Wall clock time and date at job start Tue Mar 31 2020 19:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47024 * 2 1 4 4 C 1.53004 * 109.44921 * 299.13074 * 3 2 1 5 5 O 1.42897 * 109.47117 * 304.64907 * 4 3 2 6 6 C 1.53037 * 109.45844 * 179.16962 * 3 2 1 7 7 C 1.53192 * 109.31405 * 301.33860 * 6 3 2 8 8 N 1.46926 * 108.77784 * 305.37112 * 7 6 3 9 9 C 1.34777 * 120.63112 * 233.58304 * 8 7 6 10 10 O 1.21595 * 120.00405 * 184.18606 * 9 8 7 11 11 C 1.47434 * 119.99847 * 4.18752 * 9 8 7 12 12 C 1.41293 * 126.41076 * 311.58450 * 11 9 8 13 13 N 1.30456 * 108.01863 * 179.85565 * 12 11 9 14 14 N 1.39932 * 108.89585 * 0.41179 * 13 12 11 15 15 C 1.46497 * 125.75249 * 179.73905 * 14 13 12 16 16 C 1.50697 * 109.47092 * 269.99628 * 15 14 13 17 17 H 1.08005 * 119.99867 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00482 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99605 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00203 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46850 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46688 * 120.00151 * 20 18 16 23 23 H 1.48493 * 109.46642 * 239.99987 * 20 18 16 24 24 C 1.34264 * 108.49270 * 359.73370 * 14 13 12 25 25 C 1.50697 * 126.28943 * 180.02562 * 24 14 13 26 26 C 1.46926 * 118.73966 * 53.60359 * 8 7 6 27 27 C 1.53045 * 109.46300 * 59.09903 * 3 2 1 28 28 H 1.08997 * 109.46798 * 303.15307 * 1 2 3 29 29 H 1.08997 * 109.47092 * 63.15103 * 1 2 3 30 30 H 1.09003 * 109.47170 * 183.15378 * 1 2 3 31 31 H 1.08998 * 109.47286 * 239.99761 * 2 1 3 32 32 H 1.09000 * 109.46676 * 119.99935 * 2 1 3 33 33 H 1.09006 * 109.46426 * 64.64609 * 4 3 2 34 34 H 1.08994 * 109.46884 * 184.64460 * 4 3 2 35 35 H 0.96701 * 114.00201 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.50185 * 61.29677 * 6 3 2 37 37 H 1.09007 * 109.50032 * 181.39109 * 6 3 2 38 38 H 1.09000 * 109.58845 * 185.57722 * 7 6 3 39 39 H 1.09003 * 109.58166 * 65.15590 * 7 6 3 40 40 H 1.07997 * 125.99117 * 0.02562 * 12 11 9 41 41 H 1.09006 * 109.47457 * 29.99494 * 15 14 13 42 42 H 1.09001 * 109.47276 * 149.99674 * 15 14 13 43 43 H 0.96998 * 119.99999 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.47056 * 269.98062 * 25 24 14 45 45 H 1.09009 * 109.47364 * 29.97073 * 25 24 14 46 46 H 1.09000 * 109.47467 * 149.97399 * 25 24 14 47 47 H 1.08997 * 109.58324 * 186.60788 * 26 8 7 48 48 H 1.08994 * 109.58683 * 66.17765 * 26 8 7 49 49 H 1.08999 * 109.49736 * 178.60796 * 27 3 2 50 50 H 1.08999 * 109.49301 * 298.70256 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5477 2.1569 -1.2602 5 8 1.9493 1.4170 -2.4149 6 6 3.5702 1.4422 0.0209 7 6 4.0598 0.6962 1.2661 8 7 3.4401 1.3002 2.4535 9 6 4.1990 1.7247 3.4833 10 8 3.6711 2.1527 4.4916 11 6 5.6692 1.6701 3.3872 12 6 6.4417 0.5641 2.9672 13 7 7.6991 0.9084 3.0158 14 7 7.7902 2.2283 3.4716 15 6 9.0309 2.9816 3.6698 16 6 9.5261 2.7725 5.0776 17 1 8.9722 2.1412 5.7567 18 6 10.6868 3.3863 5.4986 19 7 11.3615 4.1546 4.6715 20 14 11.3010 3.1264 7.2435 21 1 10.3682 2.2260 7.9675 22 1 12.6529 2.5132 7.2061 23 1 11.3697 4.4340 7.9438 24 6 6.5489 2.6878 3.6965 25 6 6.1833 4.0623 4.1946 26 6 1.9775 1.4323 2.4971 27 6 1.5113 2.1702 1.2382 28 1 -0.3633 0.5620 0.8604 29 1 -0.3633 0.4641 -0.9169 30 1 -0.3634 -1.0261 0.0565 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.4603 2.2294 -1.2353 34 1 1.9777 3.1575 -1.3021 35 1 1.6703 1.8124 -3.2521 36 1 3.9463 0.9443 -0.8728 37 1 3.9340 2.4695 0.0459 38 1 5.1443 0.7780 1.3383 39 1 3.7741 -0.3536 1.1989 40 1 6.0583 -0.3968 2.6573 41 1 9.7847 2.6327 2.9639 42 1 8.8422 4.0424 3.5048 43 1 12.1783 4.5861 4.9675 44 1 6.1454 4.0559 5.2839 45 1 6.9324 4.7807 3.8614 46 1 5.2078 4.3447 3.7987 47 1 1.6882 1.9999 3.3815 48 1 1.5220 0.4427 2.5303 49 1 1.8943 3.1906 1.2516 50 1 0.4218 2.1905 1.2107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897266371.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:25 Heat of formation + Delta-G solvation = -24.610741 kcal Electronic energy + Delta-G solvation = -30174.324958 eV Core-core repulsion = 26202.637116 eV Total energy + Delta-G solvation = -3971.687841 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.01094 -40.16420 -38.32591 -36.40107 -34.31720 -33.79475 -32.11956 -31.59737 -31.09244 -30.51853 -27.91023 -27.04958 -26.51574 -24.31093 -23.77196 -23.14406 -22.97743 -21.22361 -19.91166 -18.78862 -17.88021 -17.60647 -16.94219 -16.76498 -15.87118 -15.75135 -15.49736 -15.06211 -15.02394 -14.54883 -14.45991 -14.17476 -13.83856 -13.65082 -13.39098 -13.23401 -12.86177 -12.70166 -12.51169 -12.41057 -12.26664 -12.17322 -12.12383 -11.89863 -11.70403 -11.49874 -11.33650 -11.18961 -11.06233 -10.90706 -10.66733 -10.54001 -10.42222 -10.34009 -10.23446 -10.14332 -9.86484 -9.38479 -8.70038 -8.55540 -8.47896 -7.82005 -6.32319 -4.39644 2.34129 2.82999 3.07886 3.18492 3.26500 3.31737 3.43785 3.63226 3.90116 4.26268 4.43857 4.49984 4.63759 4.86869 4.95737 5.02060 5.05851 5.12817 5.15644 5.17527 5.22489 5.25047 5.30871 5.37264 5.44241 5.54462 5.63482 5.64818 5.71770 5.73003 5.78987 5.88353 5.91353 5.97281 6.00372 6.02320 6.05509 6.15486 6.29184 6.36296 6.48911 6.69112 6.82151 6.91877 7.19214 7.33127 7.58957 7.63334 7.79095 7.81998 8.41323 8.56234 8.67015 9.27401 10.75862 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023896 B = 0.002589 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.448248 B =10812.620027 C =11185.834145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.054 4.054 4 C 0.085 3.915 5 O -0.568 6.568 6 C -0.120 4.120 7 C 0.101 3.899 8 N -0.611 5.611 9 C 0.607 3.393 10 O -0.549 6.549 11 C -0.324 4.324 12 C 0.054 3.946 13 N -0.294 5.294 14 N -0.313 5.313 15 C 0.252 3.748 16 C -0.538 4.538 17 H 0.066 0.934 18 C 0.067 3.933 19 N -0.891 5.891 20 Si 0.907 3.093 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.149 3.851 25 C -0.086 4.086 26 C 0.116 3.884 27 C -0.126 4.126 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.376 0.624 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.176 0.824 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.268 0.732 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.091 0.909 48 H 0.066 0.934 49 H 0.068 0.932 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.376 -3.577 -12.982 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.054 4.054 4 C 0.008 3.992 5 O -0.372 6.372 6 C -0.158 4.158 7 C -0.022 4.022 8 N -0.345 5.345 9 C 0.397 3.603 10 O -0.426 6.426 11 C -0.339 4.339 12 C -0.132 4.132 13 N -0.114 5.114 14 N -0.090 5.090 15 C 0.135 3.865 16 C -0.577 4.577 17 H 0.084 0.916 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.734 3.266 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.206 1.206 24 C 0.013 3.987 25 C -0.144 4.144 26 C -0.007 4.007 27 C -0.164 4.164 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.222 0.778 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.193 0.807 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.105 0.895 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.110 0.890 48 H 0.084 0.916 49 H 0.086 0.914 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.835 -3.935 -12.175 23.604 hybrid contribution -0.595 0.481 0.484 0.905 sum -20.430 -3.455 -11.692 23.791 Atomic orbital electron populations 1.21869 0.96211 1.01467 1.01564 1.21579 0.95586 0.95401 1.02519 1.20566 0.95926 0.96041 0.92878 1.22232 0.97651 0.93768 0.85584 1.86479 1.81279 1.53355 1.16137 1.21909 0.94103 1.01555 0.98212 1.21973 0.99973 0.96333 0.83932 1.47913 1.06181 1.62259 1.18122 1.17469 0.85599 0.75514 0.81672 1.90713 1.74538 1.47448 1.29943 1.19597 0.92726 0.97168 1.24453 1.23687 0.90458 0.98614 1.00454 1.77139 1.19060 0.94476 1.20774 1.49281 1.06832 1.08778 1.44118 1.19828 0.77440 0.90326 0.98932 1.21312 1.09280 1.30929 0.96133 0.91572 1.24923 0.95824 0.94411 0.98525 1.69921 1.16874 1.30488 1.35551 0.86276 0.78822 0.78236 0.83266 1.19475 1.20572 1.20569 1.21275 0.85185 0.96487 0.95735 1.20407 1.01637 0.89934 1.02455 1.21479 0.80255 1.00544 0.98406 1.21978 1.00834 0.99675 0.93891 0.92571 0.92866 0.92999 0.91029 0.91577 0.93602 0.93886 0.77786 0.90086 0.91642 0.88218 0.91524 0.80688 0.92548 0.92691 0.92204 0.89492 0.90587 0.90781 0.89016 0.91605 0.91355 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.21 37.16 0.34 -0.72 16 2 C -0.11 -0.92 4.05 -26.73 -0.11 -1.03 16 3 C -0.05 -0.45 0.38 -154.47 -0.06 -0.51 16 4 C 0.09 0.62 5.45 37.16 0.20 0.82 16 5 O -0.57 -4.29 12.27 -35.23 -0.43 -4.72 16 6 C -0.12 -1.20 4.81 -26.61 -0.13 -1.33 16 7 C 0.10 1.13 5.39 -3.71 -0.02 1.11 16 8 N -0.61 -8.02 2.97 -174.04 -0.52 -8.54 16 9 C 0.61 10.44 7.21 -12.52 -0.09 10.35 16 10 O -0.55 -10.98 16.38 5.28 0.09 -10.90 16 11 C -0.32 -6.03 5.17 -105.07 -0.54 -6.57 16 12 C 0.05 0.97 9.62 -16.98 -0.16 0.80 16 13 N -0.29 -6.38 12.50 30.86 0.39 -5.99 16 14 N -0.31 -7.08 3.56 -57.78 -0.21 -7.29 16 15 C 0.25 6.28 5.97 -5.20 -0.03 6.24 16 16 C -0.54 -14.65 9.39 -34.44 -0.32 -14.97 16 17 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 18 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 19 N -0.89 -24.71 13.29 55.43 0.74 -23.97 16 20 Si 0.91 21.06 29.54 -169.99 -5.02 16.04 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 C 0.15 3.04 7.01 -81.60 -0.57 2.47 16 25 C -0.09 -1.53 9.79 36.00 0.35 -1.18 16 26 C 0.12 1.25 5.95 -3.71 -0.02 1.23 16 27 C -0.13 -1.08 4.49 -26.61 -0.12 -1.20 16 28 H 0.06 0.36 6.27 -51.93 -0.33 0.04 16 29 H 0.05 0.36 6.73 -51.93 -0.35 0.01 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.65 7.54 -51.93 -0.39 0.26 16 32 H 0.07 0.56 4.98 -51.93 -0.26 0.31 16 33 H 0.05 0.29 6.77 -51.93 -0.35 -0.07 16 34 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.38 1.32 9.12 45.56 0.42 1.74 16 36 H 0.08 0.82 7.78 -51.93 -0.40 0.41 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.26 4.46 -51.93 -0.23 1.03 16 39 H 0.07 0.65 6.67 -51.93 -0.35 0.30 16 40 H 0.18 2.46 7.52 -52.49 -0.39 2.07 16 41 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.06 1.35 7.02 -51.93 -0.36 0.99 16 43 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 45 H 0.08 1.30 7.05 -51.92 -0.37 0.94 16 46 H 0.07 1.18 7.96 -51.93 -0.41 0.77 16 47 H 0.09 1.13 7.03 -51.93 -0.36 0.76 16 48 H 0.07 0.63 6.71 -51.93 -0.35 0.29 16 49 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.08 0.53 6.41 -51.93 -0.33 0.20 16 LS Contribution 386.16 15.07 5.82 5.82 Total: -1.00 -32.06 386.16 -7.44 -39.50 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.91 Total: 2.80 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -1.38 Total: -2.76 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.40 Total: -45.78 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.35 Total: -15.62 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.06 -7.44 -39.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897266371.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.885 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds