Wall clock time and date at job start Tue Mar 31 2020 19:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 109.47047 * 2 1 4 4 N 1.30184 * 126.80205 * 270.02614 * 3 2 1 5 5 O 1.20913 * 111.60618 * 179.97438 * 4 3 2 6 6 C 1.34039 * 111.56804 * 359.75904 * 5 4 3 7 7 C 1.50705 * 126.77516 * 180.28687 * 6 5 4 8 8 C 1.53001 * 109.47174 * 270.10990 * 7 6 5 9 9 C 1.35447 * 106.44418 * 0.38224 * 6 5 4 10 10 C 1.50707 * 128.00179 * 179.91483 * 9 6 5 11 11 C 1.50706 * 109.46794 * 269.67379 * 10 9 6 12 12 O 1.21278 * 119.99926 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99931 * 180.02562 * 11 10 9 14 14 C 1.47425 * 125.64767 * 359.69212 * 13 11 10 15 15 C 1.54910 * 104.83231 * 156.13676 * 14 13 11 16 16 H 1.08991 * 111.00552 * 278.93287 * 15 14 13 17 17 N 1.46506 * 111.03526 * 155.09783 * 15 14 13 18 18 C 1.36935 * 120.00057 * 92.78615 * 17 15 14 19 19 H 1.08004 * 119.99839 * 359.97438 * 18 17 15 20 20 C 1.38809 * 119.99899 * 179.97438 * 18 17 15 21 21 N 1.31621 * 120.00120 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99857 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46948 * 60.00670 * 22 20 18 24 24 H 1.48508 * 109.46844 * 180.02562 * 22 20 18 25 25 H 1.48491 * 109.47224 * 299.99974 * 22 20 18 26 26 C 1.55160 * 101.58122 * 37.00939 * 15 14 13 27 27 C 1.47026 * 125.65100 * 180.02562 * 13 11 10 28 28 H 1.09004 * 109.87531 * 300.21113 * 27 13 11 29 29 C 1.53004 * 109.87945 * 61.21790 * 27 13 11 30 30 H 1.08997 * 109.47182 * 299.99811 * 1 2 3 31 31 H 1.08990 * 109.47160 * 60.00535 * 1 2 3 32 32 H 1.09004 * 109.46769 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47225 * 239.99228 * 2 1 3 34 34 H 1.09005 * 109.46897 * 119.99866 * 2 1 3 35 35 H 1.08993 * 109.47038 * 30.11305 * 7 6 5 36 36 H 1.09008 * 109.46617 * 150.11450 * 7 6 5 37 37 H 1.09006 * 109.47061 * 180.02562 * 8 7 6 38 38 H 1.08998 * 109.47113 * 300.00464 * 8 7 6 39 39 H 1.08998 * 109.46985 * 60.00607 * 8 7 6 40 40 H 1.09000 * 109.46638 * 149.68410 * 10 9 6 41 41 H 1.08989 * 109.47526 * 29.67609 * 10 9 6 42 42 H 1.09001 * 110.36478 * 274.97629 * 14 13 11 43 43 H 1.08998 * 110.36859 * 37.30006 * 14 13 11 44 44 H 0.97005 * 119.99741 * 272.78480 * 17 15 14 45 45 H 0.97002 * 119.99653 * 179.97438 * 21 20 18 46 46 H 1.08997 * 110.71793 * 206.13154 * 26 15 14 47 47 H 1.09003 * 110.87062 * 82.93498 * 26 15 14 48 48 H 1.09000 * 109.46733 * 58.55090 * 29 27 13 49 49 H 1.09005 * 109.46849 * 178.54976 * 29 27 13 50 50 H 1.08994 * 109.46873 * 298.54749 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2918 2.1562 -1.0424 5 8 2.6804 3.2564 -0.7255 6 6 2.7252 3.3984 0.6066 7 6 3.1509 4.6265 1.3693 8 6 4.6575 4.5684 1.6298 9 6 2.3145 2.2194 1.1319 10 6 2.1825 1.8474 2.5864 11 6 3.4780 1.2495 3.0715 12 8 4.4162 1.1371 2.3112 13 7 3.5940 0.8398 4.3502 14 6 2.5404 0.9230 5.3780 15 6 2.9061 -0.1726 6.4103 16 1 2.5732 -1.1541 6.0728 17 7 2.3518 0.1418 7.7295 18 6 1.1260 -0.3493 8.0919 19 1 0.5677 -0.9682 7.4051 20 6 0.6011 -0.0518 9.3420 21 7 1.2813 0.7028 10.1788 22 14 -1.0714 -0.7213 9.8361 23 1 -1.0394 -2.2056 9.8046 24 1 -1.4025 -0.2620 11.2090 25 1 -2.1019 -0.2280 8.8877 26 6 4.4551 -0.0845 6.4225 27 6 4.7945 0.2422 4.9530 28 1 5.0600 -0.6719 4.4219 29 6 5.9567 1.2355 4.8921 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.9173 5.5163 0.7848 36 1 2.6191 4.6662 2.3200 37 1 4.9653 5.4565 2.1818 38 1 4.8911 3.6786 2.2143 39 1 5.1893 4.5287 0.6792 40 1 1.3799 1.1192 2.7036 41 1 1.9526 2.7387 3.1700 42 1 2.5470 1.9058 5.8493 43 1 1.5643 0.7189 4.9380 44 1 2.8531 0.6980 8.3462 45 1 0.9143 0.9110 11.0522 46 1 4.8932 -1.0381 6.7169 47 1 4.7935 0.7140 7.0829 48 1 5.6813 2.1496 5.4181 49 1 6.8356 0.7956 5.3636 50 1 6.1811 1.4687 3.8513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988967217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:26 Heat of formation + Delta-G solvation = 18.601276 kcal Electronic energy + Delta-G solvation = -30107.149291 eV Core-core repulsion = 26137.335263 eV Total energy + Delta-G solvation = -3969.814028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.94313 -40.01672 -37.60188 -35.80484 -35.00069 -34.24759 -32.38616 -31.59240 -31.40448 -30.56048 -28.63643 -28.21836 -25.49123 -24.73260 -24.05022 -23.77060 -22.51885 -21.13120 -20.34436 -19.84732 -18.67157 -17.65977 -17.43231 -17.03268 -16.73616 -16.00907 -15.41452 -15.17303 -14.81220 -14.43329 -14.31335 -14.08654 -13.78325 -13.67385 -13.48400 -13.13432 -12.99902 -12.87800 -12.74401 -12.69188 -12.54481 -12.24639 -12.08642 -11.91272 -11.72732 -11.56482 -11.50604 -11.32526 -11.19070 -11.07000 -10.82432 -10.81730 -10.69097 -10.37270 -10.11308 -10.00846 -9.83333 -9.66166 -9.16727 -9.06530 -8.40007 -7.16813 -5.91935 -3.23238 1.42984 2.13891 2.76506 3.01754 3.23954 3.35097 3.40613 3.41131 4.07327 4.29807 4.44707 4.64425 4.67707 4.74030 4.88908 5.00804 5.03049 5.06418 5.08905 5.14578 5.20040 5.23429 5.25297 5.35895 5.44489 5.51614 5.56062 5.62542 5.64796 5.66433 5.69947 5.72876 5.77420 5.82121 5.89359 5.92864 6.02946 6.07061 6.07612 6.10456 6.15114 6.29554 6.40111 6.42635 6.61395 6.76732 7.55887 7.75624 8.25145 8.26692 8.33448 9.37514 9.90641 10.25434 11.29814 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012166 B = 0.003110 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.954480 B = 9000.776513 C = 9989.270086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C 0.039 3.961 4 N -0.369 5.369 5 O 0.095 5.905 6 C -0.017 4.017 7 C -0.041 4.041 8 C -0.150 4.150 9 C -0.173 4.173 10 C -0.061 4.061 11 C 0.529 3.471 12 O -0.541 6.541 13 N -0.609 5.609 14 C 0.071 3.929 15 C 0.173 3.827 16 H 0.068 0.932 17 N -0.711 5.711 18 C -0.252 4.252 19 H 0.072 0.928 20 C -0.006 4.006 21 N -0.929 5.929 22 Si 0.908 3.092 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C -0.138 4.138 27 C 0.139 3.861 28 H 0.070 0.930 29 C -0.160 4.160 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.387 0.613 45 H 0.258 0.742 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.055 0.945 49 H 0.061 0.939 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 4.702 -16.259 17.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.120 4.120 4 N -0.075 5.075 5 O 0.031 5.969 6 C -0.081 4.081 7 C -0.080 4.080 8 C -0.208 4.208 9 C -0.177 4.177 10 C -0.101 4.101 11 C 0.317 3.683 12 O -0.419 6.419 13 N -0.343 5.343 14 C -0.055 4.055 15 C 0.060 3.940 16 H 0.086 0.914 17 N -0.351 5.351 18 C -0.383 4.383 19 H 0.090 0.910 20 C -0.203 4.203 21 N -0.576 5.576 22 Si 0.738 3.262 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.211 1.211 26 C -0.177 4.177 27 C 0.036 3.964 28 H 0.088 0.912 29 C -0.218 4.218 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.222 0.778 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.074 0.926 49 H 0.080 0.920 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.059 4.387 -17.995 18.962 hybrid contribution -0.874 -0.191 1.392 1.655 sum 3.185 4.196 -16.602 17.418 Atomic orbital electron populations 1.21729 0.93862 1.02401 1.02393 1.19927 0.96282 0.88374 1.03875 1.23303 1.01509 0.98859 0.88367 1.73784 1.16979 0.92830 1.23886 1.84763 1.62842 1.26870 1.22415 1.24169 1.01452 0.98759 0.83722 1.20117 0.97879 0.91562 0.98409 1.21778 0.93428 1.03022 1.02561 1.20221 1.08035 0.93507 0.95958 1.19883 0.97129 1.02946 0.90119 1.20023 0.89425 0.78320 0.80539 1.90674 1.40659 1.56166 1.54423 1.48634 1.15481 1.60855 1.09328 1.23530 0.90022 1.02421 0.89562 1.21274 0.90510 0.95321 0.86847 0.91435 1.42313 1.20536 1.60576 1.11629 1.19204 0.94433 1.25855 0.98762 0.90988 1.24765 0.98787 1.00086 0.96678 1.69647 1.38420 1.41043 1.08495 0.86269 0.83764 0.78575 0.77553 1.21112 1.21613 1.21108 1.23043 0.98372 1.02490 0.93758 1.21495 0.85319 0.95774 0.93825 0.91178 1.22121 0.97639 0.99339 1.02704 0.92183 0.92501 0.91547 0.90161 0.89684 0.89516 0.88753 0.91523 0.91367 0.92253 0.87625 0.87724 0.91210 0.91258 0.77832 0.93223 0.90391 0.90416 0.92578 0.91997 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.89 37.16 0.37 -0.99 16 2 C -0.05 -0.52 6.44 -27.89 -0.18 -0.70 16 3 C 0.04 0.52 6.58 -82.10 -0.54 -0.02 16 4 N -0.37 -5.40 12.07 33.42 0.40 -5.00 16 5 O 0.09 1.30 11.20 17.18 0.19 1.49 16 6 C -0.02 -0.21 6.74 -35.30 -0.24 -0.45 16 7 C -0.04 -0.37 6.35 -27.88 -0.18 -0.55 16 8 C -0.15 -1.43 9.89 37.16 0.37 -1.06 16 9 C -0.17 -2.21 4.81 -104.42 -0.50 -2.72 16 10 C -0.06 -0.71 5.03 -29.03 -0.15 -0.86 16 11 C 0.53 7.55 7.63 -10.98 -0.08 7.47 16 12 O -0.54 -9.20 14.49 5.56 0.08 -9.12 16 13 N -0.61 -8.61 3.07 -163.01 -0.50 -9.11 16 14 C 0.07 1.07 6.38 -2.53 -0.02 1.05 16 15 C 0.17 3.00 3.71 -65.78 -0.24 2.76 16 16 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 17 N -0.71 -15.88 5.25 -51.35 -0.27 -16.15 16 18 C -0.25 -6.36 9.96 -15.06 -0.15 -6.51 16 19 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 21 N -0.93 -26.22 13.06 55.49 0.72 -25.49 16 22 Si 0.91 20.95 29.55 -169.99 -5.02 15.93 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C -0.14 -2.02 6.13 -24.90 -0.15 -2.17 16 27 C 0.14 1.93 3.46 -66.95 -0.23 1.70 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 C -0.16 -2.06 9.11 37.16 0.34 -1.72 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.73 7.44 -51.92 -0.39 0.35 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.82 7.58 -51.93 -0.39 0.42 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.11 1.12 7.85 -51.93 -0.41 0.72 16 41 H 0.10 1.06 7.44 -51.94 -0.39 0.67 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 1.00 7.48 -51.93 -0.39 0.61 16 44 H 0.39 9.28 7.77 -40.82 -0.32 8.96 16 45 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.08 1.16 7.72 -51.93 -0.40 0.76 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.06 0.93 6.85 -51.93 -0.36 0.57 16 LS Contribution 407.85 15.07 6.15 6.15 Total: -1.00 -30.29 407.85 -8.43 -38.72 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -8.50 Total: 7.61 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -1.68 Total: -5.02 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.36 Total: -55.76 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.27 Total: -7.63 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.29 -8.43 -38.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988967217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.320 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds