Wall clock time and date at job start Tue Mar 31 2020 19:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.46862 * 2 1 4 4 O 1.33490 * 126.83131 * 270.16586 * 3 2 1 5 5 N 1.20654 * 113.16025 * 180.31022 * 4 3 2 6 6 C 1.30020 * 112.29902 * 359.72033 * 5 4 3 7 7 C 1.50699 * 127.33129 * 179.97438 * 6 5 4 8 8 C 1.37366 * 126.82773 * 90.00295 * 3 2 1 9 9 C 1.47387 * 128.56684 * 359.97438 * 8 3 2 10 10 O 1.21612 * 120.00307 * 269.70726 * 9 8 3 11 11 N 1.34781 * 120.00193 * 89.70312 * 9 8 3 12 12 C 1.46498 * 120.00446 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.45861 * 325.03158 * 12 11 9 14 14 C 1.53036 * 109.45538 * 85.00572 * 12 11 9 15 15 C 1.53194 * 109.31271 * 181.38445 * 14 12 11 16 16 N 1.46924 * 108.77712 * 305.36890 * 15 14 12 17 17 C 1.36937 * 120.62681 * 233.58734 * 16 15 14 18 18 H 1.08002 * 120.00276 * 152.41267 * 17 16 15 19 19 C 1.38810 * 120.00125 * 332.40172 * 17 16 15 20 20 N 1.31621 * 119.99993 * 334.90693 * 19 17 16 21 21 Si 1.86807 * 120.00054 * 154.90617 * 19 17 16 22 22 H 1.48495 * 109.47293 * 90.00337 * 21 19 17 23 23 H 1.48504 * 109.47150 * 210.00630 * 21 19 17 24 24 H 1.48498 * 109.46688 * 330.00245 * 21 19 17 25 25 C 1.46918 * 118.74069 * 53.85401 * 16 15 14 26 26 C 1.53043 * 109.45923 * 205.07169 * 12 11 9 27 27 C 1.52997 * 109.49708 * 298.56532 * 26 12 11 28 28 C 1.52996 * 109.49819 * 58.66852 * 26 12 11 29 29 H 1.09006 * 109.46667 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47508 * 299.99919 * 1 2 3 31 31 H 1.09000 * 109.47501 * 60.00229 * 1 2 3 32 32 H 1.08994 * 109.47395 * 239.99962 * 2 1 3 33 33 H 1.09000 * 109.47501 * 119.99771 * 2 1 3 34 34 H 1.08992 * 109.47387 * 270.03868 * 7 6 5 35 35 H 1.09002 * 109.47659 * 30.04647 * 7 6 5 36 36 H 1.09008 * 109.46515 * 150.04056 * 7 6 5 37 37 H 0.97009 * 119.99644 * 0.02562 * 11 9 8 38 38 H 1.09000 * 109.50186 * 61.43427 * 14 12 11 39 39 H 1.09000 * 109.52726 * 301.35179 * 14 12 11 40 40 H 1.09001 * 109.59137 * 185.57356 * 15 14 12 41 41 H 1.09003 * 109.70147 * 65.22543 * 15 14 12 42 42 H 0.96996 * 120.00154 * 354.25419 * 20 19 17 43 43 H 1.08993 * 109.58736 * 65.93126 * 25 16 15 44 44 H 1.08999 * 109.59143 * 186.35839 * 25 16 15 45 45 H 1.08999 * 109.47248 * 60.00715 * 27 26 12 46 46 H 1.09003 * 109.46698 * 179.97438 * 27 26 12 47 47 H 1.08999 * 109.47646 * 300.00487 * 27 26 12 48 48 H 1.08998 * 109.47165 * 59.99571 * 28 26 12 49 49 H 1.08997 * 109.47323 * 179.97438 * 28 26 12 50 50 H 1.09005 * 109.46925 * 299.99762 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.2960 2.1763 -1.0685 5 7 2.6932 3.2794 -0.7833 6 6 2.7609 3.4623 0.5022 7 6 3.2098 4.7056 1.2259 8 6 2.3067 2.1971 1.0995 9 6 2.1824 1.8469 2.5258 10 8 1.1401 2.0586 3.1154 11 7 3.2240 1.2918 3.1767 12 6 3.1007 0.9441 4.5944 13 1 2.4708 1.6794 5.0951 14 6 2.4682 -0.4432 4.7260 15 6 2.3091 -0.7889 6.2099 16 7 3.6154 -0.6562 6.8691 17 6 4.1365 -1.6907 7.5995 18 1 5.2066 -1.7938 7.7026 19 6 3.2893 -2.6069 8.2075 20 7 2.0585 -2.2594 8.5187 21 14 3.8959 -4.3331 8.5842 22 1 4.4958 -4.3616 9.9423 23 1 2.7552 -5.2822 8.5269 24 1 4.9189 -4.7277 7.5827 25 6 4.3493 0.6094 6.7347 26 6 4.4882 0.9374 5.2403 27 6 5.3624 -0.1187 4.5612 28 6 5.1330 2.3155 5.0794 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 4.2849 4.6575 1.3984 35 1 2.9777 5.5821 0.6209 36 1 2.6911 4.7765 2.1821 37 1 4.0556 1.1231 2.7064 38 1 3.1101 -1.1826 4.2470 39 1 1.4900 -0.4447 4.2452 40 1 1.9515 -1.8136 6.3101 41 1 1.5957 -0.1062 6.6718 42 1 1.7691 -1.3412 8.4003 43 1 3.7997 1.4055 7.2368 44 1 5.3384 0.5076 7.1812 45 1 5.4567 0.1149 3.5007 46 1 6.3506 -0.1228 5.0212 47 1 4.9029 -1.1003 4.6776 48 1 4.5102 3.0670 5.5647 49 1 6.1209 2.3104 5.5399 50 1 5.2271 2.5511 4.0193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941214992.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:44 Heat of formation + Delta-G solvation = 9.714185 kcal Electronic energy + Delta-G solvation = -30886.919712 eV Core-core repulsion = 26916.720311 eV Total energy + Delta-G solvation = -3970.199401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.97640 -41.46442 -39.67388 -36.63532 -35.87482 -35.61141 -34.60224 -33.20107 -31.87482 -31.11901 -29.80845 -28.20804 -27.49135 -27.09804 -25.68206 -24.72454 -23.77628 -22.41628 -21.84287 -20.92683 -19.90260 -19.44295 -18.94010 -18.60438 -17.52113 -17.26265 -16.34718 -16.13445 -16.08998 -15.60738 -15.56504 -15.29934 -15.20734 -15.05095 -14.73493 -14.35985 -14.30435 -14.22201 -13.92828 -13.87388 -13.55054 -13.51607 -12.91904 -12.78681 -12.69503 -12.60506 -12.56381 -12.52897 -12.46451 -12.31524 -11.90879 -11.89522 -11.80050 -11.61949 -11.48883 -11.40666 -11.08982 -10.98791 -10.52029 -10.43169 -10.14585 -8.90725 -8.21485 -5.36112 0.20698 0.79254 1.24778 1.60776 1.66932 1.68969 1.85194 2.17609 2.68048 3.04486 3.16195 3.24903 3.50253 3.59273 3.69148 3.80125 3.88190 3.96033 4.07301 4.17101 4.23549 4.26323 4.32606 4.44499 4.49977 4.54438 4.55331 4.64274 4.72403 4.74313 4.75467 4.83389 4.89573 4.91121 4.95680 4.97400 5.03840 5.05513 5.11479 5.16208 5.20651 5.24206 5.30596 5.33793 5.40871 5.62470 5.88609 6.37667 6.41567 7.03755 7.06846 7.11752 7.80206 8.25333 9.03988 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016566 B = 0.003304 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.828015 B = 8472.332170 C = 9330.712547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C 0.037 3.963 4 O 0.095 5.905 5 N -0.373 5.373 6 C 0.054 3.946 7 C -0.079 4.079 8 C -0.271 4.271 9 C 0.605 3.395 10 O -0.567 6.567 11 N -0.690 5.690 12 C 0.176 3.824 13 H 0.059 0.941 14 C -0.129 4.129 15 C 0.163 3.837 16 N -0.608 5.608 17 C -0.346 4.346 18 H 0.056 0.944 19 C -0.077 4.077 20 N -0.946 5.946 21 Si 1.113 2.887 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.272 1.272 25 C 0.157 3.843 26 C -0.077 4.077 27 C -0.125 4.125 28 C -0.131 4.131 29 H 0.091 0.909 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.127 0.873 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.412 0.588 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.048 0.952 41 H -0.006 1.006 42 H 0.252 0.748 43 H 0.007 0.993 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.057 0.943 47 H 0.046 0.954 48 H 0.048 0.952 49 H 0.068 0.932 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.456 8.403 -19.683 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 C -0.026 4.026 4 O 0.035 5.965 5 N -0.082 5.082 6 C -0.108 4.108 7 C -0.136 4.136 8 C -0.278 4.278 9 C 0.390 3.610 10 O -0.445 6.445 11 N -0.341 5.341 12 C 0.072 3.928 13 H 0.077 0.923 14 C -0.169 4.169 15 C 0.036 3.964 16 N -0.332 5.332 17 C -0.476 4.476 18 H 0.074 0.926 19 C -0.273 4.273 20 N -0.588 5.588 21 Si 0.938 3.062 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.197 1.197 25 C 0.031 3.969 26 C -0.079 4.079 27 C -0.183 4.183 28 C -0.189 4.189 29 H 0.109 0.891 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.250 0.750 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.012 0.988 42 H 0.062 0.938 43 H 0.025 0.975 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.087 0.913 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.578 7.807 -19.736 21.712 hybrid contribution 0.115 1.290 0.628 1.439 sum 4.693 9.097 -19.108 21.677 Atomic orbital electron populations 1.21781 0.92809 1.04060 1.02096 1.20464 0.97186 0.84328 1.06687 1.25126 0.96341 0.96737 0.84440 1.84508 1.61445 1.17502 1.33023 1.73604 1.18469 0.99250 1.16856 1.25155 0.99571 0.97177 0.88899 1.20362 1.03320 0.90617 0.99345 1.21852 1.14972 0.96530 0.94494 1.17011 0.83217 0.76428 0.84302 1.90832 1.29931 1.55197 1.68569 1.45993 1.15682 1.61325 1.11134 1.20676 0.96892 0.95233 0.80043 0.92269 1.22282 1.00018 0.97253 0.97364 1.20673 0.86871 0.98450 0.90388 1.44288 1.19687 1.11858 1.57330 1.20196 0.92616 1.06411 1.28336 0.92631 1.27115 0.95828 1.08296 0.96064 1.70878 1.20942 1.20227 1.46797 0.82895 0.74813 0.71992 0.76476 1.21292 1.22036 1.19726 1.21154 0.95645 0.86696 0.93382 1.21255 0.93344 0.97337 0.95959 1.21715 0.98865 0.98199 0.99488 1.21767 1.00692 0.93897 1.02543 0.89069 0.94377 0.91245 0.85526 0.88344 0.87551 0.88829 0.90245 0.74977 0.90844 0.92952 0.93354 0.98844 0.93770 0.97494 0.92216 0.91280 0.92430 0.93449 0.93300 0.91274 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.89 71.98 0.71 -1.67 16 2 C -0.05 -0.72 6.38 29.85 0.19 -0.53 16 3 C 0.04 0.75 6.80 25.48 0.17 0.93 16 4 O 0.09 2.03 11.06 77.02 0.85 2.88 16 5 N -0.37 -8.71 12.01 -44.78 -0.54 -9.25 16 6 C 0.05 1.20 7.59 45.15 0.34 1.54 16 7 C -0.08 -1.28 10.49 71.24 0.75 -0.53 16 8 C -0.27 -6.44 6.24 -18.75 -0.12 -6.55 16 9 C 0.61 17.00 7.57 86.65 0.66 17.66 16 10 O -0.57 -21.09 16.77 -4.07 -0.07 -21.15 16 11 N -0.69 -17.04 4.29 -445.72 -1.91 -18.95 16 12 C 0.18 5.54 1.57 45.02 0.07 5.61 16 13 H 0.06 2.20 7.57 -2.39 -0.02 2.18 16 14 C -0.13 -4.77 5.31 30.67 0.16 -4.61 16 15 C 0.16 7.71 4.69 86.36 0.41 8.12 16 16 N -0.61 -29.16 2.28 -698.27 -1.59 -30.75 16 17 C -0.35 -18.56 9.49 84.03 0.80 -17.76 16 18 H 0.06 2.95 7.94 -2.91 -0.02 2.93 16 19 C -0.08 -4.29 4.68 84.86 0.40 -3.89 16 20 N -0.95 -57.57 12.40 21.65 0.27 -57.30 16 21 Si 1.11 49.95 29.99 68.60 2.06 52.01 16 22 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 C 0.16 6.16 5.24 86.51 0.45 6.61 16 26 C -0.08 -2.24 0.56 -51.96 -0.03 -2.27 16 27 C -0.13 -3.37 7.84 71.98 0.56 -2.80 16 28 C -0.13 -2.93 8.31 71.98 0.60 -2.33 16 29 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 1.53 8.11 -2.39 -0.02 1.51 16 34 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.41 7.92 6.65 -92.70 -0.62 7.30 16 38 H 0.07 2.60 6.34 -2.39 -0.02 2.59 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 40 H 0.05 2.60 6.29 -2.39 -0.02 2.59 16 41 H -0.01 -0.33 7.86 -2.39 -0.02 -0.35 16 42 H 0.25 15.81 6.71 -92.71 -0.62 15.19 16 43 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.06 2.32 7.93 -2.39 -0.02 2.30 16 45 H 0.07 1.37 6.58 -2.39 -0.02 1.35 16 46 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.05 1.58 5.97 -2.39 -0.01 1.56 16 48 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.07 1.30 7.36 -2.38 -0.02 1.28 16 Total: -1.00 -71.03 395.80 5.67 -65.37 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.47 Total: 19.64 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 6.12 Total: -2.49 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -3.77 Total: -116.25 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.78 Total: -18.28 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 2.06 Total: 52.01 kcal Total: -71.03 5.67 -65.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941214992.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.081 kcal (2) G-P(sol) polarization free energy of solvation -71.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds