Wall clock time and date at job start Tue Mar 31 2020 18:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00380 * 2 1 4 4 N 1.46904 * 109.47183 * 235.91898 * 3 2 1 5 5 C 1.46903 * 110.99722 * 59.10527 * 4 3 2 6 6 C 1.50701 * 109.46904 * 75.46868 * 5 4 3 7 7 H 1.07992 * 120.00081 * 4.37767 * 6 5 4 8 8 C 1.37878 * 120.00054 * 184.38451 * 6 5 4 9 9 N 1.31514 * 120.00032 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00171 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47265 * 59.99480 * 10 8 6 12 12 H 1.48500 * 109.47183 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46856 * 299.99495 * 10 8 6 14 14 C 1.46897 * 110.99899 * 295.15745 * 4 3 2 15 15 N 1.46500 * 109.47041 * 278.94834 * 14 4 3 16 16 C 1.33789 * 124.18133 * 269.70263 * 15 14 4 17 17 O 1.21541 * 123.76730 * 0.03785 * 16 15 14 18 18 N 1.34525 * 112.46125 * 179.86095 * 16 15 14 19 19 C 1.47312 * 106.61545 * 0.38599 * 18 16 15 20 20 C 1.53004 * 110.72749 * 241.18424 * 19 18 16 21 21 C 1.53004 * 110.59876 * 118.30703 * 19 18 16 22 22 C 1.54882 * 110.75732 * 58.83524 * 21 19 18 23 23 C 1.54263 * 104.19518 * 203.74318 * 22 21 19 24 24 C 1.53871 * 106.59840 * 23.61052 * 23 22 21 25 25 C 1.54262 * 106.60011 * 359.97438 * 24 23 22 26 26 C 1.34767 * 124.17438 * 90.00057 * 15 14 4 27 27 O 1.21229 * 127.16215 * 0.02562 * 26 15 14 28 28 H 1.07989 * 120.00512 * 180.02562 * 1 2 3 29 29 H 1.08006 * 119.99472 * 359.72603 * 1 2 3 30 30 H 1.08001 * 119.99687 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47280 * 355.91585 * 3 2 1 32 32 H 1.09001 * 109.47305 * 115.92391 * 3 2 1 33 33 H 1.08996 * 109.47444 * 195.46532 * 5 4 3 34 34 H 1.08998 * 109.47469 * 315.46772 * 5 4 3 35 35 H 0.96996 * 120.00577 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.47635 * 38.95188 * 14 4 3 37 37 H 1.09001 * 109.47179 * 158.95341 * 14 4 3 38 38 H 0.97003 * 126.69114 * 180.12223 * 18 16 15 39 39 H 1.08997 * 109.47048 * 179.68390 * 20 19 18 40 40 H 1.08998 * 109.47305 * 299.68795 * 20 19 18 41 41 H 1.08998 * 109.46953 * 59.68913 * 20 19 18 42 42 H 1.09004 * 110.67072 * 182.27472 * 21 19 18 43 43 H 1.08998 * 110.49060 * 322.42279 * 22 21 19 44 44 H 1.09005 * 110.48608 * 85.06900 * 22 21 19 45 45 H 1.09004 * 110.03184 * 264.32647 * 23 22 21 46 46 H 1.08997 * 110.07529 * 142.91702 * 23 22 21 47 47 H 1.09003 * 110.03638 * 240.71323 * 24 23 22 48 48 H 1.09007 * 110.07450 * 119.30720 * 24 23 22 49 49 H 1.08995 * 110.48771 * 217.70962 * 25 24 23 50 50 H 1.09005 * 110.60028 * 95.12344 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9805 1.3410 -1.1471 5 6 2.2469 1.2006 -2.4121 6 6 1.5483 2.4965 -2.7341 7 1 1.6968 3.3610 -2.1042 8 6 0.7196 2.5784 -3.8330 9 7 0.5391 1.5257 -4.6004 10 14 -0.1458 4.1849 -4.2326 11 1 0.8654 5.2472 -4.4658 12 1 -0.9719 4.0116 -5.4543 13 1 -1.0184 4.5733 -3.0954 14 6 4.0189 0.3093 -1.0236 15 7 5.0772 0.7863 -0.1299 16 6 6.1582 1.4609 -0.5378 17 8 6.3757 1.7505 -1.6980 18 7 6.9754 1.7862 0.4800 19 6 6.3564 1.2507 1.7049 20 6 6.0298 2.3796 2.6846 21 6 7.2724 0.2171 2.3633 22 6 8.6427 0.8454 2.7189 23 6 9.6071 -0.3573 2.7754 24 6 8.9806 -1.4641 1.9093 25 6 7.6571 -0.8957 1.3573 26 6 5.0850 0.5946 1.2041 27 8 4.2497 0.0166 1.8658 28 1 -0.5400 -0.9352 0.0004 29 1 -0.5399 0.9354 0.0045 30 1 1.8499 -0.9353 0.0004 31 1 1.3576 2.1322 -0.0732 32 1 2.6343 1.3950 0.9242 33 1 2.9455 0.9559 -3.2121 34 1 1.5091 0.4038 -2.3178 35 1 -0.0437 1.5834 -5.3736 36 1 3.5802 -0.6007 -0.6141 37 1 4.4408 0.0989 -2.0063 38 1 7.8114 2.2744 0.4188 39 1 5.5684 1.9620 3.5795 40 1 6.9475 2.9003 2.9581 41 1 5.3406 3.0809 2.2141 42 1 6.7985 -0.2092 3.2476 43 1 8.9531 1.5472 1.9449 44 1 8.5948 1.3417 3.6882 45 1 9.7131 -0.7029 3.8037 46 1 10.5806 -0.0754 2.3743 47 1 8.7826 -2.3470 2.5172 48 1 9.6494 -1.7196 1.0873 49 1 6.8903 -1.6699 1.3324 50 1 7.8055 -0.4751 0.3626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793572385.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:47 Heat of formation + Delta-G solvation = -17.749182 kcal Electronic energy + Delta-G solvation = -31033.373827 eV Core-core repulsion = 27061.983525 eV Total energy + Delta-G solvation = -3971.390302 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.53797 -38.71490 -38.37452 -37.22772 -35.83404 -34.33604 -32.80707 -31.82765 -31.04086 -29.16355 -28.15734 -27.51739 -26.48898 -24.53631 -23.79081 -22.36366 -21.19767 -20.78174 -20.17736 -20.15714 -18.83099 -17.72895 -16.98926 -16.41186 -16.19862 -15.99687 -15.49147 -15.14712 -15.11164 -15.02501 -14.51874 -14.30912 -14.03012 -13.79453 -13.61398 -13.55234 -13.44359 -12.76875 -12.68244 -12.55332 -12.17685 -11.77207 -11.61158 -11.58232 -11.41384 -11.29670 -11.16961 -11.02846 -10.99348 -10.80206 -10.73838 -10.73099 -10.51094 -10.44895 -10.03495 -9.86650 -9.58218 -9.41799 -9.27804 -8.70990 -8.37526 -7.43159 -5.98439 -3.99144 1.78431 2.41214 2.90845 3.16043 3.30114 3.36530 3.40303 3.43863 3.87963 4.10127 4.21408 4.40346 4.46149 4.65194 4.82379 4.97901 5.09077 5.14508 5.17157 5.19171 5.27116 5.36071 5.37020 5.37103 5.42108 5.50960 5.52420 5.62957 5.66861 5.74323 5.78802 5.83016 5.85854 5.90032 5.91406 6.00167 6.05544 6.12352 6.43389 6.61572 6.86597 7.11118 7.17938 7.27841 7.34269 7.40520 7.54969 7.80621 8.02036 8.13303 8.37417 8.50338 9.06615 9.63978 11.11996 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018639 B = 0.003250 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.874871 B = 8612.556047 C = 9088.296005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.176 4.176 3 C 0.090 3.910 4 N -0.538 5.538 5 C 0.197 3.803 6 C -0.501 4.501 7 H 0.061 0.939 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.276 3.724 15 N -0.560 5.560 16 C 0.706 3.294 17 O -0.531 6.531 18 N -0.725 5.725 19 C 0.127 3.873 20 C -0.145 4.145 21 C -0.086 4.086 22 C -0.114 4.114 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.128 4.128 26 C 0.532 3.468 27 O -0.468 6.468 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.027 0.973 34 H 0.013 0.987 35 H 0.261 0.739 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.433 0.567 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.067 0.933 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.317 -4.271 17.832 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.195 4.195 3 C -0.038 4.038 4 N -0.263 5.263 5 C 0.073 3.927 6 C -0.540 4.540 7 H 0.079 0.921 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C 0.065 3.935 15 N -0.307 5.307 16 C 0.407 3.593 17 O -0.403 6.403 18 N -0.390 5.390 19 C 0.036 3.964 20 C -0.204 4.204 21 C -0.105 4.105 22 C -0.152 4.152 23 C -0.161 4.161 24 C -0.159 4.159 25 C -0.165 4.165 26 C 0.318 3.682 27 O -0.338 6.338 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.278 0.722 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.117 0.883 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.085 0.915 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.007 -4.071 17.267 23.894 hybrid contribution -0.597 0.266 -0.432 0.784 sum 15.410 -3.805 16.835 23.138 Atomic orbital electron populations 1.23680 0.95925 1.01182 1.00695 1.23413 0.96662 0.99452 1.00014 1.21291 0.94743 0.94743 0.93027 1.62042 1.13741 1.45262 1.05209 1.19793 0.92166 0.97773 0.83017 1.21024 1.25844 0.96676 1.10468 0.92089 1.24943 0.96747 0.96543 0.96197 1.69936 1.38371 1.29004 1.16456 0.86576 0.79477 0.83877 0.77561 1.20221 1.21396 1.20336 1.22161 0.85519 0.92211 0.93566 1.46677 1.22157 1.52196 1.09656 1.15870 0.80015 0.78199 0.85230 1.91037 1.75535 1.57191 1.16504 1.45659 1.26141 1.61245 1.05988 1.21362 0.91753 0.95565 0.87678 1.21965 1.03188 0.96759 0.98445 1.22358 0.95057 0.94246 0.98879 1.22368 0.93434 0.97715 1.01665 1.22109 0.98649 0.95210 1.00102 1.22074 0.96299 0.98207 0.99284 1.22486 0.97530 0.97496 0.99029 1.20670 0.86733 0.78517 0.82272 1.90771 1.41589 1.39760 1.61690 0.89527 0.88497 0.88580 0.89732 0.91988 0.95484 0.96906 0.92910 0.91305 0.87959 0.72230 0.90045 0.90478 0.91097 0.88285 0.91389 0.90992 0.91703 0.91695 0.91749 0.91715 0.91470 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 14.29 29.01 0.41 -2.79 16 2 C -0.18 -3.32 7.36 -36.03 -0.27 -3.58 16 3 C 0.09 1.80 5.65 -4.98 -0.03 1.77 16 4 N -0.54 -11.78 4.73 -241.43 -1.14 -12.92 16 5 C 0.20 5.11 4.61 -4.97 -0.02 5.08 16 6 C -0.50 -14.21 8.67 -34.44 -0.30 -14.51 16 7 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 10 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.28 5.20 5.41 -63.32 -0.34 4.86 16 15 N -0.56 -9.16 2.82 -124.03 -0.35 -9.51 16 16 C 0.71 11.42 8.05 -88.02 -0.71 10.71 16 17 O -0.53 -10.82 17.48 5.33 0.09 -10.73 16 18 N -0.72 -8.03 4.65 -52.93 -0.25 -8.28 16 19 C 0.13 1.30 0.78 -132.09 -0.10 1.20 16 20 C -0.15 -1.23 8.76 37.16 0.33 -0.91 16 21 C -0.09 -0.70 2.40 -88.64 -0.21 -0.91 16 22 C -0.11 -0.68 5.41 -25.08 -0.14 -0.82 16 23 C -0.12 -0.73 6.80 -25.62 -0.17 -0.91 16 24 C -0.12 -0.87 6.80 -25.62 -0.17 -1.04 16 25 C -0.13 -1.16 5.61 -25.09 -0.14 -1.30 16 26 C 0.53 7.59 5.58 -10.55 -0.06 7.53 16 27 O -0.47 -7.51 16.47 5.60 0.09 -7.42 16 28 H 0.09 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.10 1.78 7.84 -52.48 -0.41 1.37 16 30 H 0.10 1.74 6.70 -52.49 -0.35 1.38 16 31 H 0.08 1.82 7.30 -51.93 -0.38 1.44 16 32 H 0.06 1.18 5.86 -51.93 -0.30 0.87 16 33 H 0.03 0.76 7.55 -51.93 -0.39 0.37 16 34 H 0.01 0.36 6.57 -51.93 -0.34 0.01 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.07 1.22 5.91 -51.93 -0.31 0.92 16 37 H 0.10 2.01 7.21 -51.93 -0.37 1.64 16 38 H 0.43 3.71 7.92 -40.82 -0.32 3.39 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.47 7.57 -51.93 -0.39 0.07 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.38 6.68 -51.93 -0.35 0.04 16 44 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.07 0.75 6.70 -51.93 -0.35 0.40 16 LS Contribution 393.19 15.07 5.93 5.93 Total: -1.00 -33.02 393.19 -9.98 -43.00 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -8.04 Total: 3.03 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -2.02 Total: 5.92 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -1.00 Total: -56.73 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.19 Total: -18.15 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.02 -9.98 -43.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793572385.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.252 kcal (2) G-P(sol) polarization free energy of solvation -33.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds