Wall clock time and date at job start Tue Mar 31 2020 18:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00380 * 2 1 4 4 N 1.46904 * 109.47183 * 235.91898 * 3 2 1 5 5 C 1.46903 * 110.99722 * 59.10527 * 4 3 2 6 6 C 1.50701 * 109.46904 * 75.46868 * 5 4 3 7 7 H 1.07992 * 120.00081 * 4.37767 * 6 5 4 8 8 C 1.37878 * 120.00054 * 184.38451 * 6 5 4 9 9 N 1.31514 * 120.00032 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00171 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47265 * 59.99480 * 10 8 6 12 12 H 1.48500 * 109.47183 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46856 * 299.99495 * 10 8 6 14 14 C 1.46897 * 110.99899 * 295.15745 * 4 3 2 15 15 N 1.46500 * 109.47041 * 278.94834 * 14 4 3 16 16 C 1.33789 * 124.18133 * 269.70263 * 15 14 4 17 17 O 1.21541 * 123.76730 * 0.03785 * 16 15 14 18 18 N 1.34525 * 112.46125 * 179.86095 * 16 15 14 19 19 C 1.47312 * 106.61545 * 0.38599 * 18 16 15 20 20 C 1.53004 * 110.72749 * 241.18424 * 19 18 16 21 21 C 1.53004 * 110.59876 * 118.30703 * 19 18 16 22 22 C 1.54882 * 110.75732 * 58.83524 * 21 19 18 23 23 C 1.54263 * 104.19518 * 203.74318 * 22 21 19 24 24 C 1.53871 * 106.59840 * 23.61052 * 23 22 21 25 25 C 1.54262 * 106.60011 * 359.97438 * 24 23 22 26 26 C 1.34767 * 124.17438 * 90.00057 * 15 14 4 27 27 O 1.21229 * 127.16215 * 0.02562 * 26 15 14 28 28 H 1.07989 * 120.00512 * 180.02562 * 1 2 3 29 29 H 1.08006 * 119.99472 * 359.72603 * 1 2 3 30 30 H 1.08001 * 119.99687 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47280 * 355.91585 * 3 2 1 32 32 H 1.09001 * 109.47305 * 115.92391 * 3 2 1 33 33 H 1.08996 * 109.47444 * 195.46532 * 5 4 3 34 34 H 1.08998 * 109.47469 * 315.46772 * 5 4 3 35 35 H 0.96996 * 120.00577 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.47635 * 38.95188 * 14 4 3 37 37 H 1.09001 * 109.47179 * 158.95341 * 14 4 3 38 38 H 0.97003 * 126.69114 * 180.12223 * 18 16 15 39 39 H 1.08997 * 109.47048 * 179.68390 * 20 19 18 40 40 H 1.08998 * 109.47305 * 299.68795 * 20 19 18 41 41 H 1.08998 * 109.46953 * 59.68913 * 20 19 18 42 42 H 1.09004 * 110.67072 * 182.27472 * 21 19 18 43 43 H 1.08998 * 110.49060 * 322.42279 * 22 21 19 44 44 H 1.09005 * 110.48608 * 85.06900 * 22 21 19 45 45 H 1.09004 * 110.03184 * 264.32647 * 23 22 21 46 46 H 1.08997 * 110.07529 * 142.91702 * 23 22 21 47 47 H 1.09003 * 110.03638 * 240.71323 * 24 23 22 48 48 H 1.09007 * 110.07450 * 119.30720 * 24 23 22 49 49 H 1.08995 * 110.48771 * 217.70962 * 25 24 23 50 50 H 1.09005 * 110.60028 * 95.12344 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9805 1.3410 -1.1471 5 6 2.2469 1.2006 -2.4121 6 6 1.5483 2.4965 -2.7341 7 1 1.6968 3.3610 -2.1042 8 6 0.7196 2.5784 -3.8330 9 7 0.5391 1.5257 -4.6004 10 14 -0.1458 4.1849 -4.2326 11 1 0.8654 5.2472 -4.4658 12 1 -0.9719 4.0116 -5.4543 13 1 -1.0184 4.5733 -3.0954 14 6 4.0189 0.3093 -1.0236 15 7 5.0772 0.7863 -0.1299 16 6 6.1582 1.4609 -0.5378 17 8 6.3757 1.7505 -1.6980 18 7 6.9754 1.7862 0.4800 19 6 6.3564 1.2507 1.7049 20 6 6.0298 2.3796 2.6846 21 6 7.2724 0.2171 2.3633 22 6 8.6427 0.8454 2.7189 23 6 9.6071 -0.3573 2.7754 24 6 8.9806 -1.4641 1.9093 25 6 7.6571 -0.8957 1.3573 26 6 5.0850 0.5946 1.2041 27 8 4.2497 0.0166 1.8658 28 1 -0.5400 -0.9352 0.0004 29 1 -0.5399 0.9354 0.0045 30 1 1.8499 -0.9353 0.0004 31 1 1.3576 2.1322 -0.0732 32 1 2.6343 1.3950 0.9242 33 1 2.9455 0.9559 -3.2121 34 1 1.5091 0.4038 -2.3178 35 1 -0.0437 1.5834 -5.3736 36 1 3.5802 -0.6007 -0.6141 37 1 4.4408 0.0989 -2.0063 38 1 7.8114 2.2744 0.4188 39 1 5.5684 1.9620 3.5795 40 1 6.9475 2.9003 2.9581 41 1 5.3406 3.0809 2.2141 42 1 6.7985 -0.2092 3.2476 43 1 8.9531 1.5472 1.9449 44 1 8.5948 1.3417 3.6882 45 1 9.7131 -0.7029 3.8037 46 1 10.5806 -0.0754 2.3743 47 1 8.7826 -2.3470 2.5172 48 1 9.6494 -1.7196 1.0873 49 1 6.8903 -1.6699 1.3324 50 1 7.8055 -0.4751 0.3626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793572385.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:46 Heat of formation + Delta-G solvation = -39.577736 kcal Electronic energy + Delta-G solvation = -31034.320384 eV Core-core repulsion = 27061.983525 eV Total energy + Delta-G solvation = -3972.336859 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.70270 -39.75990 -39.63319 -38.66236 -37.02526 -35.57969 -34.84792 -33.44253 -32.03642 -29.80267 -29.44817 -28.76534 -28.02192 -26.04188 -25.24078 -23.51230 -22.89745 -21.88420 -21.03520 -20.93482 -20.28899 -18.93027 -18.42503 -18.14335 -17.50890 -16.88278 -16.77756 -16.63358 -16.46577 -16.26742 -16.09940 -15.78259 -15.40764 -15.18929 -14.56424 -14.37018 -14.33076 -14.15434 -14.07303 -13.51659 -13.39782 -13.35288 -13.09335 -12.84757 -12.65104 -12.49676 -12.42286 -12.27176 -12.17229 -12.07340 -12.00362 -11.88220 -11.83062 -11.61688 -11.49872 -11.22683 -11.01637 -10.98920 -10.59872 -10.43651 -10.24482 -9.22731 -8.18466 -6.27767 0.60005 1.15515 1.39131 1.40411 1.42951 1.50434 1.99040 2.16163 2.40541 2.86719 3.13807 3.27102 3.32625 3.52917 3.75200 3.78703 3.98351 3.99066 4.12641 4.19021 4.25515 4.39404 4.45058 4.53952 4.55579 4.58564 4.61741 4.67373 4.72112 4.78878 4.86645 4.88619 4.93857 4.99785 5.12341 5.13053 5.14956 5.22799 5.25864 5.31649 5.39931 5.52856 5.61226 5.67266 5.82584 5.84799 6.00322 6.07907 6.25465 6.35873 6.46382 6.84262 7.15100 7.40233 8.91457 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018639 B = 0.003250 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.874871 B = 8612.556047 C = 9088.296005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.189 4.189 3 C 0.099 3.901 4 N -0.549 5.549 5 C 0.216 3.784 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.964 3.036 11 H -0.274 1.274 12 H -0.281 1.281 13 H -0.266 1.266 14 C 0.282 3.718 15 N -0.568 5.568 16 C 0.703 3.297 17 O -0.581 6.581 18 N -0.698 5.698 19 C 0.138 3.862 20 C -0.143 4.143 21 C -0.081 4.081 22 C -0.109 4.109 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.132 4.132 26 C 0.525 3.475 27 O -0.486 6.486 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.073 0.927 33 H -0.004 1.004 34 H -0.003 1.003 35 H 0.264 0.736 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.448 0.552 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.052 0.948 42 H 0.108 0.892 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.062 0.938 49 H 0.049 0.951 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.423 -3.320 20.432 27.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.209 4.209 3 C -0.029 4.029 4 N -0.273 5.273 5 C 0.091 3.909 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.570 5.570 10 Si 0.789 3.211 11 H -0.199 1.199 12 H -0.207 1.207 13 H -0.191 1.191 14 C 0.071 3.929 15 N -0.314 5.314 16 C 0.403 3.597 17 O -0.457 6.457 18 N -0.364 5.364 19 C 0.048 3.952 20 C -0.201 4.201 21 C -0.100 4.100 22 C -0.146 4.146 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.170 4.170 26 C 0.314 3.686 27 O -0.357 6.357 28 H 0.128 0.872 29 H 0.110 0.890 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.014 0.986 34 H 0.015 0.985 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.296 0.704 39 H 0.112 0.888 40 H 0.130 0.870 41 H 0.071 0.929 42 H 0.126 0.874 43 H 0.092 0.908 44 H 0.113 0.887 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.068 0.932 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.161 -3.114 19.950 26.499 hybrid contribution -0.922 -0.115 -1.196 1.515 sum 16.239 -3.229 18.753 25.016 Atomic orbital electron populations 1.23871 0.95747 1.02093 0.99169 1.23386 0.97063 0.99067 1.01366 1.21170 0.94320 0.94897 0.92504 1.61910 1.14237 1.46890 1.04257 1.19361 0.91077 0.96396 0.84104 1.21288 1.26389 0.97257 1.10760 0.92725 1.25792 0.97366 1.00052 0.95882 1.70055 1.38985 1.31069 1.16880 0.85522 0.78403 0.79450 0.77755 1.19918 1.20654 1.19102 1.21921 0.85305 0.91989 0.93705 1.46616 1.21703 1.52599 1.10444 1.16023 0.80356 0.77969 0.85319 1.91000 1.76667 1.59302 1.18759 1.45529 1.25764 1.60032 1.05048 1.21545 0.89762 0.96617 0.87303 1.22039 1.04644 0.95604 0.97808 1.22406 0.95932 0.93263 0.98390 1.22408 0.91349 0.97816 1.03072 1.22110 0.98757 0.94481 1.00427 1.22071 0.95145 0.98964 0.99539 1.22488 0.98337 0.97567 0.98634 1.21418 0.87936 0.78065 0.81232 1.90755 1.42693 1.40518 1.61696 0.87215 0.88991 0.87802 0.91527 0.90906 0.98579 0.98479 0.92690 0.90288 0.89688 0.70403 0.88795 0.87002 0.92884 0.87400 0.90837 0.88666 0.90530 0.90954 0.91355 0.91961 0.93198 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.13 14.29 67.78 0.97 -5.16 16 2 C -0.19 -7.20 7.36 25.65 0.19 -7.01 16 3 C 0.10 4.03 5.65 85.56 0.48 4.52 16 4 N -0.55 -24.99 4.73 -917.75 -4.34 -29.33 16 5 C 0.22 11.75 4.61 85.56 0.39 12.15 16 6 C -0.52 -30.21 8.67 25.60 0.22 -29.99 16 7 H 0.05 3.18 7.81 -2.91 -0.02 3.16 16 8 C 0.01 0.43 5.46 84.65 0.46 0.90 16 9 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 10 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 11 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 14 C 0.28 11.17 5.41 170.81 0.92 12.09 16 15 N -0.57 -19.04 2.82 -783.56 -2.21 -21.25 16 16 C 0.70 23.20 8.05 179.44 1.45 24.65 16 17 O -0.58 -24.74 17.48 -3.85 -0.07 -24.81 16 18 N -0.70 -14.67 4.65 -439.80 -2.04 -16.72 16 19 C 0.14 2.56 0.78 2.99 0.00 2.56 16 20 C -0.14 -1.98 8.76 71.98 0.63 -1.35 16 21 C -0.08 -1.11 2.40 -9.51 -0.02 -1.13 16 22 C -0.11 -0.87 5.41 31.67 0.17 -0.70 16 23 C -0.12 -1.02 6.80 31.32 0.21 -0.81 16 24 C -0.12 -1.51 6.80 31.32 0.21 -1.29 16 25 C -0.13 -2.29 5.61 31.66 0.18 -2.11 16 26 C 0.53 14.78 5.58 87.94 0.49 15.27 16 27 O -0.49 -15.32 16.47 -2.87 -0.05 -15.37 16 28 H 0.11 3.40 8.06 -2.92 -0.02 3.37 16 29 H 0.09 3.38 7.84 -2.91 -0.02 3.35 16 30 H 0.10 3.77 6.70 -2.91 -0.02 3.75 16 31 H 0.07 2.94 7.30 -2.39 -0.02 2.92 16 32 H 0.07 2.79 5.86 -2.39 -0.01 2.77 16 33 H 0.00 -0.23 7.55 -2.39 -0.02 -0.25 16 34 H 0.00 -0.14 6.57 -2.39 -0.02 -0.16 16 35 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.08 2.92 5.91 -2.38 -0.01 2.91 16 37 H 0.08 3.62 7.21 -2.39 -0.02 3.60 16 38 H 0.45 6.78 7.92 -92.71 -0.73 6.05 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.11 0.82 7.57 -2.39 -0.02 0.80 16 41 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 0.53 6.68 -2.39 -0.02 0.51 16 44 H 0.09 0.41 8.12 -2.38 -0.02 0.39 16 45 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 49 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.05 1.12 6.70 -2.38 -0.02 1.10 16 Total: -1.00 -74.10 393.19 0.78 -73.33 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.21 Total: 20.25 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: 6.96 Total: 22.59 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -8.31 Total: -123.47 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -0.11 Total: -40.18 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -74.10 0.78 -73.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793572385.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.748 kcal (2) G-P(sol) polarization free energy of solvation -74.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds