1.4948 7.0294 6.2848 43 1 3.1448 7.3827 5.7180 44 1 -0.2814 8.5659 5.8520 45 1 -0.0191 9.9444 4.7572 46 1 -0.0401 8.2858 4.1108 47 1 3.2148 9.6561 6.3497 48 1 1.8262 10.7210 6.0254 49 1 1.6718 9.3881 7.1953 50 1 2.0913 1.5860 2.1403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596925217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:35 Heat of formation + Delta-G solvation = -39.717324 kcal Electronic energy + Delta-G solvation = -30449.165475 eV Core-core repulsion = 26476.822563 eV Total energy + Delta-G solvation = -3972.342912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.56710 -38.82301 -37.58811 -37.08172 -35.31346 -33.93695 -33.08793 -32.29077 -31.09015 -28.81204 -28.14030 -27.62182 -26.22581 -24.24513 -23.67428 -22.74775 -22.58831 -21.27384 -20.65885 -18.83934 -18.33801 -17.20903 -16.83072 -16.60392 -15.90163 -15.65785 -15.44942 -15.07693 -14.91016 -14.55450 -14.40787 -13.90251 -13.77285 -13.70274 -13.36829 -13.07975 -12.85065 -12.79121 -12.45749 -12.43616 -12.18826 -12.04892 -11.84923 -11.70965 -11.69637 -11.59248 -11.36541 -11.23514 -11.16552 -10.97915 -10.92930 -10.41580 -10.29909 -10.22482 -9.80027 -9.63062 -9.32804 -8.95194 -8.81785 -8.45222 -8.37678 -7.86760 -6.35586 -4.37570 1.06388 1.50691 3.06456 3.16277 3.17879 3.20609 3.58942 3.77749 3.99041 4.12235 4.15082 4.86560 4.93047 5.00324 5.03391 5.06336 5.11457 5.23640 5.33299 5.37134 5.38101 5.50784 5.60547 5.61138 5.63371 5.66420 5.72944 5.76219 5.81220 5.86148 5.94491 5.95279 6.10171 6.11283 6.28828 6.31668 6.42764 6.44017 6.54638 6.57737 6.62558 6.67572 6.84995 7.00346 7.02888 7.21793 7.32550 7.72538 7.96085 8.10453 8.27760 8.66271 8.76113 9.23816 10.75634 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010127 B = 0.004510 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.242194 B = 6206.279094 C = 7992.749211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.072 4.072 3 C -0.152 4.152 4 C 0.130 3.870 5 N -0.510 5.510 6 C 0.337 3.663 7 O -0.476 6.476 8 C -0.182 4.182 9 C 0.575 3.425 10 O -0.558 6.558 11 N -0.579 5.579 12 C 0.205 3.795 13 C -0.545 4.545 14 H 0.082 0.918 15 C 0.086 3.914 16 N -0.882 5.882 17 Si 0.853 3.147 18 H -0.258 1.258 19 H -0.283 1.283 20 H -0.266 1.266 21 C 0.123 3.877 22 C -0.130 4.130 23 C 0.059 3.941 24 N -0.548 5.548 25 C 0.021 3.979 26 C 0.025 3.975 27 C -0.011 4.011 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.157 0.843 34 H 0.402 0.598 35 H 0.032 0.968 36 H 0.031 0.969 37 H 0.268 0.732 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.036 0.964 43 H 0.076 0.924 44 H 0.025 0.975 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.023 0.977 50 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.244 6.548 -3.764 7.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.110 4.110 3 C -0.154 4.154 4 C -0.027 4.027 5 N -0.228 5.228 6 C 0.157 3.843 7 O -0.283 6.283 8 C -0.188 4.188 9 C 0.362 3.638 10 O -0.438 6.438 11 N -0.308 5.308 12 C 0.084 3.916 13 C -0.583 4.583 14 H 0.100 0.900 15 C -0.119 4.119 16 N -0.519 5.519 17 Si 0.680 3.320 18 H -0.183 1.183 19 H -0.208 1.208 20 H -0.190 1.190 21 C -0.001 4.001 22 C -0.169 4.169 23 C -0.069 4.069 24 N -0.272 5.272 25 C -0.127 4.127 26 C -0.123 4.123 27 C -0.036 4.036 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.174 0.826 34 H 0.260 0.740 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.094 0.906 44 H 0.043 0.957 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.042 0.958 50 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.477 7.411 -4.778 9.159 hybrid contribution -1.222 -0.535 1.082 1.718 sum 1.255 6.876 -3.696 7.906 Atomic orbital electron populations 1.21955 0.94551 1.01884 1.02954 1.20395 0.96378 0.91259 1.03003 1.20900 1.02186 0.98699 0.93633 1.22460 0.93794 0.88793 0.97652 1.67175 1.15579 1.08813 1.31251 1.19010 0.94234 0.84409 0.86613 1.84649 1.27880 1.20204 1.95608 1.21019 1.07033 0.96389 0.94364 1.17778 0.84111 0.79168 0.82725 1.90692 1.23311 1.50979 1.78842 1.47758 1.15057 1.47477 1.20501 1.19905 0.80570 0.93690 0.97481 1.21323 1.02468 1.01834 1.32657 0.90020 1.24785 0.97854 0.94522 0.94757 1.69880 1.29929 1.10988 1.41102 0.87268 0.83373 0.79920 0.81446 1.18337 1.20838 1.19035 1.21259 1.02155 0.88932 0.87757 1.21956 1.02076 0.94675 0.98184 1.22067 1.00856 0.87084 0.96900 1.61961 1.14680 1.07485 1.43088 1.22439 0.87340 1.02049 1.00893 1.22364 1.01038 0.96874 0.92038 1.22417 0.88311 0.92092 1.00817 0.90957 0.93183 0.92465 0.91186 0.90169 0.82596 0.73986 0.94978 0.95123 0.92188 0.89999 0.90423 0.90862 0.91894 0.94599 0.90601 0.95654 0.91724 0.90879 0.91393 0.91620 0.95812 0.80818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.90 37.16 0.37 -1.96 16 2 C -0.07 -1.01 6.08 -27.88 -0.17 -1.18 16 3 C -0.15 -2.44 5.14 -104.54 -0.54 -2.98 16 4 C 0.13 1.97 10.84 -17.49 -0.19 1.79 16 5 N -0.51 -8.86 10.37 -12.98 -0.13 -8.99 16 6 C 0.34 6.22 7.76 -16.61 -0.13 6.09 16 7 O -0.48 -8.22 12.83 -18.81 -0.24 -8.46 16 8 C -0.18 -3.55 4.65 -104.69 -0.49 -4.04 16 9 C 0.58 12.00 6.81 -12.48 -0.09 11.91 16 10 O -0.56 -12.28 16.41 4.45 0.07 -12.21 16 11 N -0.58 -11.79 2.46 -176.30 -0.43 -12.22 16 12 C 0.20 4.45 3.76 -5.19 -0.02 4.43 16 13 C -0.54 -13.23 7.68 -34.44 -0.26 -13.49 16 14 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 15 C 0.09 2.13 5.47 -17.82 -0.10 2.03 16 16 N -0.88 -23.55 13.96 55.43 0.77 -22.78 16 17 Si 0.85 18.69 26.61 -169.99 -4.52 14.16 16 18 H -0.26 -5.33 5.51 56.52 0.31 -5.01 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.27 -5.76 6.54 56.52 0.37 -5.39 16 21 C 0.12 2.18 5.46 -4.04 -0.02 2.15 16 22 C -0.13 -2.05 5.46 -26.73 -0.15 -2.20 16 23 C 0.06 0.79 4.96 -3.83 -0.02 0.78 16 24 N -0.55 -7.05 5.02 -251.26 -1.26 -8.31 16 25 C 0.02 0.25 9.32 60.06 0.56 0.81 16 26 C 0.03 0.26 9.57 60.06 0.57 0.83 16 27 C -0.01 -0.21 7.57 -38.89 -0.29 -0.50 16 28 H 0.07 1.32 5.45 -51.93 -0.28 1.04 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 32 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 33 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.40 5.28 9.06 45.56 0.41 5.69 16 35 H 0.03 0.70 7.17 -51.93 -0.37 0.33 16 36 H 0.03 0.68 5.21 -51.93 -0.27 0.41 16 37 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 38 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 39 H 0.08 1.39 7.37 -51.93 -0.38 1.00 16 40 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 41 H 0.06 1.01 6.55 -51.93 -0.34 0.67 16 42 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 43 H 0.08 0.98 8.06 -51.93 -0.42 0.56 16 44 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 45 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 46 H 0.07 0.92 6.47 -51.93 -0.34 0.58 16 47 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 48 H 0.06 0.60 8.12 -51.93 -0.42 0.17 16 49 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.17 3.62 5.71 -52.49 -0.30 3.32 16 LS Contribution 400.18 15.07 6.03 6.03 Total: -1.00 -29.32 400.18 -8.13 -37.45 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -7.45 Total: 10.85 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -0.96 Total: 4.48 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -1.06 Total: -52.30 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.17 Total: -20.67 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.52 Total: 14.16 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.32 -8.13 -37.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596925217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.269 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds