Wall clock time and date at job start Tue Mar 31 2020 19:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47699 * 2 1 4 4 N 1.34618 * 125.89532 * 265.31348 * 3 2 1 5 5 H 0.97008 * 124.81284 * 359.97438 * 4 3 2 6 6 C 1.36426 * 110.38459 * 180.14083 * 4 3 2 7 7 C 1.50698 * 125.46155 * 179.85122 * 6 4 3 8 8 N 1.46895 * 109.47017 * 274.71169 * 7 6 4 9 9 C 1.46911 * 111.00117 * 179.97438 * 8 7 6 10 10 C 1.53036 * 109.46005 * 205.00493 * 9 8 7 11 11 C 1.53191 * 109.31166 * 178.61420 * 10 9 8 12 12 N 1.46926 * 108.89452 * 54.56289 * 11 10 9 13 13 C 1.36934 * 120.63630 * 126.46229 * 12 11 10 14 14 H 1.08000 * 119.99464 * 331.92669 * 13 12 11 15 15 C 1.38810 * 120.00385 * 151.92945 * 13 12 11 16 16 N 1.31619 * 119.99689 * 343.17004 * 15 13 12 17 17 Si 1.86795 * 119.99988 * 163.17171 * 15 13 12 18 18 H 1.48503 * 109.47611 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47271 * 120.00121 * 17 15 13 20 20 H 1.48496 * 109.47355 * 239.99904 * 17 15 13 21 21 C 1.46973 * 118.71425 * 306.64410 * 12 11 10 22 22 C 1.53043 * 109.45721 * 84.93214 * 9 8 7 23 23 C 1.34435 * 109.08062 * 359.58331 * 6 4 3 24 24 C 1.37843 * 125.89490 * 84.99341 * 3 2 1 25 25 C 1.47104 * 127.02551 * 359.97438 * 24 3 2 26 26 O 1.21552 * 120.00096 * 0.02562 * 25 24 3 27 27 O 1.34793 * 119.99851 * 180.02562 * 25 24 3 28 28 C 1.45199 * 116.99898 * 179.97438 * 27 25 24 29 29 H 1.09004 * 109.46852 * 59.99855 * 1 2 3 30 30 H 1.08998 * 109.47807 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47352 * 300.00360 * 1 2 3 32 32 H 1.08999 * 109.47540 * 239.99293 * 2 1 3 33 33 H 1.09004 * 109.46852 * 120.00145 * 2 1 3 34 34 H 1.09009 * 109.47065 * 154.71550 * 7 6 4 35 35 H 1.08998 * 109.46916 * 34.71845 * 7 6 4 36 36 H 1.00900 * 111.00570 * 303.95433 * 8 7 6 37 37 H 1.08996 * 109.45521 * 324.97592 * 9 8 7 38 38 H 1.09001 * 109.50071 * 58.66209 * 10 9 8 39 39 H 1.09005 * 109.49477 * 298.56545 * 10 9 8 40 40 H 1.09000 * 109.58954 * 174.41929 * 11 10 9 41 41 H 1.08996 * 109.58649 * 294.70243 * 11 10 9 42 42 H 0.97000 * 119.99637 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.46458 * 293.56938 * 21 12 11 44 44 H 1.08992 * 109.71060 * 173.28601 * 21 12 11 45 45 H 1.08995 * 109.49931 * 301.34280 * 22 9 8 46 46 H 1.09003 * 109.49592 * 61.43719 * 22 9 8 47 47 H 1.08007 * 126.81070 * 180.21246 * 23 6 4 48 48 H 1.08993 * 109.47240 * 179.97438 * 28 27 25 49 49 H 1.09000 * 109.47246 * 300.00667 * 28 27 25 50 50 H 1.09001 * 109.47058 * 60.00139 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3796 2.1352 -1.0869 5 1 2.3436 1.8079 -1.9994 6 6 2.7928 3.3834 -0.7230 7 6 3.2601 4.4598 -1.6684 8 7 4.6903 4.2775 -1.9495 9 6 5.1819 5.3111 -2.8706 10 6 6.4095 4.7858 -3.6181 11 6 6.8984 5.8531 -4.6023 12 7 7.1283 7.1059 -3.8701 13 6 8.3326 7.7522 -3.9540 14 1 9.2343 7.1907 -4.1491 15 6 8.3946 9.1290 -3.7881 16 7 7.2994 9.8530 -3.8816 17 14 10.0323 9.9541 -3.4325 18 1 11.1028 8.9264 -3.3768 19 1 10.3385 10.9307 -4.5085 20 1 9.9575 10.6613 -2.1289 21 6 6.0421 7.6499 -3.0429 22 6 5.5629 6.5625 -2.0761 23 6 2.7106 3.5013 0.6136 24 6 2.2100 2.2152 1.1124 25 6 1.9498 1.8490 2.5132 26 8 1.5324 0.7399 2.7839 27 8 2.1742 2.7432 3.4964 28 6 1.8948 2.3133 4.8549 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 3.1010 5.4375 -1.2132 35 1 2.6959 4.3962 -2.5989 36 1 5.2283 4.2680 -1.0959 37 1 4.3995 5.5605 -3.5873 38 1 6.1431 3.8813 -4.1650 39 1 7.2012 4.5597 -2.9037 40 1 7.8289 5.5244 -5.0653 41 1 6.1438 6.0130 -5.3724 42 1 7.3428 10.8151 -3.7660 43 1 5.2165 7.9583 -3.6843 44 1 6.4053 8.5077 -2.4770 45 1 4.6939 6.9225 -1.5255 46 1 6.3625 6.3197 -1.3763 47 1 2.9635 4.3700 1.2034 48 1 2.1181 3.1257 5.5463 49 1 0.8428 2.0413 4.9407 50 1 2.5142 1.4498 5.0973 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894234188.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:12 Heat of formation + Delta-G solvation = -52.356468 kcal Electronic energy + Delta-G solvation = -28745.993821 eV Core-core repulsion = 24773.102834 eV Total energy + Delta-G solvation = -3972.890986 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.41938 -40.84490 -39.59790 -37.36718 -36.72781 -34.79421 -33.87490 -32.30193 -31.78196 -31.42427 -29.52844 -28.53172 -26.89942 -25.47163 -24.86658 -23.75126 -23.08056 -22.79186 -21.40465 -20.85842 -20.61161 -18.88106 -18.44409 -17.56096 -17.24481 -16.92124 -16.87475 -16.24899 -16.05403 -15.57993 -15.34253 -15.24542 -15.17734 -14.77135 -14.71371 -14.60575 -14.41402 -14.08716 -13.88745 -13.82048 -13.52760 -13.30466 -13.04658 -12.97901 -12.88709 -12.66941 -12.57608 -12.37923 -12.32335 -12.11513 -11.93906 -11.90747 -11.76888 -11.69440 -11.42600 -11.37558 -11.15327 -10.56408 -9.91716 -9.39806 -9.08136 -8.66435 -7.87430 -5.32483 0.45295 1.28539 1.45228 1.47546 1.57787 1.79552 2.24981 2.31933 2.51126 3.23773 3.33784 3.68716 3.72449 3.84382 3.99466 4.05077 4.16030 4.19814 4.27090 4.34608 4.36620 4.38917 4.45228 4.52142 4.58274 4.64742 4.68070 4.71878 4.73145 4.80954 4.89652 4.92427 4.97318 5.05277 5.07537 5.21130 5.23867 5.28329 5.31201 5.41304 5.48627 5.52429 5.65060 5.69718 5.74581 5.94117 6.08186 6.40058 6.44331 6.51583 6.89846 7.15760 7.87737 8.38589 9.18779 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018340 B = 0.002119 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.369805 B =13211.251396 C =14230.344345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.063 4.063 3 C 0.134 3.866 4 N -0.517 5.517 5 H 0.433 0.567 6 C 0.027 3.973 7 C 0.126 3.874 8 N -0.677 5.677 9 C 0.108 3.892 10 C -0.103 4.103 11 C 0.140 3.860 12 N -0.612 5.612 13 C -0.260 4.260 14 H 0.065 0.935 15 C -0.052 4.052 16 N -0.935 5.935 17 Si 0.965 3.035 18 H -0.267 1.267 19 H -0.292 1.292 20 H -0.290 1.290 21 C 0.180 3.820 22 C -0.152 4.152 23 C -0.150 4.150 24 C -0.261 4.261 25 C 0.537 3.463 26 O -0.543 6.543 27 O -0.366 6.366 28 C 0.032 3.968 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.343 0.657 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.015 0.985 42 H 0.249 0.751 43 H -0.004 1.004 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.050 0.950 47 H 0.150 0.850 48 H 0.126 0.874 49 H 0.062 0.938 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.716 -19.144 10.137 26.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.101 4.101 3 C 0.012 3.988 4 N -0.113 5.113 5 H 0.273 0.727 6 C -0.082 4.082 7 C -0.003 4.003 8 N -0.307 5.307 9 C -0.002 4.002 10 C -0.143 4.143 11 C 0.014 3.986 12 N -0.336 5.336 13 C -0.390 4.390 14 H 0.082 0.918 15 C -0.248 4.248 16 N -0.582 5.582 17 Si 0.793 3.207 18 H -0.191 1.191 19 H -0.219 1.219 20 H -0.217 1.217 21 C 0.054 3.946 22 C -0.193 4.193 23 C -0.173 4.173 24 C -0.269 4.269 25 C 0.386 3.614 26 O -0.435 6.435 27 O -0.283 6.283 28 C -0.062 4.062 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.117 0.883 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.162 0.838 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.033 0.967 42 H 0.058 0.942 43 H 0.015 0.985 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.167 0.833 48 H 0.145 0.855 49 H 0.081 0.919 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.940 -19.765 9.596 26.570 hybrid contribution 0.849 1.665 0.641 1.976 sum -14.091 -18.100 10.237 25.119 Atomic orbital electron populations 1.21630 0.93310 1.02964 1.01560 1.20386 0.97129 0.87793 1.04795 1.20801 0.97997 0.94834 0.85186 1.41460 1.49579 1.10865 1.09356 0.72707 1.20055 1.06640 0.87377 0.94161 1.20434 0.89241 0.93421 0.97214 1.60750 1.02695 1.48598 1.18676 1.21287 0.96566 0.88416 0.93882 1.21792 0.96568 0.97790 0.98146 1.21078 0.98127 0.86293 0.93078 1.44346 1.12352 1.24759 1.52101 1.19535 0.86258 0.89584 1.43625 0.91756 1.25784 0.99979 0.97019 1.01970 1.70184 1.28610 1.04933 1.54425 0.85246 0.80187 0.78264 0.77001 1.19148 1.21907 1.21713 1.20501 0.88622 0.94287 0.91205 1.22654 0.99951 0.97960 0.98735 1.21981 1.04930 0.97326 0.93113 1.19459 1.20608 0.97759 0.89069 1.20344 0.73288 0.81865 0.85927 1.90768 1.45176 1.22851 1.84746 1.86576 1.79370 1.44239 1.18093 1.23486 1.01760 1.02776 0.78134 0.91995 0.90393 0.94142 0.88253 0.89474 0.92359 0.89050 0.83843 0.91009 0.90169 0.93207 0.92941 0.96685 0.94165 0.98547 0.93276 0.91742 0.93169 0.83253 0.85546 0.91884 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.89 71.98 0.71 -1.16 16 2 C -0.06 -0.93 5.81 29.85 0.17 -0.76 16 3 C 0.13 2.51 6.47 42.04 0.27 2.78 16 4 N -0.52 -8.20 5.89 -170.38 -1.00 -9.20 16 5 H 0.43 4.51 8.96 -92.70 -0.83 3.68 16 6 C 0.03 0.52 6.63 40.97 0.27 0.80 16 7 C 0.13 2.43 6.00 85.56 0.51 2.94 16 8 N -0.68 -15.56 6.24 -495.43 -3.09 -18.65 16 9 C 0.11 3.15 2.43 44.94 0.11 3.26 16 10 C -0.10 -3.28 5.69 30.67 0.17 -3.11 16 11 C 0.14 5.64 6.51 86.36 0.56 6.21 16 12 N -0.61 -30.41 3.00 -699.01 -2.10 -32.51 16 13 C -0.26 -14.30 9.58 84.03 0.81 -13.50 16 14 H 0.06 3.48 7.88 -2.91 -0.02 3.45 16 15 C -0.05 -2.93 4.92 84.86 0.42 -2.51 16 16 N -0.94 -55.35 11.20 21.65 0.24 -55.10 16 17 Si 0.96 44.99 29.59 68.60 2.03 47.02 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 20 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 21 C 0.18 8.51 5.30 86.35 0.46 8.97 16 22 C -0.15 -5.34 5.33 30.67 0.16 -5.18 16 23 C -0.15 -3.31 10.89 23.62 0.26 -3.05 16 24 C -0.26 -6.12 6.33 -18.82 -0.12 -6.24 16 25 C 0.54 13.65 7.95 70.15 0.56 14.21 16 26 O -0.54 -14.90 14.66 19.67 0.29 -14.61 16 27 O -0.37 -8.46 10.47 -57.05 -0.60 -9.06 16 28 C 0.03 0.49 10.57 113.37 1.20 1.69 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.04 0.74 8.01 -2.38 -0.02 0.72 16 32 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 1.60 6.79 -2.39 -0.02 1.59 16 34 H 0.06 1.17 7.41 -2.38 -0.02 1.15 16 35 H 0.09 1.57 8.05 -2.39 -0.02 1.55 16 36 H 0.34 8.22 8.47 -89.69 -0.76 7.46 16 37 H 0.07 2.12 7.80 -2.39 -0.02 2.10 16 38 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.05 2.09 7.93 -2.39 -0.02 2.08 16 41 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 43 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.05 2.67 6.07 -2.39 -0.01 2.66 16 45 H 0.06 2.01 7.42 -2.39 -0.02 1.99 16 46 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 48 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 50 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -68.74 403.40 1.66 -67.09 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -0.64 Total: 19.68 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 6.53 Total: 5.35 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -5.95 Total: -115.47 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.31 Total: -23.67 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -68.74 1.66 -67.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894234188.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.733 kcal (2) G-P(sol) polarization free energy of solvation -68.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds