Wall clock time and date at job start Tue Mar 31 2020 19:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47440 * 2 1 4 4 N 1.30173 * 126.79861 * 270.16589 * 3 2 1 5 5 O 1.20922 * 111.60040 * 180.24862 * 4 3 2 6 6 C 1.34038 * 111.57104 * 359.74573 * 5 4 3 7 7 C 1.50701 * 126.78048 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47252 * 270.00167 * 7 6 5 9 9 C 1.35455 * 106.44697 * 0.02562 * 6 5 4 10 10 C 1.50696 * 128.01312 * 179.97438 * 9 6 5 11 11 C 1.50701 * 109.47254 * 89.99357 * 10 9 6 12 12 O 1.21288 * 119.99675 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00203 * 179.97438 * 11 10 9 14 14 C 1.47418 * 125.64700 * 0.06380 * 13 11 10 15 15 C 1.54915 * 104.83107 * 204.07770 * 14 13 11 16 16 H 1.09002 * 111.00539 * 81.06145 * 15 14 13 17 17 N 1.46500 * 111.03417 * 204.89999 * 15 14 13 18 18 C 1.36934 * 119.99978 * 270.38994 * 17 15 14 19 19 H 1.07995 * 120.00129 * 0.02562 * 18 17 15 20 20 C 1.38818 * 119.99952 * 180.02562 * 18 17 15 21 21 N 1.31613 * 119.99801 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99883 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47364 * 59.99918 * 22 20 18 24 24 H 1.48499 * 109.47060 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47059 * 300.00056 * 22 20 18 26 26 C 1.55154 * 101.58176 * 322.98725 * 15 14 13 27 27 C 1.47029 * 125.64802 * 180.02562 * 13 11 10 28 28 H 1.08993 * 109.88066 * 59.57140 * 27 13 11 29 29 C 1.52995 * 109.88243 * 298.40730 * 27 13 11 30 30 H 1.09000 * 109.47260 * 300.00731 * 1 2 3 31 31 H 1.08999 * 109.46647 * 60.00321 * 1 2 3 32 32 H 1.09001 * 109.47367 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47260 * 239.99269 * 2 1 3 34 34 H 1.09004 * 109.47051 * 119.99826 * 2 1 3 35 35 H 1.08997 * 109.46522 * 30.00408 * 7 6 5 36 36 H 1.09005 * 109.46844 * 149.99892 * 7 6 5 37 37 H 1.08996 * 109.47562 * 59.99922 * 8 7 6 38 38 H 1.09003 * 109.46760 * 179.97438 * 8 7 6 39 39 H 1.09002 * 109.47281 * 299.99996 * 8 7 6 40 40 H 1.09000 * 109.46869 * 329.99829 * 10 9 6 41 41 H 1.08997 * 109.47198 * 209.99798 * 10 9 6 42 42 H 1.08995 * 110.37279 * 85.24185 * 14 13 11 43 43 H 1.08997 * 110.36990 * 322.91383 * 14 13 11 44 44 H 0.97001 * 120.00052 * 90.39778 * 17 15 14 45 45 H 0.97006 * 120.00093 * 179.97438 * 21 20 18 46 46 H 1.09004 * 110.72212 * 153.86391 * 26 15 14 47 47 H 1.08997 * 110.72125 * 276.96414 * 26 15 14 48 48 H 1.09008 * 109.47549 * 302.19544 * 29 27 13 49 49 H 1.09001 * 109.47247 * 62.19161 * 29 27 13 50 50 H 1.09005 * 109.47241 * 182.19076 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2895 2.1569 -1.0423 5 8 2.6840 3.2552 -0.7254 6 6 2.7358 3.3947 0.6067 7 6 3.1762 4.6175 1.3695 8 6 4.6827 4.5436 1.6259 9 6 2.3153 2.2191 1.1321 10 6 2.1843 1.8466 2.5864 11 6 0.8032 2.2020 3.0736 12 8 0.0038 2.7077 2.3144 13 7 0.4560 1.9571 4.3526 14 6 1.3247 1.3502 5.3775 15 6 0.3484 0.7298 6.4080 16 1 -0.0159 -0.2392 6.0668 17 7 0.9772 0.6169 7.7263 18 6 1.6707 -0.5159 8.0594 19 1 1.7543 -1.3260 7.3500 20 6 2.2661 -0.6231 9.3087 21 7 2.1637 0.3639 10.1733 22 14 3.2126 -2.1682 9.7628 23 1 4.3375 -2.3571 8.8119 24 1 3.7468 -2.0342 11.1419 25 1 2.3055 -3.3420 9.6958 26 6 -0.7946 1.7790 6.4250 27 6 -0.8515 2.2517 4.9571 28 1 -1.6357 1.7139 4.4243 29 6 -1.1214 3.7568 4.9055 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.9502 5.5102 0.7864 36 1 2.6472 4.6619 2.3216 37 1 5.2116 4.4992 0.6739 38 1 5.0012 5.4284 2.1772 39 1 4.9086 3.6508 2.2090 40 1 2.9266 2.3917 3.1693 41 1 2.3461 0.7750 2.7029 42 1 1.9422 2.1130 5.8516 43 1 1.9506 0.5758 4.9341 44 1 0.9023 1.3446 8.3633 45 1 2.5795 0.2889 11.0466 46 1 -1.7375 1.3173 6.7181 47 1 -0.5486 2.6064 7.0905 48 1 -0.3223 4.2872 5.4235 49 1 -1.1601 4.0836 3.8663 50 1 -2.0739 3.9720 5.3897 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988967216.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:23 Heat of formation + Delta-G solvation = 2.403639 kcal Electronic energy + Delta-G solvation = -30097.542608 eV Core-core repulsion = 26127.026198 eV Total energy + Delta-G solvation = -3970.516410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.93597 -41.20534 -38.85374 -36.77371 -35.93902 -35.84655 -33.44246 -33.14588 -32.49791 -31.50164 -30.06244 -29.32378 -26.67618 -25.77719 -25.59628 -24.67555 -23.61462 -22.26114 -21.68360 -20.74763 -19.87385 -19.19687 -18.64515 -18.11254 -17.84476 -17.27762 -16.55375 -16.42968 -15.99013 -15.51815 -15.35731 -15.26550 -15.10563 -14.85267 -14.61506 -14.30163 -14.16975 -13.95768 -13.83548 -13.70469 -13.45885 -13.39857 -13.24851 -12.97907 -12.80079 -12.75507 -12.64945 -12.45578 -12.33258 -12.30800 -12.11539 -12.09767 -11.98739 -11.69660 -11.66827 -11.45768 -11.08697 -10.93119 -10.74649 -10.11130 -9.62053 -9.00770 -7.90868 -5.20240 0.47037 1.14306 1.54263 1.55070 1.60989 1.63976 2.03213 2.18239 2.60675 3.15198 3.41314 3.42276 3.48146 3.72466 3.83657 3.90162 3.97767 4.02562 4.08576 4.19980 4.24912 4.28047 4.29352 4.36092 4.40459 4.43345 4.49707 4.53987 4.55134 4.68485 4.76900 4.82217 4.83683 4.89676 4.91156 4.99380 5.01190 5.08236 5.11216 5.12999 5.17513 5.25001 5.27398 5.34452 5.42449 5.46421 5.59337 6.30145 6.58736 7.19001 7.28453 7.38432 8.10321 8.33943 9.31777 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012029 B = 0.003015 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.179397 B = 9284.575518 C = 9583.569171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 C 0.030 3.970 4 N -0.396 5.396 5 O 0.083 5.917 6 C -0.014 4.014 7 C -0.042 4.042 8 C -0.146 4.146 9 C -0.189 4.189 10 C -0.055 4.055 11 C 0.531 3.469 12 O -0.569 6.569 13 N -0.606 5.606 14 C 0.086 3.914 15 C 0.165 3.835 16 H 0.064 0.936 17 N -0.722 5.722 18 C -0.242 4.242 19 H 0.081 0.919 20 C -0.067 4.067 21 N -0.966 5.966 22 Si 0.966 3.034 23 H -0.276 1.276 24 H -0.301 1.301 25 H -0.280 1.280 26 C -0.125 4.125 27 C 0.140 3.860 28 H 0.072 0.928 29 C -0.151 4.151 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.377 0.623 45 H 0.250 0.750 46 H 0.087 0.913 47 H 0.075 0.925 48 H 0.054 0.946 49 H 0.050 0.950 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 5.720 -16.792 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 C -0.129 4.129 4 N -0.104 5.104 5 O 0.021 5.979 6 C -0.077 4.077 7 C -0.080 4.080 8 C -0.203 4.203 9 C -0.193 4.193 10 C -0.095 4.095 11 C 0.320 3.680 12 O -0.449 6.449 13 N -0.340 5.340 14 C -0.040 4.040 15 C 0.054 3.946 16 H 0.082 0.918 17 N -0.362 5.362 18 C -0.373 4.373 19 H 0.099 0.901 20 C -0.260 4.260 21 N -0.617 5.617 22 Si 0.795 3.205 23 H -0.202 1.202 24 H -0.228 1.228 25 H -0.207 1.207 26 C -0.164 4.164 27 C 0.036 3.964 28 H 0.090 0.910 29 C -0.209 4.209 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.210 0.790 45 H 0.059 0.941 46 H 0.106 0.894 47 H 0.094 0.906 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.012 5.641 -18.587 19.424 hybrid contribution 0.371 -0.517 1.478 1.610 sum 0.359 5.124 -17.109 17.863 Atomic orbital electron populations 1.21632 0.93925 1.02812 1.01252 1.20065 0.96392 0.87226 1.04767 1.23786 1.00716 1.00000 0.88434 1.73770 1.18515 0.93282 1.24805 1.84727 1.62960 1.26888 1.23283 1.24752 1.00724 0.99032 0.83238 1.20268 0.98316 0.91074 0.98387 1.21775 0.92304 1.03615 1.02628 1.20402 1.08324 0.94271 0.96306 1.19913 0.94630 1.05272 0.89681 1.20409 0.89737 0.77842 0.79975 1.90674 1.53748 1.45433 1.55036 1.48616 1.15168 1.60891 1.09332 1.23175 0.94387 0.97251 0.89156 1.21443 0.91199 0.96667 0.85280 0.91798 1.42422 1.62364 1.18789 1.12583 1.19585 1.24224 0.95461 0.98078 0.90132 1.25459 1.02973 1.00541 0.97032 1.69787 1.50649 1.33674 1.07541 0.85333 0.78827 0.79768 0.76541 1.20186 1.22753 1.20673 1.22917 0.99946 0.99162 0.94378 1.21513 0.85270 0.96547 0.93028 0.91032 1.22034 1.02437 0.94555 1.01905 0.93823 0.93865 0.89722 0.89239 0.88133 0.88151 0.88731 0.92108 0.89448 0.92240 0.85916 0.86113 0.91784 0.90134 0.79042 0.94069 0.89417 0.90611 0.92700 0.93049 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.90 71.98 0.71 -2.30 16 2 C -0.05 -0.97 6.44 29.85 0.19 -0.78 16 3 C 0.03 0.78 6.58 43.58 0.29 1.06 16 4 N -0.40 -11.52 12.07 -49.57 -0.60 -12.12 16 5 O 0.08 2.24 11.20 71.65 0.80 3.04 16 6 C -0.01 -0.32 6.74 25.04 0.17 -0.15 16 7 C -0.04 -0.69 6.30 29.85 0.19 -0.50 16 8 C -0.15 -1.87 9.89 71.98 0.71 -1.16 16 9 C -0.19 -4.61 4.81 -19.73 -0.10 -4.71 16 10 C -0.06 -1.19 4.96 29.10 0.14 -1.05 16 11 C 0.53 14.36 7.64 87.66 0.67 15.03 16 12 O -0.57 -18.92 14.75 -3.05 -0.05 -18.96 16 13 N -0.61 -16.11 3.07 -788.06 -2.42 -18.52 16 14 C 0.09 2.44 6.39 86.86 0.55 3.00 16 15 C 0.16 5.46 3.70 46.38 0.17 5.63 16 16 H 0.06 2.16 8.11 -2.39 -0.02 2.14 16 17 N -0.72 -31.70 5.26 -316.37 -1.66 -33.36 16 18 C -0.24 -11.95 9.97 84.04 0.84 -11.12 16 19 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 20 C -0.07 -3.54 5.50 84.86 0.47 -3.08 16 21 N -0.97 -55.01 13.06 21.65 0.28 -54.73 16 22 Si 0.97 42.73 29.55 68.60 2.03 44.76 16 23 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 C -0.13 -3.46 6.11 31.78 0.19 -3.27 16 27 C 0.14 3.64 3.46 45.34 0.16 3.79 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 C -0.15 -3.67 9.10 71.98 0.65 -3.02 16 30 H 0.04 1.14 7.81 -2.39 -0.02 1.12 16 31 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.10 1.74 7.65 -2.38 -0.02 1.72 16 35 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.57 8.06 -2.38 -0.02 1.55 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.12 2.20 8.08 -2.39 -0.02 2.18 16 41 H 0.12 2.24 7.36 -2.39 -0.02 2.23 16 42 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.08 2.12 7.48 -2.39 -0.02 2.10 16 44 H 0.38 18.03 7.73 -92.71 -0.72 17.31 16 45 H 0.25 14.03 8.31 -92.70 -0.77 13.26 16 46 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.08 2.16 7.71 -2.39 -0.02 2.14 16 48 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 49 H 0.05 1.41 6.90 -2.39 -0.02 1.39 16 50 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -64.77 408.49 4.62 -60.15 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.21 Total: 32.35 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 6.02 Total: -2.61 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -4.40 Total: -118.72 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.76 Total: -15.92 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -64.77 4.62 -60.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988967216.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.556 kcal (2) G-P(sol) polarization free energy of solvation -64.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds