Wall clock time and date at job start Tue Mar 31 2020 19:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47024 * 2 1 4 4 C 1.53004 * 109.44921 * 299.13074 * 3 2 1 5 5 O 1.42897 * 109.47117 * 304.64907 * 4 3 2 6 6 C 1.53037 * 109.45844 * 179.16962 * 3 2 1 7 7 C 1.53192 * 109.31405 * 301.33860 * 6 3 2 8 8 N 1.46926 * 108.77784 * 305.37112 * 7 6 3 9 9 C 1.34777 * 120.63112 * 233.58304 * 8 7 6 10 10 O 1.21595 * 120.00405 * 184.18606 * 9 8 7 11 11 C 1.47434 * 119.99847 * 4.18752 * 9 8 7 12 12 C 1.41293 * 126.41076 * 311.58450 * 11 9 8 13 13 N 1.30456 * 108.01863 * 179.85565 * 12 11 9 14 14 N 1.39932 * 108.89585 * 0.41179 * 13 12 11 15 15 C 1.46497 * 125.75249 * 179.73905 * 14 13 12 16 16 C 1.50697 * 109.47092 * 269.99628 * 15 14 13 17 17 H 1.08005 * 119.99867 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00482 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99605 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00203 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46850 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46688 * 120.00151 * 20 18 16 23 23 H 1.48493 * 109.46642 * 239.99987 * 20 18 16 24 24 C 1.34264 * 108.49270 * 359.73370 * 14 13 12 25 25 C 1.50697 * 126.28943 * 180.02562 * 24 14 13 26 26 C 1.46926 * 118.73966 * 53.60359 * 8 7 6 27 27 C 1.53045 * 109.46300 * 59.09903 * 3 2 1 28 28 H 1.08997 * 109.46798 * 303.15307 * 1 2 3 29 29 H 1.08997 * 109.47092 * 63.15103 * 1 2 3 30 30 H 1.09003 * 109.47170 * 183.15378 * 1 2 3 31 31 H 1.08998 * 109.47286 * 239.99761 * 2 1 3 32 32 H 1.09000 * 109.46676 * 119.99935 * 2 1 3 33 33 H 1.09006 * 109.46426 * 64.64609 * 4 3 2 34 34 H 1.08994 * 109.46884 * 184.64460 * 4 3 2 35 35 H 0.96701 * 114.00201 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.50185 * 61.29677 * 6 3 2 37 37 H 1.09007 * 109.50032 * 181.39109 * 6 3 2 38 38 H 1.09000 * 109.58845 * 185.57722 * 7 6 3 39 39 H 1.09003 * 109.58166 * 65.15590 * 7 6 3 40 40 H 1.07997 * 125.99117 * 0.02562 * 12 11 9 41 41 H 1.09006 * 109.47457 * 29.99494 * 15 14 13 42 42 H 1.09001 * 109.47276 * 149.99674 * 15 14 13 43 43 H 0.96998 * 119.99999 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.47056 * 269.98062 * 25 24 14 45 45 H 1.09009 * 109.47364 * 29.97073 * 25 24 14 46 46 H 1.09000 * 109.47467 * 149.97399 * 25 24 14 47 47 H 1.08997 * 109.58324 * 186.60788 * 26 8 7 48 48 H 1.08994 * 109.58683 * 66.17765 * 26 8 7 49 49 H 1.08999 * 109.49736 * 178.60796 * 27 3 2 50 50 H 1.08999 * 109.49301 * 298.70256 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5477 2.1569 -1.2602 5 8 1.9493 1.4170 -2.4149 6 6 3.5702 1.4422 0.0209 7 6 4.0598 0.6962 1.2661 8 7 3.4401 1.3002 2.4535 9 6 4.1990 1.7247 3.4833 10 8 3.6711 2.1527 4.4916 11 6 5.6692 1.6701 3.3872 12 6 6.4417 0.5641 2.9672 13 7 7.6991 0.9084 3.0158 14 7 7.7902 2.2283 3.4716 15 6 9.0309 2.9816 3.6698 16 6 9.5261 2.7725 5.0776 17 1 8.9722 2.1412 5.7567 18 6 10.6868 3.3863 5.4986 19 7 11.3615 4.1546 4.6715 20 14 11.3010 3.1264 7.2435 21 1 10.3682 2.2260 7.9675 22 1 12.6529 2.5132 7.2061 23 1 11.3697 4.4340 7.9438 24 6 6.5489 2.6878 3.6965 25 6 6.1833 4.0623 4.1946 26 6 1.9775 1.4323 2.4971 27 6 1.5113 2.1702 1.2382 28 1 -0.3633 0.5620 0.8604 29 1 -0.3633 0.4641 -0.9169 30 1 -0.3634 -1.0261 0.0565 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.4603 2.2294 -1.2353 34 1 1.9777 3.1575 -1.3021 35 1 1.6703 1.8124 -3.2521 36 1 3.9463 0.9443 -0.8728 37 1 3.9340 2.4695 0.0459 38 1 5.1443 0.7780 1.3383 39 1 3.7741 -0.3536 1.1989 40 1 6.0583 -0.3968 2.6573 41 1 9.7847 2.6327 2.9639 42 1 8.8422 4.0424 3.5048 43 1 12.1783 4.5861 4.9675 44 1 6.1454 4.0559 5.2839 45 1 6.9324 4.7807 3.8614 46 1 5.2078 4.3447 3.7987 47 1 1.6882 1.9999 3.3815 48 1 1.5220 0.4427 2.5303 49 1 1.8943 3.1906 1.2516 50 1 0.4218 2.1905 1.2107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897266371.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:24 Heat of formation + Delta-G solvation = -46.121170 kcal Electronic energy + Delta-G solvation = -30175.257720 eV Core-core repulsion = 26202.637116 eV Total energy + Delta-G solvation = -3972.620604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.44199 -41.20402 -39.45586 -37.17674 -35.85283 -35.11366 -33.84772 -32.92849 -32.13769 -31.38071 -29.31229 -28.51281 -27.78054 -25.51089 -24.95655 -24.32404 -23.86456 -22.48492 -21.34480 -20.09983 -18.89280 -18.84393 -18.21941 -18.09268 -17.19644 -16.88737 -16.45398 -16.33761 -16.20078 -15.90438 -15.63605 -15.33221 -15.02705 -14.70238 -14.61673 -14.35718 -14.18973 -13.86723 -13.70404 -13.64294 -13.57136 -13.31661 -13.17143 -13.06911 -12.93706 -12.87174 -12.72886 -12.58614 -12.33517 -12.12751 -11.90926 -11.82940 -11.79101 -11.38444 -11.23051 -11.13496 -10.79174 -10.76811 -10.69631 -10.22608 -9.63140 -9.34017 -8.38729 -6.54688 0.79016 1.33877 1.34992 1.38125 1.49029 1.67082 1.97927 2.30134 2.32401 2.93197 3.34763 3.61332 3.71639 3.74312 3.82863 3.99258 4.10998 4.14758 4.19036 4.26838 4.34296 4.42607 4.47642 4.55214 4.57769 4.60434 4.68455 4.71979 4.75714 4.78862 4.84649 4.90065 4.91928 4.94346 4.99399 5.06666 5.08027 5.14288 5.21771 5.33386 5.39814 5.45910 5.48922 5.60318 5.66472 5.73003 5.74964 6.06168 6.42591 6.54855 6.83374 6.99038 7.16439 7.25348 8.69117 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023896 B = 0.002589 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.448248 B =10812.620027 C =11185.834145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C -0.052 4.052 4 C 0.088 3.912 5 O -0.584 6.584 6 C -0.114 4.114 7 C 0.099 3.901 8 N -0.599 5.599 9 C 0.607 3.393 10 O -0.582 6.582 11 C -0.322 4.322 12 C 0.074 3.926 13 N -0.332 5.332 14 N -0.336 5.336 15 C 0.269 3.731 16 C -0.555 4.555 17 H 0.048 0.952 18 C 0.025 3.975 19 N -0.916 5.916 20 Si 0.970 3.030 21 H -0.275 1.275 22 H -0.272 1.272 23 H -0.267 1.267 24 C 0.133 3.867 25 C -0.081 4.081 26 C 0.112 3.888 27 C -0.118 4.118 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.393 0.607 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.216 0.784 41 H 0.032 0.968 42 H 0.052 0.948 43 H 0.275 0.725 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.077 0.923 48 H 0.085 0.915 49 H 0.058 0.942 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.448 -4.339 -13.525 27.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.052 4.052 4 C 0.010 3.990 5 O -0.391 6.391 6 C -0.153 4.153 7 C -0.023 4.023 8 N -0.331 5.331 9 C 0.396 3.604 10 O -0.463 6.463 11 C -0.337 4.337 12 C -0.112 4.112 13 N -0.152 5.152 14 N -0.114 5.114 15 C 0.150 3.850 16 C -0.593 4.593 17 H 0.066 0.934 18 C -0.176 4.176 19 N -0.554 5.554 20 Si 0.794 3.206 21 H -0.200 1.200 22 H -0.197 1.197 23 H -0.192 1.192 24 C -0.002 4.002 25 C -0.139 4.139 26 C -0.010 4.010 27 C -0.156 4.156 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.242 0.758 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.232 0.768 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.110 0.890 47 H 0.095 0.905 48 H 0.103 0.897 49 H 0.077 0.923 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -21.940 -4.700 -12.778 25.821 hybrid contribution -0.058 0.650 0.532 0.842 sum -21.999 -4.050 -12.246 25.501 Atomic orbital electron populations 1.21851 0.95065 1.01895 1.02067 1.21516 0.96539 0.94679 1.01874 1.20547 0.94516 0.96640 0.93536 1.22175 0.98502 0.93282 0.85033 1.86431 1.81661 1.53917 1.17130 1.21842 0.95576 1.00407 0.97431 1.22099 0.99016 0.97632 0.83553 1.47934 1.07168 1.60619 1.17357 1.17278 0.85041 0.75870 0.82208 1.90698 1.74785 1.49335 1.31470 1.19868 0.93739 0.96763 1.23334 1.24307 0.89157 0.99663 0.98081 1.77086 1.21133 0.94435 1.22570 1.49025 1.06706 1.09409 1.46247 1.19352 0.78091 0.90324 0.97216 1.21423 1.09822 1.31110 0.96988 0.93369 1.25694 0.95732 0.93908 1.02283 1.69991 1.17281 1.30869 1.37219 0.85326 0.78181 0.78496 0.78620 1.20014 1.19737 1.19212 1.21792 0.84768 0.97890 0.95763 1.20423 1.02540 0.88928 1.02016 1.21690 0.78499 1.01746 0.99023 1.21927 1.02241 0.98718 0.92707 0.91892 0.92480 0.92717 0.91890 0.91953 0.91982 0.94096 0.75790 0.89956 0.93102 0.89770 0.89267 0.76763 0.94982 0.92988 0.91628 0.90054 0.90478 0.89023 0.90487 0.89696 0.92289 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.21 71.98 0.66 -0.93 16 2 C -0.11 -1.45 4.05 30.59 0.12 -1.32 16 3 C -0.05 -0.75 0.38 -52.15 -0.02 -0.77 16 4 C 0.09 1.05 5.45 71.98 0.39 1.45 16 5 O -0.58 -7.44 12.27 -148.98 -1.83 -9.27 16 6 C -0.11 -2.11 4.81 30.67 0.15 -1.96 16 7 C 0.10 2.04 5.39 86.36 0.47 2.50 16 8 N -0.60 -14.80 2.97 -822.79 -2.45 -17.24 16 9 C 0.61 20.44 7.21 86.67 0.63 21.06 16 10 O -0.58 -23.14 16.38 -4.01 -0.07 -23.21 16 11 C -0.32 -11.92 5.17 -20.15 -0.10 -12.03 16 12 C 0.07 2.61 9.62 85.65 0.82 3.43 16 13 N -0.33 -14.63 12.50 -56.27 -0.70 -15.33 16 14 N -0.34 -15.71 3.56 -336.71 -1.20 -16.91 16 15 C 0.27 13.96 5.97 85.63 0.51 14.47 16 16 C -0.56 -31.11 9.39 25.60 0.24 -30.87 16 17 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 18 C 0.03 1.38 5.46 84.66 0.46 1.84 16 19 N -0.92 -51.37 13.29 21.45 0.28 -51.09 16 20 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 24 C 0.13 5.50 7.01 42.14 0.30 5.80 16 25 C -0.08 -2.93 9.79 71.23 0.70 -2.24 16 26 C 0.11 2.19 5.95 86.36 0.51 2.70 16 27 C -0.12 -1.74 4.49 30.67 0.14 -1.60 16 28 H 0.06 0.58 6.27 -2.39 -0.01 0.56 16 29 H 0.06 0.57 6.73 -2.39 -0.02 0.55 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.98 7.54 -2.39 -0.02 0.96 16 32 H 0.06 0.87 4.98 -2.39 -0.01 0.86 16 33 H 0.06 0.56 6.77 -2.38 -0.02 0.54 16 34 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.39 1.85 9.12 -74.06 -0.68 1.17 16 36 H 0.08 1.53 7.78 -2.39 -0.02 1.51 16 37 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.08 2.02 4.46 -2.39 -0.01 2.01 16 39 H 0.09 1.49 6.67 -2.39 -0.02 1.47 16 40 H 0.22 5.56 7.52 -2.91 -0.02 5.54 16 41 H 0.03 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.05 2.68 7.02 -2.39 -0.02 2.66 16 43 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 44 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 45 H 0.08 2.72 7.05 -2.38 -0.02 2.71 16 46 H 0.09 2.93 7.96 -2.39 -0.02 2.91 16 47 H 0.08 1.79 7.03 -2.39 -0.02 1.77 16 48 H 0.08 1.38 6.71 -2.39 -0.02 1.36 16 49 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.10 1.04 6.41 -2.39 -0.02 1.03 16 Total: -1.00 -70.07 386.16 2.33 -67.73 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.29 Total: 18.38 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 5.98 Total: 1.55 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -4.06 Total: -100.58 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -1.89 Total: -32.48 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -70.07 2.33 -67.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897266371.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.612 kcal (2) G-P(sol) polarization free energy of solvation -70.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds