Wall clock time and date at job start Tue Mar 31 2020 19:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50699 * 109.47181 * 2 1 4 4 N 1.34622 * 125.89995 * 264.97261 * 3 2 1 5 5 H 0.97003 * 124.80882 * 0.04638 * 4 3 2 6 6 C 1.36426 * 110.38436 * 180.02562 * 4 3 2 7 7 C 1.50703 * 125.45890 * 179.97438 * 6 4 3 8 8 N 1.46899 * 109.47107 * 85.00141 * 7 6 4 9 9 C 1.46957 * 111.00227 * 293.80108 * 8 7 6 10 10 C 1.53051 * 109.36288 * 176.81101 * 9 8 7 11 11 N 1.46948 * 109.36666 * 58.40430 * 10 9 8 12 12 C 1.46894 * 111.00364 * 176.80971 * 11 10 9 13 13 C 1.50700 * 109.47149 * 293.79659 * 12 11 10 14 14 H 1.08007 * 120.00009 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00229 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00132 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99999 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47189 * 90.00236 * 17 15 13 19 19 H 1.48505 * 109.47430 * 210.00248 * 17 15 13 20 20 H 1.48506 * 109.47234 * 330.00293 * 17 15 13 21 21 C 1.46957 * 110.87760 * 300.67709 * 11 10 9 22 22 C 1.46952 * 110.99951 * 169.99745 * 8 7 6 23 23 C 1.34435 * 109.08611 * 0.23393 * 6 4 3 24 24 C 1.37852 * 125.89586 * 84.99980 * 3 2 1 25 25 C 1.47110 * 127.02031 * 359.97438 * 24 3 2 26 26 O 1.21548 * 120.00561 * 0.02562 * 25 24 3 27 27 O 1.34789 * 119.99650 * 179.97438 * 25 24 3 28 28 C 1.45205 * 116.99818 * 179.97438 * 27 25 24 29 29 H 1.08993 * 109.47258 * 59.99875 * 1 2 3 30 30 H 1.09007 * 109.47155 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47403 * 299.99543 * 1 2 3 32 32 H 1.08995 * 109.47479 * 239.99924 * 2 1 3 33 33 H 1.09004 * 109.47657 * 120.00003 * 2 1 3 34 34 H 1.09002 * 109.47152 * 325.00228 * 7 6 4 35 35 H 1.09001 * 109.46980 * 205.00329 * 7 6 4 36 36 H 1.08994 * 109.48679 * 296.77747 * 9 8 7 37 37 H 1.09002 * 109.48992 * 56.84223 * 9 8 7 38 38 H 1.09000 * 109.49159 * 298.42901 * 10 9 8 39 39 H 1.08999 * 109.48373 * 178.36958 * 10 9 8 40 40 H 1.09007 * 109.46924 * 53.79502 * 12 11 10 41 41 H 1.08998 * 109.48004 * 173.79663 * 12 11 10 42 42 H 0.96993 * 119.99951 * 179.97438 * 16 15 13 43 43 H 1.09004 * 109.49248 * 299.35343 * 21 11 10 44 44 H 1.09002 * 109.48992 * 179.28945 * 21 11 10 45 45 H 1.08999 * 109.49386 * 303.15691 * 22 8 7 46 46 H 1.08999 * 109.48626 * 63.22568 * 22 8 7 47 47 H 1.08003 * 126.81798 * 179.77118 * 23 6 4 48 48 H 1.08996 * 109.46779 * 60.00973 * 28 27 25 49 49 H 1.09005 * 109.46596 * 180.02562 * 28 27 25 50 50 H 1.08996 * 109.47321 * 300.00260 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3855 2.1332 -1.0863 5 1 2.3537 1.8045 -1.9984 6 6 2.7941 3.3830 -0.7227 7 6 3.2634 4.4588 -1.6679 8 7 2.1028 5.1928 -2.1896 9 6 1.2693 4.3275 -3.0359 10 6 0.0325 5.1044 -3.4934 11 7 0.4553 6.3049 -4.2278 12 6 -0.7053 7.0389 -4.7494 13 6 -1.3965 6.2061 -5.7981 14 1 -1.0123 5.2290 -6.0514 15 6 -2.5200 6.6910 -6.4334 16 7 -2.9882 7.8806 -6.1246 17 14 -3.3771 5.6584 -7.7328 18 1 -4.4116 4.8103 -7.0880 19 1 -4.0202 6.5514 -8.7300 20 1 -2.3809 4.7926 -8.4134 21 6 1.2887 7.1702 -3.3814 22 6 2.5255 6.3935 -2.9239 23 6 2.7164 3.4993 0.6143 24 6 2.2099 2.2153 1.1125 25 6 1.9498 1.8488 2.5133 26 8 1.5325 0.7398 2.7840 27 8 2.1752 2.7427 3.4966 28 6 1.8959 2.3126 4.8551 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8072 4.0034 -2.4956 35 1 3.9203 5.1478 -1.1369 36 1 1.8423 4.0103 -3.9071 37 1 0.9586 3.4518 -2.4661 38 1 -0.5548 5.3981 -2.6234 39 1 -0.5725 4.4738 -4.1449 40 1 -1.3995 7.2472 -3.9351 41 1 -0.3726 7.9777 -5.1922 42 1 -3.7783 8.2218 -6.5719 43 1 0.7157 7.4876 -2.5101 44 1 1.5994 8.0459 -3.9513 45 1 3.1305 7.0240 -2.2724 46 1 3.1128 6.0997 -3.7938 47 1 2.9735 4.3664 1.2046 48 1 2.5148 1.4487 5.0972 49 1 2.1192 3.1252 5.5465 50 1 0.8437 2.0415 4.9413 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895460091.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:08 Heat of formation + Delta-G solvation = -57.329679 kcal Electronic energy + Delta-G solvation = -29275.349034 eV Core-core repulsion = 25302.242393 eV Total energy + Delta-G solvation = -3973.106641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.47938 -40.87693 -40.01232 -37.35735 -36.74964 -34.84053 -34.32104 -32.38229 -31.81825 -31.23779 -29.34385 -28.53719 -27.19896 -25.31740 -24.82643 -24.50113 -23.32433 -22.76067 -21.34405 -20.73237 -20.52724 -18.51216 -18.48457 -17.56442 -17.38750 -17.15458 -16.91647 -16.50227 -16.03164 -15.84617 -15.59528 -15.53268 -15.25841 -15.14079 -14.77831 -14.51368 -14.43808 -14.05247 -14.04713 -13.82543 -13.45899 -13.42966 -13.15928 -13.01045 -12.92049 -12.71965 -12.68514 -12.48283 -12.31753 -12.26133 -12.12790 -11.93812 -11.91424 -11.68708 -11.52913 -11.41158 -11.18577 -10.63727 -9.89123 -9.37819 -9.10803 -9.01291 -8.22122 -6.32759 0.45575 1.29541 1.39879 1.41281 1.52737 1.79105 2.26173 2.31558 2.38695 3.05925 3.10245 3.28886 3.64300 3.76778 3.95768 4.03401 4.15021 4.19042 4.23514 4.32318 4.35754 4.36996 4.37877 4.40268 4.46379 4.51342 4.62104 4.66528 4.72497 4.72599 4.82587 4.85327 4.93006 4.96532 5.01675 5.03125 5.04320 5.20514 5.22578 5.26998 5.29697 5.49928 5.61865 5.73245 5.92186 6.00204 6.03835 6.08322 6.31917 6.47309 6.60919 6.83104 6.90945 7.37120 8.89251 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014071 B = 0.002514 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.480927 B =11136.717603 C =11929.419144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 C 0.131 3.869 4 N -0.530 5.530 5 H 0.428 0.572 6 C 0.023 3.977 7 C 0.127 3.873 8 N -0.547 5.547 9 C 0.072 3.928 10 C 0.070 3.930 11 N -0.542 5.542 12 C 0.208 3.792 13 C -0.523 4.523 14 H 0.064 0.936 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.970 3.030 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.262 1.262 21 C 0.051 3.949 22 C 0.073 3.927 23 C -0.133 4.133 24 C -0.260 4.260 25 C 0.537 3.463 26 O -0.544 6.544 27 O -0.365 6.365 28 C 0.032 3.968 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.119 0.881 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.007 0.993 39 H 0.066 0.934 40 H -0.044 1.044 41 H 0.005 0.995 42 H 0.265 0.735 43 H 0.017 0.983 44 H 0.073 0.927 45 H 0.106 0.894 46 H 0.046 0.954 47 H 0.155 0.845 48 H 0.063 0.937 49 H 0.128 0.872 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.833 -13.771 15.510 26.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 C 0.010 3.990 4 N -0.126 5.126 5 H 0.268 0.732 6 C -0.086 4.086 7 C 0.000 4.000 8 N -0.272 5.272 9 C -0.057 4.057 10 C -0.059 4.059 11 N -0.266 5.266 12 C 0.082 3.918 13 C -0.561 4.561 14 H 0.082 0.918 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.795 3.205 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.187 1.187 21 C -0.077 4.077 22 C -0.054 4.054 23 C -0.157 4.157 24 C -0.269 4.269 25 C 0.386 3.614 26 O -0.437 6.437 27 O -0.281 6.281 28 C -0.062 4.062 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.137 0.863 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.026 0.974 39 H 0.085 0.915 40 H -0.026 1.026 41 H 0.023 0.977 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.091 0.909 45 H 0.124 0.876 46 H 0.065 0.935 47 H 0.173 0.827 48 H 0.082 0.918 49 H 0.146 0.854 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.616 -13.930 15.432 26.001 hybrid contribution -1.203 -0.051 -0.681 1.383 sum 14.413 -13.981 14.751 24.916 Atomic orbital electron populations 1.21638 0.93921 1.02865 1.01310 1.20366 0.96599 0.88044 1.04905 1.20777 0.97923 0.95013 0.85322 1.41649 1.50422 1.11337 1.09194 0.73187 1.20128 1.07450 0.86414 0.94607 1.20644 0.91072 0.92590 0.95716 1.62140 1.20127 1.07412 1.37555 1.22077 0.93659 0.95080 0.94838 1.21930 0.96357 0.92793 0.94776 1.62238 1.21241 1.07672 1.35496 1.19347 0.86371 0.93241 0.92836 1.21439 1.10512 1.03254 1.20882 0.91798 1.25949 0.97912 0.96349 0.99593 1.70090 1.24331 1.19052 1.44099 0.85370 0.78506 0.78337 0.78330 1.19892 1.20741 1.18655 1.22207 0.94896 0.96071 0.94563 1.22089 0.95173 0.91343 0.96841 1.21940 1.03948 0.96729 0.93050 1.19498 1.20315 0.98059 0.88987 1.20347 0.73273 0.81846 0.85949 1.90769 1.45144 1.23002 1.84753 1.86570 1.79296 1.44196 1.18032 1.23489 1.01616 1.02876 0.78172 0.92668 0.90319 0.94271 0.88200 0.89079 0.92283 0.86318 0.93635 0.90206 0.97434 0.91528 1.02646 0.97688 0.92667 0.96435 0.90856 0.87626 0.93535 0.82723 0.91779 0.85352 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.89 71.98 0.71 -1.83 16 2 C -0.06 -1.03 5.81 29.84 0.17 -0.86 16 3 C 0.13 2.66 6.47 42.04 0.27 2.93 16 4 N -0.53 -9.12 4.93 -170.37 -0.84 -9.96 16 5 H 0.43 5.30 8.65 -92.71 -0.80 4.50 16 6 C 0.02 0.44 5.86 40.98 0.24 0.68 16 7 C 0.13 2.22 5.49 85.56 0.47 2.68 16 8 N -0.55 -13.58 4.70 -900.29 -4.23 -17.81 16 9 C 0.07 2.01 5.43 86.31 0.47 2.47 16 10 C 0.07 2.74 5.43 86.31 0.47 3.21 16 11 N -0.54 -23.44 4.70 -900.30 -4.23 -27.67 16 12 C 0.21 11.31 4.72 85.56 0.40 11.71 16 13 C -0.52 -29.70 8.47 25.60 0.22 -29.48 16 14 H 0.06 3.53 7.13 -2.91 -0.02 3.50 16 15 C 0.00 0.00 5.46 84.65 0.46 0.46 16 16 N -0.94 -56.81 13.29 21.45 0.28 -56.52 16 17 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 21 C 0.05 1.81 5.61 86.31 0.48 2.30 16 22 C 0.07 1.85 5.61 86.31 0.48 2.33 16 23 C -0.13 -2.96 10.89 23.62 0.26 -2.70 16 24 C -0.26 -6.35 6.33 -18.82 -0.12 -6.47 16 25 C 0.54 14.12 7.95 70.15 0.56 14.67 16 26 O -0.54 -15.59 14.66 19.68 0.29 -15.30 16 27 O -0.36 -8.52 10.47 -57.00 -0.60 -9.11 16 28 C 0.03 0.50 10.57 113.37 1.20 1.70 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.04 0.89 8.01 -2.38 -0.02 0.88 16 32 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.77 6.79 -2.38 -0.02 1.75 16 34 H 0.06 0.87 8.12 -2.39 -0.02 0.85 16 35 H 0.12 1.65 8.02 -2.39 -0.02 1.63 16 36 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.99 6.14 -2.39 -0.01 1.98 16 38 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.07 2.80 6.79 -2.39 -0.02 2.79 16 40 H -0.04 -2.65 8.12 -2.38 -0.02 -2.67 16 41 H 0.01 0.29 8.03 -2.39 -0.02 0.27 16 42 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 43 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 45 H 0.11 2.05 8.07 -2.39 -0.02 2.03 16 46 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 48 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.13 1.20 8.14 -2.38 -0.02 1.18 16 50 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -72.84 403.31 -0.42 -73.27 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.13 Total: 13.16 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 6.75 Total: 3.82 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -9.02 Total: -111.97 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.31 Total: -24.41 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -72.84 -0.42 -73.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895460091.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.939 kcal (2) G-P(sol) polarization free energy of solvation -72.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds