Wall clock time and date at job start Tue Mar 31 2020 19:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.47732 * 2 1 4 4 N 1.30180 * 126.80573 * 270.02872 * 3 2 1 5 5 O 1.20917 * 111.60900 * 179.97438 * 4 3 2 6 6 C 1.34045 * 111.56647 * 359.76230 * 5 4 3 7 7 C 1.50695 * 126.78053 * 180.28598 * 6 5 4 8 8 C 1.52999 * 109.47120 * 270.11128 * 7 6 5 9 9 C 1.35460 * 106.44436 * 0.38029 * 6 5 4 10 10 C 1.50697 * 128.00472 * 179.91678 * 9 6 5 11 11 C 1.50706 * 109.46820 * 269.67267 * 10 9 6 12 12 O 1.21283 * 119.99877 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99982 * 180.02562 * 11 10 9 14 14 C 1.48213 * 119.97285 * 180.02562 * 13 11 10 15 15 C 1.47140 * 110.34807 * 102.46123 * 14 13 11 16 16 C 1.53243 * 111.81161 * 58.22520 * 15 14 13 17 17 N 1.43463 * 108.26683 * 281.68213 * 16 15 14 18 18 C 1.36939 * 118.93544 * 273.77992 * 17 16 15 19 19 H 1.07998 * 120.00420 * 31.32827 * 18 17 16 20 20 C 1.38810 * 119.99577 * 211.31926 * 18 17 16 21 21 N 1.31617 * 120.00259 * 198.86487 * 20 18 17 22 22 Si 1.86804 * 120.00174 * 18.87354 * 20 18 17 23 23 H 1.48501 * 109.47136 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47244 * 59.99421 * 22 20 18 25 25 H 1.48502 * 109.46961 * 299.99499 * 22 20 18 26 26 C 1.48857 * 122.12354 * 93.50205 * 17 16 15 27 27 C 1.43621 * 119.97181 * 359.97438 * 13 11 10 28 28 H 1.08990 * 109.47530 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47086 * 300.00640 * 1 2 3 30 30 H 1.09007 * 109.46609 * 59.99325 * 1 2 3 31 31 H 1.09003 * 109.46803 * 240.00052 * 2 1 3 32 32 H 1.09001 * 109.47215 * 120.00348 * 2 1 3 33 33 H 1.09001 * 109.46728 * 30.11250 * 7 6 5 34 34 H 1.09006 * 109.47037 * 150.10763 * 7 6 5 35 35 H 1.09009 * 109.46700 * 179.97438 * 8 7 6 36 36 H 1.08993 * 109.47107 * 299.99573 * 8 7 6 37 37 H 1.08995 * 109.47094 * 60.00089 * 8 7 6 38 38 H 1.09000 * 109.47489 * 149.68043 * 10 9 6 39 39 H 1.08998 * 109.47626 * 29.67608 * 10 9 6 40 40 H 1.08997 * 109.32644 * 222.73048 * 14 13 11 41 41 H 1.08996 * 109.32203 * 342.37180 * 14 13 11 42 42 H 1.08990 * 109.00601 * 178.90522 * 15 14 13 43 43 H 1.08997 * 109.00581 * 297.77215 * 15 14 13 44 44 H 1.09001 * 109.49255 * 162.03997 * 16 15 14 45 45 H 1.09003 * 109.73328 * 41.46275 * 16 15 14 46 46 H 0.97001 * 119.99850 * 357.66867 * 21 20 18 47 47 H 1.08992 * 109.47895 * 80.87744 * 26 17 16 48 48 H 1.09000 * 109.48309 * 200.90762 * 26 17 16 49 49 H 1.09002 * 108.87791 * 149.90884 * 27 13 11 50 50 H 1.09007 * 108.87384 * 31.47506 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2920 2.1562 -1.0423 5 8 2.6807 3.2564 -0.7253 6 6 2.7257 3.3982 0.6068 7 6 3.1515 4.6261 1.3696 8 6 4.6581 4.5678 1.6300 9 6 2.3148 2.2192 1.1321 10 6 2.1828 1.8470 2.5864 11 6 3.4783 1.2489 3.0714 12 8 4.4164 1.1365 2.3110 13 7 3.5942 0.8391 4.3501 14 6 4.8688 0.2515 4.8266 15 6 5.6235 1.2379 5.6155 16 6 4.8188 1.7405 6.8188 17 7 3.8686 2.7085 6.3516 18 6 4.2579 4.0162 6.2347 19 1 5.2824 4.2549 5.9901 20 6 3.3356 5.0350 6.4303 21 7 3.5821 6.2432 5.9702 22 14 1.7446 4.6914 7.3470 23 1 0.9377 5.9358 7.4216 24 1 2.0564 4.2209 8.7206 25 1 0.9753 3.6444 6.6278 26 6 2.4749 2.3363 5.9842 27 6 2.4830 0.9731 5.2501 28 1 -0.3634 -1.0275 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5140 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9180 5.5160 0.7851 34 1 2.6197 4.6659 2.3203 35 1 4.9661 5.4563 2.1814 36 1 4.8916 3.6779 2.2144 37 1 5.1898 4.5281 0.6794 38 1 1.3801 1.1189 2.7038 39 1 1.9530 2.7384 3.1702 40 1 4.6551 -0.6190 5.4467 41 1 5.4676 -0.0549 3.9689 42 1 6.5455 0.7778 5.9706 43 1 5.8729 2.0863 4.9783 44 1 5.4929 2.2038 7.5393 45 1 4.2956 0.9063 7.2861 46 1 4.4229 6.4301 5.5240 47 1 1.8692 2.2594 6.8871 48 1 2.0555 3.0996 5.3289 49 1 2.5304 0.1743 5.9902 50 1 1.5568 0.8723 4.6842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981353217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:21 Heat of formation + Delta-G solvation = 46.021872 kcal Electronic energy + Delta-G solvation = -31870.198984 eV Core-core repulsion = 27901.574003 eV Total energy + Delta-G solvation = -3968.624981 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.70066 -39.94750 -37.33524 -35.67059 -34.68170 -34.37050 -33.09344 -31.72558 -31.45059 -30.42917 -28.52955 -27.58994 -25.83814 -24.55484 -23.54172 -23.20259 -22.65711 -21.24665 -19.92905 -19.62220 -18.65380 -17.60103 -17.28798 -16.88563 -16.52891 -15.96301 -15.50542 -15.00009 -14.82906 -14.42712 -14.17622 -14.03127 -13.90140 -13.56216 -13.45138 -13.08200 -12.91095 -12.81782 -12.68203 -12.47472 -12.35823 -12.16461 -11.93043 -11.73704 -11.71980 -11.46884 -11.42613 -11.11530 -10.94234 -10.81549 -10.54082 -10.45083 -10.32012 -10.20553 -9.82625 -9.66459 -9.45102 -9.12957 -8.86254 -8.50927 -8.15231 -7.04774 -6.29490 -3.41976 1.69026 2.34532 2.96481 3.27994 3.28572 3.45053 3.46151 3.62319 4.24342 4.53332 4.54437 4.83713 4.84589 4.92577 4.99084 5.11594 5.16503 5.29137 5.32226 5.35481 5.43586 5.47174 5.50364 5.53516 5.55546 5.60493 5.69527 5.74977 5.77488 5.83246 5.87291 5.92588 5.97121 6.01826 6.08958 6.24841 6.26264 6.26750 6.31216 6.32925 6.42059 6.51572 6.64683 6.67638 6.83706 7.05633 7.77498 8.07534 8.43640 8.48084 8.54108 9.00586 9.59934 10.11534 11.08815 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011829 B = 0.004930 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.523429 B = 5677.661650 C = 6348.861649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.044 4.044 3 C 0.036 3.964 4 N -0.373 5.373 5 O 0.092 5.908 6 C -0.004 4.004 7 C -0.042 4.042 8 C -0.142 4.142 9 C -0.179 4.179 10 C -0.063 4.063 11 C 0.525 3.475 12 O -0.542 6.542 13 N -0.587 5.587 14 C 0.130 3.870 15 C -0.168 4.168 16 C 0.162 3.838 17 N -0.598 5.598 18 C -0.346 4.346 19 H 0.061 0.939 20 C -0.009 4.009 21 N -0.919 5.919 22 Si 1.044 2.956 23 H -0.299 1.299 24 H -0.293 1.293 25 H -0.272 1.272 26 C 0.110 3.890 27 C 0.088 3.912 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.034 0.966 46 H 0.263 0.737 47 H 0.039 0.961 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.389 -11.834 -5.364 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.082 4.082 3 C -0.124 4.124 4 N -0.080 5.080 5 O 0.029 5.971 6 C -0.068 4.068 7 C -0.080 4.080 8 C -0.200 4.200 9 C -0.183 4.183 10 C -0.103 4.103 11 C 0.313 3.687 12 O -0.419 6.419 13 N -0.319 5.319 14 C 0.009 3.991 15 C -0.209 4.209 16 C 0.034 3.966 17 N -0.321 5.321 18 C -0.475 4.475 19 H 0.079 0.921 20 C -0.211 4.211 21 N -0.558 5.558 22 Si 0.875 3.125 23 H -0.226 1.226 24 H -0.220 1.220 25 H -0.199 1.199 26 C -0.016 4.016 27 C -0.038 4.038 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.118 0.882 39 H 0.128 0.872 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.357 -11.400 -6.574 14.615 hybrid contribution 1.522 -0.674 0.483 1.734 sum -4.835 -12.074 -6.091 14.362 Atomic orbital electron populations 1.21726 0.94052 1.02070 1.02473 1.19879 0.96104 0.88605 1.03601 1.23237 1.01874 0.98689 0.88560 1.73754 1.17263 0.92977 1.23973 1.84754 1.62909 1.26752 1.22698 1.24370 1.00153 0.98961 0.83296 1.20167 0.98420 0.90897 0.98524 1.21680 0.92973 1.03722 1.01616 1.20194 1.08706 0.93591 0.95848 1.19953 0.96839 1.02990 0.90536 1.20271 0.89430 0.77407 0.81613 1.90656 1.40705 1.55385 1.55170 1.47338 1.14003 1.61222 1.09333 1.20553 0.84916 0.95183 0.98467 1.21720 0.98740 0.99804 1.00619 1.20245 0.91680 0.91772 0.92925 1.43904 1.07526 1.05655 1.75031 1.20140 0.98211 0.81651 1.47480 0.92143 1.26201 1.03566 0.92758 0.98566 1.70913 1.25269 1.22140 1.37447 0.84407 0.76347 0.74598 0.77129 1.22638 1.22038 1.19901 1.22981 0.87688 0.94234 0.96653 1.21922 0.88580 0.99859 0.93433 0.91784 0.92236 0.92448 0.90292 0.89952 0.89758 0.88102 0.91130 0.91430 0.93051 0.88225 0.87172 0.92056 0.90418 0.92529 0.91231 0.93094 0.94818 0.92721 0.94339 0.91227 0.91280 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.89 37.16 0.37 -1.04 16 2 C -0.04 -0.52 6.44 -27.89 -0.18 -0.70 16 3 C 0.04 0.55 6.58 -82.10 -0.54 0.01 16 4 N -0.37 -6.33 12.07 33.42 0.40 -5.93 16 5 O 0.09 1.55 11.20 17.17 0.19 1.74 16 6 C 0.00 -0.07 6.74 -35.30 -0.24 -0.31 16 7 C -0.04 -0.65 6.35 -27.89 -0.18 -0.82 16 8 C -0.14 -2.39 9.89 37.16 0.37 -2.02 16 9 C -0.18 -2.85 4.81 -104.42 -0.50 -3.36 16 10 C -0.06 -0.93 4.58 -29.03 -0.13 -1.06 16 11 C 0.52 9.02 7.66 -10.98 -0.08 8.94 16 12 O -0.54 -11.04 14.91 5.56 0.08 -10.96 16 13 N -0.59 -9.34 2.46 -176.68 -0.43 -9.77 16 14 C 0.13 1.99 5.69 -5.91 -0.03 1.95 16 15 C -0.17 -2.84 5.63 -29.42 -0.17 -3.00 16 16 C 0.16 2.95 5.59 -5.52 -0.03 2.92 16 17 N -0.60 -12.69 2.25 -172.37 -0.39 -13.07 16 18 C -0.35 -8.89 9.49 -15.06 -0.14 -9.03 16 19 H 0.06 1.74 8.06 -52.49 -0.42 1.32 16 20 C -0.01 -0.24 5.19 -17.43 -0.09 -0.33 16 21 N -0.92 -26.51 13.71 55.49 0.76 -25.75 16 22 Si 1.04 23.57 25.59 -169.99 -4.35 19.22 16 23 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -5.23 4.69 56.52 0.26 -4.96 16 26 C 0.11 2.02 4.18 -1.77 -0.01 2.01 16 27 C 0.09 1.26 5.05 -4.60 -0.02 1.23 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.10 1.63 7.44 -51.93 -0.39 1.25 16 35 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 36 H 0.07 1.33 7.58 -51.93 -0.39 0.94 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.10 1.17 7.37 -51.93 -0.38 0.78 16 39 H 0.11 1.68 6.61 -51.93 -0.34 1.34 16 40 H 0.06 0.78 8.06 -51.93 -0.42 0.36 16 41 H 0.08 1.25 7.12 -51.93 -0.37 0.89 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.45 7.90 -51.93 -0.41 1.04 16 44 H 0.05 0.98 8.02 -51.93 -0.42 0.57 16 45 H 0.03 0.54 7.58 -51.93 -0.39 0.14 16 46 H 0.26 7.63 8.73 -40.82 -0.36 7.27 16 47 H 0.04 0.70 5.70 -51.93 -0.30 0.40 16 48 H 0.07 1.38 5.21 -51.93 -0.27 1.11 16 49 H 0.07 0.86 7.73 -51.93 -0.40 0.46 16 50 H 0.07 0.82 6.38 -51.93 -0.33 0.49 16 LS Contribution 387.62 15.07 5.84 5.84 Total: -1.00 -31.38 387.62 -7.83 -39.22 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -8.33 Total: 4.06 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -1.61 Total: -4.60 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.34 Total: -54.52 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.28 Total: -9.22 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -4.35 Total: 19.22 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.38 -7.83 -39.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981353217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.239 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds