Wall clock time and date at job start Tue Mar 31 2020 20:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46897 * 2 1 4 4 N 1.30019 * 127.33413 * 270.14473 * 3 2 1 5 5 O 1.20657 * 112.29724 * 180.27578 * 4 3 2 6 6 C 1.33489 * 113.16088 * 359.73348 * 5 4 3 7 7 C 1.50702 * 126.83035 * 180.02562 * 6 5 4 8 8 C 1.37363 * 106.34098 * 359.97438 * 6 5 4 9 9 C 1.47396 * 128.56204 * 179.97438 * 8 6 5 10 10 O 1.21602 * 120.00077 * 90.02950 * 9 8 6 11 11 N 1.34783 * 119.99902 * 270.02565 * 9 8 6 12 12 C 1.46494 * 119.99823 * 179.72721 * 11 9 8 13 13 C 1.52995 * 109.47237 * 180.02562 * 12 11 9 14 14 H 1.08996 * 109.45263 * 64.99745 * 13 12 11 15 15 C 1.54872 * 109.45163 * 184.94681 * 13 12 11 16 16 C 1.47112 * 110.31469 * 191.31705 * 15 13 12 17 17 C 1.52566 * 114.30805 * 297.15344 * 16 15 13 18 18 C 1.50875 * 109.35014 * 85.04149 * 17 16 15 19 19 C 1.53946 * 110.09378 * 268.11112 * 18 17 16 20 20 N 1.44587 * 109.44859 * 305.05314 * 13 12 11 21 21 C 1.36936 * 118.64030 * 329.26601 * 20 13 12 22 22 H 1.08001 * 119.99848 * 332.12207 * 21 20 13 23 23 C 1.38806 * 119.99944 * 152.12772 * 21 20 13 24 24 N 1.31618 * 119.99751 * 343.97336 * 23 21 20 25 25 Si 1.86799 * 119.99983 * 163.98113 * 23 21 20 26 26 H 1.48491 * 109.47225 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47206 * 119.99937 * 25 23 21 28 28 H 1.48501 * 109.46979 * 239.99490 * 25 23 21 29 29 H 1.09004 * 109.47126 * 60.00561 * 1 2 3 30 30 H 1.09004 * 109.46840 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47370 * 300.00550 * 1 2 3 32 32 H 1.08991 * 109.47509 * 239.99909 * 2 1 3 33 33 H 1.08997 * 109.46755 * 119.99507 * 2 1 3 34 34 H 1.09003 * 109.47041 * 270.00047 * 7 6 5 35 35 H 1.09002 * 109.46923 * 29.99971 * 7 6 5 36 36 H 1.08995 * 109.47489 * 149.99622 * 7 6 5 37 37 H 0.96997 * 119.99707 * 0.02562 * 11 9 8 38 38 H 1.09001 * 109.47524 * 300.00574 * 12 11 9 39 39 H 1.08994 * 109.47310 * 60.00232 * 12 11 9 40 40 H 1.08992 * 109.32909 * 311.55197 * 15 13 12 41 41 H 1.09000 * 109.32894 * 71.03185 * 15 13 12 42 42 H 1.08996 * 108.51273 * 175.91191 * 16 15 13 43 43 H 1.09005 * 108.40927 * 58.31639 * 16 15 13 44 44 H 1.08999 * 109.49130 * 325.07735 * 17 16 15 45 45 H 1.08997 * 109.50900 * 205.01406 * 17 16 15 46 46 H 1.09001 * 109.36799 * 147.91946 * 18 17 16 47 47 H 1.09001 * 109.27021 * 28.23739 * 18 17 16 48 48 H 1.09004 * 108.94841 * 279.87548 * 19 18 17 49 49 H 1.08994 * 108.88014 * 161.20159 * 19 18 17 50 50 H 0.97007 * 119.99769 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2927 2.1651 -1.0338 5 8 2.6868 3.2617 -0.7208 6 6 2.7518 3.4388 0.6007 7 6 3.1988 4.6828 1.3245 8 6 2.3291 2.2622 1.1696 9 6 2.2093 1.9238 2.5992 10 8 1.1688 2.1403 3.1901 11 7 3.2530 1.3743 3.2514 12 6 3.1359 1.0435 4.6737 13 6 4.4516 0.4379 5.1665 14 1 5.2405 1.1878 5.1087 15 6 4.2878 -0.0261 6.6349 16 6 5.5982 -0.3599 7.2143 17 6 6.3102 -1.5222 6.5289 18 6 7.0747 -1.0060 5.3350 19 6 6.1991 -1.0862 4.0713 20 7 4.8013 -0.6936 4.3370 21 6 3.7940 -1.4312 3.7743 22 1 2.8306 -1.4878 4.2591 23 6 4.0113 -2.1061 2.5810 24 7 5.0482 -1.7990 1.8307 25 14 2.8320 -3.4499 2.0399 26 1 1.7565 -3.6019 3.0525 27 1 2.2324 -3.0849 0.7313 28 1 3.5699 -4.7316 1.9060 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.2739 4.6357 1.4980 35 1 2.9664 5.5588 0.7189 36 1 2.6793 4.7536 2.2801 37 1 4.0830 1.2019 2.7800 38 1 2.9181 1.9486 5.2406 39 1 2.3293 0.3240 4.8142 40 1 3.8295 0.7735 7.2169 41 1 3.6446 -0.9055 6.6658 42 1 5.4578 -0.6115 8.2655 43 1 6.2364 0.5216 7.1528 44 1 5.5746 -2.2563 6.2001 45 1 7.0021 -1.9893 7.2296 46 1 7.9717 -1.6085 5.1921 47 1 7.3602 0.0310 5.5116 48 1 6.2140 -2.1090 3.6947 49 1 6.6145 -0.4238 3.3119 50 1 5.2002 -2.2709 0.9969 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969141885.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:44 Heat of formation + Delta-G solvation = 13.926078 kcal Electronic energy + Delta-G solvation = -31494.210272 eV Core-core repulsion = 27524.193513 eV Total energy + Delta-G solvation = -3970.016759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.92111 -40.70621 -39.51981 -36.36730 -35.99593 -35.20643 -34.62340 -33.18307 -32.44888 -32.38310 -29.27502 -28.46468 -27.35848 -25.92906 -25.18962 -24.83616 -23.34674 -21.69950 -21.15177 -20.78191 -20.71098 -19.08648 -18.81015 -17.95311 -17.34473 -17.24692 -16.77394 -16.25164 -15.95710 -15.84837 -15.48264 -15.28385 -15.20378 -14.91089 -14.48591 -14.44464 -14.14934 -14.04281 -13.79785 -13.64441 -13.50174 -13.38010 -13.14038 -12.90730 -12.85236 -12.72947 -12.65067 -12.50450 -12.34091 -12.00556 -11.90797 -11.53187 -11.39104 -11.34248 -11.26690 -11.17756 -10.95397 -10.89275 -10.37350 -10.33579 -9.87292 -8.53166 -7.78201 -5.20157 0.32837 0.84786 1.37674 1.42334 1.46887 1.50464 1.91782 2.44324 2.54017 3.04191 3.26337 3.37542 3.61860 3.86843 3.93688 4.05978 4.06326 4.10622 4.16463 4.24391 4.29804 4.40524 4.45581 4.52458 4.62719 4.63544 4.66676 4.69915 4.78394 4.81762 4.84059 4.96376 5.03175 5.09365 5.10068 5.10870 5.15400 5.27002 5.29278 5.41129 5.44706 5.56593 5.61641 5.70420 5.78196 5.81180 5.91546 6.48345 6.63318 7.20175 7.22904 7.28573 8.03030 8.41288 9.25065 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011127 B = 0.005129 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.839115 B = 5457.801633 C = 6690.504867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.049 4.049 3 C 0.056 3.944 4 N -0.376 5.376 5 O 0.098 5.902 6 C 0.027 3.973 7 C -0.074 4.074 8 C -0.269 4.269 9 C 0.600 3.400 10 O -0.579 6.579 11 N -0.672 5.672 12 C 0.131 3.869 13 C 0.173 3.827 14 H 0.060 0.940 15 C -0.128 4.128 16 C -0.100 4.100 17 C -0.103 4.103 18 C -0.132 4.132 19 C 0.190 3.810 20 N -0.587 5.587 21 C -0.231 4.231 22 H 0.049 0.951 23 C -0.019 4.019 24 N -0.914 5.914 25 Si 0.912 3.088 26 H -0.281 1.281 27 H -0.286 1.286 28 H -0.300 1.300 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.409 0.591 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.041 0.959 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.041 0.959 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.035 0.965 49 H 0.001 0.999 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.078 10.468 3.881 11.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.088 4.088 3 C -0.106 4.106 4 N -0.082 5.082 5 O 0.037 5.963 6 C -0.037 4.037 7 C -0.131 4.131 8 C -0.276 4.276 9 C 0.384 3.616 10 O -0.461 6.461 11 N -0.319 5.319 12 C 0.007 3.993 13 C 0.065 3.935 14 H 0.078 0.922 15 C -0.168 4.168 16 C -0.137 4.137 17 C -0.141 4.141 18 C -0.170 4.170 19 C 0.066 3.934 20 N -0.309 5.309 21 C -0.362 4.362 22 H 0.066 0.934 23 C -0.216 4.216 24 N -0.560 5.560 25 Si 0.743 3.257 26 H -0.206 1.206 27 H -0.213 1.213 28 H -0.228 1.228 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.112 0.888 37 H 0.244 0.756 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.054 0.946 49 H 0.019 0.981 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.382 10.387 2.861 10.780 hybrid contribution -0.360 -1.800 -0.228 1.850 sum 0.022 8.586 2.632 8.981 Atomic orbital electron populations 1.21651 0.92297 1.03098 1.02278 1.19978 0.97710 0.87591 1.03492 1.24801 1.00142 0.98599 0.87048 1.73521 1.17856 0.93306 1.23529 1.84452 1.62380 1.26270 1.23185 1.25288 0.97009 0.98217 0.83152 1.20697 1.03833 0.89435 0.99117 1.21991 1.14142 0.96408 0.95090 1.16888 0.83295 0.77360 0.84024 1.90723 1.29639 1.56869 1.68822 1.45700 1.15569 1.58895 1.11728 1.21581 0.99070 0.98681 0.79962 1.20704 0.93326 0.88804 0.90668 0.92235 1.21286 0.97962 1.00838 0.96730 1.20271 0.96366 0.98079 0.99003 1.20905 0.98578 0.98231 0.96409 1.21931 0.98133 1.00671 0.96304 1.20751 0.82451 0.98000 0.92242 1.43759 1.01728 1.29780 1.55657 1.18976 0.93612 1.23087 1.00534 0.93353 1.25151 0.98392 1.01888 0.96145 1.70122 1.30914 1.42268 1.12713 0.86068 0.79966 0.81384 0.78261 1.20590 1.21287 1.22753 0.91354 0.90466 0.93092 0.89952 0.91207 0.86755 0.86311 0.88839 0.75575 0.90661 0.93739 0.90646 0.94033 0.92034 0.91899 0.94002 0.92022 0.92344 0.92055 0.94596 0.98064 0.94718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 9.89 71.98 0.71 -3.66 16 2 C -0.05 -1.88 6.55 29.85 0.20 -1.68 16 3 C 0.06 2.12 6.84 45.15 0.31 2.43 16 4 N -0.38 -13.53 12.01 -44.78 -0.54 -14.07 16 5 O 0.10 3.06 11.06 77.03 0.85 3.91 16 6 C 0.03 0.78 7.55 25.48 0.19 0.97 16 7 C -0.07 -1.28 10.33 71.24 0.74 -0.55 16 8 C -0.27 -9.72 6.24 -18.75 -0.12 -9.84 16 9 C 0.60 23.34 7.60 86.65 0.66 24.00 16 10 O -0.58 -25.33 17.11 -4.04 -0.07 -25.40 16 11 N -0.67 -25.25 4.71 -466.42 -2.20 -27.44 16 12 C 0.13 4.64 4.52 86.38 0.39 5.03 16 13 C 0.17 5.84 2.19 45.99 0.10 5.94 16 14 H 0.06 1.89 8.06 -2.39 -0.02 1.87 16 15 C -0.13 -3.74 5.06 29.40 0.15 -3.60 16 16 C -0.10 -2.62 5.16 28.62 0.15 -2.47 16 17 C -0.10 -3.12 5.51 29.76 0.16 -2.96 16 18 C -0.13 -4.23 5.71 30.22 0.17 -4.06 16 19 C 0.19 7.97 4.67 86.49 0.40 8.37 16 20 N -0.59 -24.29 1.78 -674.25 -1.20 -25.48 16 21 C -0.23 -11.12 7.63 84.03 0.64 -10.48 16 22 H 0.05 2.47 6.73 -2.91 -0.02 2.45 16 23 C -0.02 -0.97 4.85 84.86 0.41 -0.56 16 24 N -0.91 -48.19 11.14 21.65 0.24 -47.95 16 25 Si 0.91 43.01 29.54 68.60 2.03 45.04 16 26 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 27 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 28 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 29 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 33 H 0.07 3.05 8.09 -2.39 -0.02 3.03 16 34 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.68 8.11 -2.39 -0.02 1.67 16 37 H 0.41 16.38 8.07 -92.71 -0.75 15.63 16 38 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.04 1.81 6.83 -2.39 -0.02 1.80 16 40 H 0.08 1.84 8.11 -2.39 -0.02 1.82 16 41 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.06 1.49 7.35 -2.38 -0.02 1.47 16 44 H 0.04 1.54 7.48 -2.39 -0.02 1.52 16 45 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.06 1.78 7.31 -2.39 -0.02 1.76 16 48 H 0.04 1.76 6.45 -2.39 -0.02 1.74 16 49 H 0.00 0.06 8.02 -2.39 -0.02 0.04 16 50 H 0.24 12.97 8.31 -92.70 -0.77 12.20 16 Total: -1.00 -60.78 397.44 4.57 -56.21 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.19 Total: 28.30 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 5.27 Total: 6.90 kcal Atomic # 7 Polarization: -111.26 SS G_CDS: -3.69 Total: -114.95 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: 0.78 Total: -21.49 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -60.78 4.57 -56.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969141885.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.132 kcal (2) G-P(sol) polarization free energy of solvation -60.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds