Wall clock time and date at job start Tue Mar 31 2020 19:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38037 * 126.29155 * 2 1 4 4 C 1.47428 * 126.41602 * 0.02562 * 3 2 1 5 5 O 1.21607 * 119.99742 * 359.71236 * 4 3 2 6 6 N 1.34773 * 120.00408 * 179.71406 * 4 3 2 7 7 C 1.46501 * 120.00122 * 179.97438 * 6 4 3 8 8 H 1.08993 * 112.90929 * 336.25213 * 7 6 4 9 9 C 1.53962 * 113.66387 * 107.55425 * 7 6 4 10 10 C 1.53782 * 87.11063 * 139.88885 * 9 7 6 11 11 H 1.08997 * 113.61225 * 89.18406 * 10 9 7 12 12 O 1.42900 * 113.68763 * 220.07839 * 10 9 7 13 13 C 1.42899 * 113.99869 * 247.53653 * 12 10 9 14 14 C 1.52998 * 109.47375 * 60.00257 * 13 12 10 15 15 C 1.52996 * 109.47305 * 180.02562 * 13 12 10 16 16 C 1.53005 * 109.47032 * 300.00253 * 13 12 10 17 17 C 1.53781 * 87.08260 * 334.63747 * 10 9 7 18 18 C 1.41291 * 107.17305 * 179.75497 * 3 2 1 19 19 N 1.30451 * 108.02089 * 0.24236 * 18 3 2 20 20 N 1.34257 * 126.29127 * 180.17039 * 2 1 3 21 21 C 1.46500 * 125.75552 * 0.02562 * 20 2 1 22 22 C 1.50697 * 109.47264 * 270.31456 * 21 20 2 23 23 H 1.08001 * 120.00028 * 359.97438 * 22 21 20 24 24 C 1.37878 * 120.00038 * 180.02562 * 22 21 20 25 25 N 1.31515 * 119.99990 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99745 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47317 * 60.00187 * 26 24 22 28 28 H 1.48499 * 109.46873 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47345 * 299.99600 * 26 24 22 30 30 H 1.09002 * 109.46670 * 90.03405 * 1 2 3 31 31 H 1.08998 * 109.47068 * 210.02448 * 1 2 3 32 32 H 1.08994 * 109.47542 * 330.03200 * 1 2 3 33 33 H 0.97002 * 120.00080 * 0.02562 * 6 4 3 34 34 H 1.08997 * 113.53543 * 25.33559 * 9 7 6 35 35 H 1.08998 * 113.73879 * 254.47157 * 9 7 6 36 36 H 1.08999 * 109.47230 * 59.99456 * 14 13 12 37 37 H 1.08998 * 109.47566 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.46882 * 300.00127 * 14 13 12 39 39 H 1.09008 * 109.47217 * 59.99996 * 15 13 12 40 40 H 1.09001 * 109.47451 * 179.97438 * 15 13 12 41 41 H 1.08998 * 109.47317 * 300.00336 * 15 13 12 42 42 H 1.09000 * 109.47180 * 59.99900 * 16 13 12 43 43 H 1.09001 * 109.47296 * 180.02562 * 16 13 12 44 44 H 1.09000 * 109.47321 * 299.99737 * 16 13 12 45 45 H 1.09002 * 113.61445 * 139.98212 * 17 10 9 46 46 H 1.09002 * 113.61408 * 270.79943 * 17 10 9 47 47 H 1.07995 * 125.99017 * 180.27369 * 18 3 2 48 48 H 1.09005 * 109.47085 * 30.31158 * 21 20 2 49 49 H 1.09004 * 109.47284 * 150.31164 * 21 20 2 50 50 H 0.97004 * 119.99510 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5202 0.0005 5 8 0.6996 2.7877 -0.0043 6 7 2.7999 3.5106 0.0063 7 6 2.3643 4.9094 0.0062 8 1 1.3627 5.0419 -0.4026 9 6 2.5803 5.6239 1.3528 10 6 3.0181 6.8545 0.5410 11 1 2.1955 7.5196 0.2786 12 8 4.1337 7.5470 1.1049 13 6 3.8186 8.8494 1.6015 14 6 2.7577 8.7344 2.6978 15 6 5.0805 9.4944 2.1780 16 6 3.2805 9.7141 0.4597 17 6 3.4033 5.8781 -0.5829 18 6 3.6590 0.6498 0.0058 19 7 3.6341 -0.6544 0.0037 20 7 2.3017 -1.0821 -0.0032 21 6 1.8501 -2.4758 -0.0079 22 6 1.6873 -2.9559 1.4112 23 1 1.8995 -2.2897 2.2344 24 6 1.2686 -4.2460 1.6588 25 7 1.0108 -5.0574 0.6565 26 14 1.0675 -4.8413 3.4180 27 1 0.0626 -3.9981 4.1142 28 1 0.6097 -6.2539 3.4133 29 1 2.3698 -4.7449 4.1251 30 1 -0.3633 -0.0006 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3634 0.8902 0.5133 33 1 3.7461 3.2973 0.0097 34 1 3.3800 5.1895 1.9527 35 1 1.6623 5.7788 1.9196 36 1 3.1410 8.1182 3.5112 37 1 2.5170 9.7278 3.0763 38 1 1.8588 8.2750 2.2867 39 1 5.8361 9.5765 1.3966 40 1 4.8403 10.4880 2.5564 41 1 5.4643 8.8785 2.9913 42 1 2.3816 9.2548 0.0486 43 1 3.0406 10.7077 0.8383 44 1 4.0363 9.7962 -0.3214 45 1 3.1489 6.2377 -1.5800 46 1 4.4285 5.5143 -0.5130 47 1 4.5448 1.2676 0.0114 48 1 0.8943 -2.5463 -0.5272 49 1 2.5876 -3.0950 -0.5186 50 1 0.7158 -5.9650 0.8308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892255775.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:54 Heat of formation + Delta-G solvation = -25.939215 kcal Electronic energy + Delta-G solvation = -28608.556655 eV Core-core repulsion = 24636.811207 eV Total energy + Delta-G solvation = -3971.745448 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.31040 -41.06193 -39.80739 -38.05462 -35.82366 -34.65145 -33.82880 -33.22727 -32.63740 -29.26047 -28.41586 -28.29039 -28.17764 -26.56969 -25.72123 -24.89161 -23.20382 -21.41953 -21.19692 -20.70377 -20.23061 -18.86435 -18.36311 -17.87529 -17.04671 -16.83620 -16.39978 -16.30571 -15.99971 -15.87538 -15.41648 -15.29175 -15.06097 -14.61887 -14.38817 -14.21754 -14.05186 -14.02052 -13.63404 -13.59197 -13.39304 -13.22914 -13.10850 -13.02879 -12.95975 -12.78855 -12.70988 -12.62123 -12.54093 -12.30705 -12.22472 -11.99084 -11.88183 -11.71149 -11.66269 -11.23784 -10.76633 -10.74272 -10.33605 -10.25699 -9.98750 -9.42255 -8.38104 -6.54678 0.68925 1.32876 1.38261 1.38764 1.47332 1.66482 2.29904 2.34126 2.54601 2.90136 2.94024 3.55443 3.63895 3.75617 3.78180 3.91516 3.93775 3.98002 4.04992 4.14358 4.16955 4.23549 4.39350 4.55612 4.66035 4.68641 4.71650 4.76469 4.79442 4.82763 4.84995 4.88944 4.91053 4.97436 4.98499 5.05247 5.06901 5.10997 5.15087 5.20240 5.27455 5.39317 5.42485 5.48357 5.63370 5.71822 5.74527 6.05182 6.46183 6.54221 6.66653 6.85932 7.16314 7.39027 8.69427 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022548 B = 0.001971 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.515125 B =14204.279379 C =14527.862590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.145 3.855 3 C -0.331 4.331 4 C 0.606 3.394 5 O -0.583 6.583 6 N -0.703 5.703 7 C 0.123 3.877 8 H 0.106 0.894 9 C -0.166 4.166 10 C 0.071 3.929 11 H 0.104 0.896 12 O -0.376 6.376 13 C 0.096 3.904 14 C -0.175 4.175 15 C -0.137 4.137 16 C -0.176 4.176 17 C -0.132 4.132 18 C 0.079 3.921 19 N -0.337 5.337 20 N -0.338 5.338 21 C 0.267 3.733 22 C -0.557 4.557 23 H 0.051 0.949 24 C 0.024 3.976 25 N -0.916 5.916 26 Si 0.971 3.029 27 H -0.267 1.267 28 H -0.273 1.273 29 H -0.273 1.273 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.412 0.588 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.226 0.774 48 H 0.050 0.950 49 H 0.032 0.968 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.766 29.944 -0.412 30.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.009 3.991 3 C -0.347 4.347 4 C 0.396 3.604 5 O -0.465 6.465 6 N -0.354 5.354 7 C 0.018 3.982 8 H 0.124 0.876 9 C -0.206 4.206 10 C 0.012 3.988 11 H 0.122 0.878 12 O -0.295 6.295 13 C 0.058 3.942 14 C -0.232 4.232 15 C -0.195 4.195 16 C -0.233 4.233 17 C -0.170 4.170 18 C -0.108 4.108 19 N -0.157 5.157 20 N -0.115 5.115 21 C 0.148 3.852 22 C -0.595 4.595 23 H 0.069 0.931 24 C -0.178 4.178 25 N -0.553 5.553 26 Si 0.794 3.206 27 H -0.192 1.192 28 H -0.197 1.197 29 H -0.199 1.199 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.249 0.751 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.118 0.882 47 H 0.242 0.758 48 H 0.068 0.932 49 H 0.050 0.950 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.757 28.624 -0.475 29.020 hybrid contribution -0.361 -0.311 0.796 0.928 sum 4.396 28.312 0.321 28.653 Atomic orbital electron populations 1.20575 0.85920 1.04192 1.04044 1.21979 0.95954 0.86741 0.94423 1.19984 0.93270 0.93155 1.28268 1.17152 0.85174 0.83866 0.74237 1.90668 1.17948 1.84697 1.53193 1.45495 1.09730 1.04913 1.75223 1.22214 0.99621 0.78968 0.97387 0.87613 1.24041 1.01860 0.97072 0.97582 1.23352 0.90146 0.91436 0.93829 0.87797 1.88010 1.33929 1.29411 1.78187 1.21718 0.96086 0.82991 0.93447 1.22456 0.98719 1.03113 0.98956 1.21781 0.95928 1.00723 1.01027 1.22446 1.01625 1.00727 0.98546 1.23554 1.00010 0.94511 0.98905 1.24495 0.97663 0.91594 0.97018 1.77090 0.98370 1.14454 1.25756 1.49106 1.03363 1.07732 1.51336 1.19363 0.95274 0.72394 0.98121 1.21362 1.48053 0.98488 0.91570 0.93067 1.25734 0.93848 0.95944 1.02260 1.69991 1.44737 1.07630 1.32977 0.85410 0.78816 0.77691 0.78634 1.19167 1.19715 1.19852 0.89053 0.91254 0.88301 0.75126 0.89601 0.91443 0.92712 0.90325 0.92405 0.92041 0.89574 0.92586 0.91971 0.90250 0.91886 0.89021 0.88183 0.75826 0.93175 0.95028 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.32 9.34 71.24 0.67 -2.65 16 2 C 0.14 6.01 7.01 42.14 0.30 6.31 16 3 C -0.33 -11.87 6.13 -20.15 -0.12 -11.99 16 4 C 0.61 19.27 7.81 86.66 0.68 19.95 16 5 O -0.58 -21.64 14.44 -4.05 -0.06 -21.70 16 6 N -0.70 -15.78 5.35 -443.01 -2.37 -18.15 16 7 C 0.12 2.35 4.25 45.58 0.19 2.54 16 8 H 0.11 2.30 7.46 -2.39 -0.02 2.28 16 9 C -0.17 -2.99 7.72 31.18 0.24 -2.74 16 10 C 0.07 1.03 2.82 31.12 0.09 1.12 16 11 H 0.10 1.27 5.54 -2.39 -0.01 1.25 16 12 O -0.38 -6.23 10.00 -148.98 -1.49 -7.72 16 13 C 0.10 1.20 1.11 -10.79 -0.01 1.19 16 14 C -0.18 -2.05 8.39 71.98 0.60 -1.45 16 15 C -0.14 -1.47 8.84 71.98 0.64 -0.83 16 16 C -0.18 -1.68 8.38 71.98 0.60 -1.08 16 17 C -0.13 -1.84 7.66 31.12 0.24 -1.60 16 18 C 0.08 2.64 11.50 85.65 0.99 3.63 16 19 N -0.34 -14.61 12.50 -56.28 -0.70 -15.31 16 20 N -0.34 -15.77 3.56 -336.70 -1.20 -16.97 16 21 C 0.27 13.93 5.78 85.63 0.49 14.42 16 22 C -0.56 -30.90 9.39 25.60 0.24 -30.66 16 23 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 24 C 0.02 1.29 5.46 84.65 0.46 1.75 16 25 N -0.92 -51.45 13.29 21.45 0.28 -51.16 16 26 Si 0.97 42.90 29.54 68.60 2.03 44.93 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 29 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 30 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.07 2.72 7.71 -2.39 -0.02 2.71 16 32 H 0.10 3.58 6.50 -2.39 -0.02 3.57 16 33 H 0.41 7.11 7.68 -92.71 -0.71 6.40 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.06 0.70 7.02 -2.39 -0.02 0.69 16 39 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 0.57 6.24 -2.39 -0.01 0.56 16 43 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.10 1.34 8.12 -2.39 -0.02 1.32 16 47 H 0.23 4.82 7.50 -2.91 -0.02 4.80 16 48 H 0.05 2.61 7.64 -2.38 -0.02 2.60 16 49 H 0.03 1.77 8.14 -2.38 -0.02 1.75 16 50 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -68.12 406.83 3.00 -65.11 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.23 Total: 23.10 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 6.29 Total: -2.13 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -3.99 Total: -101.59 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -1.55 Total: -29.42 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -68.12 3.00 -65.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892255775.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.175 kcal (2) G-P(sol) polarization free energy of solvation -68.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds