Wall clock time and date at job start Tue Mar 31 2020 20:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46897 * 2 1 4 4 N 1.30019 * 127.33413 * 270.14473 * 3 2 1 5 5 O 1.20657 * 112.29724 * 180.27578 * 4 3 2 6 6 C 1.33489 * 113.16088 * 359.73348 * 5 4 3 7 7 C 1.50702 * 126.83035 * 180.02562 * 6 5 4 8 8 C 1.37363 * 106.34098 * 359.97438 * 6 5 4 9 9 C 1.47396 * 128.56204 * 179.97438 * 8 6 5 10 10 O 1.21602 * 120.00077 * 90.02950 * 9 8 6 11 11 N 1.34783 * 119.99902 * 270.02565 * 9 8 6 12 12 C 1.46494 * 119.99823 * 179.72721 * 11 9 8 13 13 C 1.52995 * 109.47237 * 180.02562 * 12 11 9 14 14 H 1.08996 * 109.45263 * 64.99745 * 13 12 11 15 15 C 1.54872 * 109.45163 * 184.94681 * 13 12 11 16 16 C 1.47112 * 110.31469 * 191.31705 * 15 13 12 17 17 C 1.52566 * 114.30805 * 297.15344 * 16 15 13 18 18 C 1.50875 * 109.35014 * 85.04149 * 17 16 15 19 19 C 1.53946 * 110.09378 * 268.11112 * 18 17 16 20 20 N 1.44587 * 109.44859 * 305.05314 * 13 12 11 21 21 C 1.36936 * 118.64030 * 329.26601 * 20 13 12 22 22 H 1.08001 * 119.99848 * 332.12207 * 21 20 13 23 23 C 1.38806 * 119.99944 * 152.12772 * 21 20 13 24 24 N 1.31618 * 119.99751 * 343.97336 * 23 21 20 25 25 Si 1.86799 * 119.99983 * 163.98113 * 23 21 20 26 26 H 1.48491 * 109.47225 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47206 * 119.99937 * 25 23 21 28 28 H 1.48501 * 109.46979 * 239.99490 * 25 23 21 29 29 H 1.09004 * 109.47126 * 60.00561 * 1 2 3 30 30 H 1.09004 * 109.46840 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47370 * 300.00550 * 1 2 3 32 32 H 1.08991 * 109.47509 * 239.99909 * 2 1 3 33 33 H 1.08997 * 109.46755 * 119.99507 * 2 1 3 34 34 H 1.09003 * 109.47041 * 270.00047 * 7 6 5 35 35 H 1.09002 * 109.46923 * 29.99971 * 7 6 5 36 36 H 1.08995 * 109.47489 * 149.99622 * 7 6 5 37 37 H 0.96997 * 119.99707 * 0.02562 * 11 9 8 38 38 H 1.09001 * 109.47524 * 300.00574 * 12 11 9 39 39 H 1.08994 * 109.47310 * 60.00232 * 12 11 9 40 40 H 1.08992 * 109.32909 * 311.55197 * 15 13 12 41 41 H 1.09000 * 109.32894 * 71.03185 * 15 13 12 42 42 H 1.08996 * 108.51273 * 175.91191 * 16 15 13 43 43 H 1.09005 * 108.40927 * 58.31639 * 16 15 13 44 44 H 1.08999 * 109.49130 * 325.07735 * 17 16 15 45 45 H 1.08997 * 109.50900 * 205.01406 * 17 16 15 46 46 H 1.09001 * 109.36799 * 147.91946 * 18 17 16 47 47 H 1.09001 * 109.27021 * 28.23739 * 18 17 16 48 48 H 1.09004 * 108.94841 * 279.87548 * 19 18 17 49 49 H 1.08994 * 108.88014 * 161.20159 * 19 18 17 50 50 H 0.97007 * 119.99769 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2927 2.1651 -1.0338 5 8 2.6868 3.2617 -0.7208 6 6 2.7518 3.4388 0.6007 7 6 3.1988 4.6828 1.3245 8 6 2.3291 2.2622 1.1696 9 6 2.2093 1.9238 2.5992 10 8 1.1688 2.1403 3.1901 11 7 3.2530 1.3743 3.2514 12 6 3.1359 1.0435 4.6737 13 6 4.4516 0.4379 5.1665 14 1 5.2405 1.1878 5.1087 15 6 4.2878 -0.0261 6.6349 16 6 5.5982 -0.3599 7.2143 17 6 6.3102 -1.5222 6.5289 18 6 7.0747 -1.0060 5.3350 19 6 6.1991 -1.0862 4.0713 20 7 4.8013 -0.6936 4.3370 21 6 3.7940 -1.4312 3.7743 22 1 2.8306 -1.4878 4.2591 23 6 4.0113 -2.1061 2.5810 24 7 5.0482 -1.7990 1.8307 25 14 2.8320 -3.4499 2.0399 26 1 1.7565 -3.6019 3.0525 27 1 2.2324 -3.0849 0.7313 28 1 3.5699 -4.7316 1.9060 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.2739 4.6357 1.4980 35 1 2.9664 5.5588 0.7189 36 1 2.6793 4.7536 2.2801 37 1 4.0830 1.2019 2.7800 38 1 2.9181 1.9486 5.2406 39 1 2.3293 0.3240 4.8142 40 1 3.8295 0.7735 7.2169 41 1 3.6446 -0.9055 6.6658 42 1 5.4578 -0.6115 8.2655 43 1 6.2364 0.5216 7.1528 44 1 5.5746 -2.2563 6.2001 45 1 7.0021 -1.9893 7.2296 46 1 7.9717 -1.6085 5.1921 47 1 7.3602 0.0310 5.5116 48 1 6.2140 -2.1090 3.6947 49 1 6.6145 -0.4238 3.3119 50 1 5.2002 -2.2709 0.9969 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969141885.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:45 Heat of formation + Delta-G solvation = 27.275250 kcal Electronic energy + Delta-G solvation = -31493.631409 eV Core-core repulsion = 27524.193513 eV Total energy + Delta-G solvation = -3969.437896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.55762 -39.16891 -38.01797 -34.97031 -34.51442 -33.52760 -33.39611 -31.73552 -31.01266 -30.73465 -28.06513 -27.02216 -25.79301 -24.52247 -23.56844 -23.40987 -21.90785 -20.22508 -19.78365 -19.34912 -19.21438 -17.61906 -17.43900 -16.33960 -15.87338 -15.64130 -15.21178 -14.74913 -14.55956 -14.19365 -14.07127 -13.82335 -13.61222 -13.47657 -13.27427 -13.17668 -12.96661 -12.72556 -12.53039 -12.31261 -12.11446 -12.00121 -11.54643 -11.35252 -11.33256 -11.23303 -11.13227 -10.87525 -10.62782 -10.49860 -10.24334 -10.08481 -10.03249 -9.80735 -9.74266 -9.60447 -9.55548 -9.45338 -9.08469 -8.47662 -8.30964 -6.75397 -5.87294 -3.31303 1.58568 2.27247 2.91885 3.17082 3.28511 3.39482 3.42061 3.87156 4.40633 4.43604 4.55566 5.12726 5.16572 5.20285 5.30417 5.37075 5.39028 5.42056 5.45405 5.51662 5.55010 5.60267 5.65761 5.68387 5.84693 5.94034 5.96650 6.02867 6.09798 6.14623 6.17008 6.25111 6.34204 6.37001 6.51663 6.52275 6.56856 6.61124 6.65635 6.71171 6.80403 6.94329 7.05277 7.14598 7.35897 7.61288 7.77609 8.19530 8.37171 8.52516 8.77587 9.14913 9.79765 10.25092 11.19227 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011127 B = 0.005129 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.839115 B = 5457.801633 C = 6690.504867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C 0.073 3.927 4 N -0.363 5.363 5 O 0.090 5.910 6 C -0.001 4.001 7 C -0.073 4.073 8 C -0.231 4.231 9 C 0.594 3.406 10 O -0.551 6.551 11 N -0.675 5.675 12 C 0.128 3.872 13 C 0.174 3.826 14 H 0.045 0.955 15 C -0.136 4.136 16 C -0.101 4.101 17 C -0.106 4.106 18 C -0.143 4.143 19 C 0.181 3.819 20 N -0.583 5.583 21 C -0.251 4.251 22 H 0.063 0.937 23 C 0.015 3.985 24 N -0.898 5.898 25 Si 0.881 3.119 26 H -0.278 1.278 27 H -0.286 1.286 28 H -0.291 1.291 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.414 0.586 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.046 0.954 44 H 0.074 0.926 45 H 0.039 0.961 46 H 0.048 0.952 47 H 0.043 0.957 48 H 0.073 0.927 49 H 0.024 0.976 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.269 8.253 2.452 8.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 C -0.089 4.089 4 N -0.070 5.070 5 O 0.029 5.971 6 C -0.064 4.064 7 C -0.131 4.131 8 C -0.238 4.238 9 C 0.377 3.623 10 O -0.430 6.430 11 N -0.323 5.323 12 C 0.004 3.996 13 C 0.064 3.936 14 H 0.063 0.937 15 C -0.177 4.177 16 C -0.138 4.138 17 C -0.144 4.144 18 C -0.182 4.182 19 C 0.056 3.944 20 N -0.305 5.305 21 C -0.381 4.381 22 H 0.081 0.919 23 C -0.184 4.184 24 N -0.542 5.542 25 Si 0.711 3.289 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.217 1.217 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.250 0.750 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.091 0.909 49 H 0.042 0.958 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.423 8.169 1.408 8.301 hybrid contribution -0.125 -1.172 0.173 1.191 sum -0.548 6.998 1.581 7.195 Atomic orbital electron populations 1.21708 0.94024 1.02227 1.02234 1.20050 0.96183 0.87547 1.05055 1.24710 0.99451 0.98323 0.86393 1.73549 1.17245 0.92709 1.23473 1.84475 1.62984 1.27076 1.22554 1.24485 1.00144 0.97848 0.83931 1.20381 1.02692 0.90761 0.99241 1.22029 1.11022 0.94873 0.95860 1.16794 0.83864 0.78038 0.83604 1.90752 1.28764 1.55573 1.67958 1.45670 1.15923 1.59329 1.11418 1.21551 0.99736 0.98323 0.79998 1.20511 0.93262 0.89646 0.90136 0.93736 1.21374 0.97267 1.00956 0.98073 1.20288 0.97135 0.98162 0.98229 1.20943 0.98912 0.98246 0.96305 1.22064 0.98688 0.99281 0.98130 1.20988 0.81872 1.00853 0.90685 1.43715 1.02338 1.28918 1.55512 1.19056 0.93716 1.23883 1.01405 0.91896 1.24879 0.97537 1.00449 0.95568 1.70035 1.29894 1.41538 1.12702 0.86569 0.80974 0.82765 0.78595 1.20275 1.21289 1.21744 0.92804 0.91732 0.91891 0.89997 0.88185 0.88969 0.89558 0.88972 0.74967 0.92979 0.91129 0.93308 0.91786 0.94081 0.93542 0.90770 0.94224 0.93282 0.93822 0.90894 0.95824 0.93756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.89 37.16 0.37 -1.93 16 2 C -0.05 -0.92 6.55 -27.88 -0.18 -1.10 16 3 C 0.07 1.37 6.84 -79.77 -0.55 0.83 16 4 N -0.36 -6.60 12.01 34.78 0.42 -6.18 16 5 O 0.09 1.46 11.06 18.66 0.21 1.67 16 6 C 0.00 -0.01 7.55 -34.63 -0.26 -0.27 16 7 C -0.07 -0.76 10.33 36.01 0.37 -0.38 16 8 C -0.23 -4.18 6.24 -102.89 -0.64 -4.82 16 9 C 0.59 11.50 7.60 -12.53 -0.10 11.40 16 10 O -0.55 -11.98 17.11 5.28 0.09 -11.89 16 11 N -0.67 -12.67 4.71 -61.40 -0.29 -12.96 16 12 C 0.13 2.31 4.52 -4.05 -0.02 2.29 16 13 C 0.17 3.06 2.19 -67.97 -0.15 2.91 16 14 H 0.04 0.77 8.06 -51.93 -0.42 0.35 16 15 C -0.14 -2.15 5.06 -28.57 -0.14 -2.30 16 16 C -0.10 -1.50 5.16 -29.78 -0.15 -1.65 16 17 C -0.11 -1.73 5.51 -28.02 -0.15 -1.88 16 18 C -0.14 -2.43 5.71 -27.30 -0.16 -2.58 16 19 C 0.18 3.76 4.67 -2.95 -0.01 3.74 16 20 N -0.58 -12.00 1.78 -164.46 -0.29 -12.30 16 21 C -0.25 -5.87 7.63 -15.06 -0.11 -5.98 16 22 H 0.06 1.55 6.73 -52.49 -0.35 1.20 16 23 C 0.01 0.36 4.85 -17.43 -0.08 0.28 16 24 N -0.90 -22.79 11.14 55.49 0.62 -22.17 16 25 Si 0.88 20.26 29.54 -169.99 -5.02 15.24 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.10 2.07 8.09 -51.93 -0.42 1.65 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.97 8.11 -51.93 -0.42 0.54 16 37 H 0.41 8.24 8.07 -40.82 -0.33 7.91 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.42 6.83 -51.93 -0.35 1.07 16 40 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.66 7.35 -51.93 -0.38 0.28 16 44 H 0.07 1.39 7.48 -51.93 -0.39 1.00 16 45 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.04 0.70 7.31 -51.93 -0.38 0.32 16 48 H 0.07 1.74 6.45 -51.93 -0.33 1.40 16 49 H 0.02 0.53 8.02 -51.93 -0.42 0.12 16 50 H 0.25 6.45 8.31 -40.82 -0.34 6.11 16 LS Contribution 397.44 15.07 5.99 5.99 Total: -1.00 -26.86 397.44 -8.66 -35.52 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -8.40 Total: 8.54 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.98 Total: -1.45 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.45 Total: -53.61 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.30 Total: -10.22 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -26.86 -8.66 -35.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969141885.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.795 kcal (2) G-P(sol) polarization free energy of solvation -26.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds