Wall clock time and date at job start Tue Mar 31 2020 19:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 109.47047 * 2 1 4 4 N 1.30184 * 126.80205 * 270.02614 * 3 2 1 5 5 O 1.20913 * 111.60618 * 179.97438 * 4 3 2 6 6 C 1.34039 * 111.56804 * 359.75904 * 5 4 3 7 7 C 1.50705 * 126.77516 * 180.28687 * 6 5 4 8 8 C 1.53001 * 109.47174 * 270.10990 * 7 6 5 9 9 C 1.35447 * 106.44418 * 0.38224 * 6 5 4 10 10 C 1.50707 * 128.00179 * 179.91483 * 9 6 5 11 11 C 1.50706 * 109.46794 * 269.67379 * 10 9 6 12 12 O 1.21278 * 119.99926 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99931 * 180.02562 * 11 10 9 14 14 C 1.47425 * 125.64767 * 359.69212 * 13 11 10 15 15 C 1.54910 * 104.83231 * 156.13676 * 14 13 11 16 16 H 1.08991 * 111.00552 * 278.93287 * 15 14 13 17 17 N 1.46506 * 111.03526 * 155.09783 * 15 14 13 18 18 C 1.36935 * 120.00057 * 92.78615 * 17 15 14 19 19 H 1.08004 * 119.99839 * 359.97438 * 18 17 15 20 20 C 1.38809 * 119.99899 * 179.97438 * 18 17 15 21 21 N 1.31621 * 120.00120 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99857 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46948 * 60.00670 * 22 20 18 24 24 H 1.48508 * 109.46844 * 180.02562 * 22 20 18 25 25 H 1.48491 * 109.47224 * 299.99974 * 22 20 18 26 26 C 1.55160 * 101.58122 * 37.00939 * 15 14 13 27 27 C 1.47026 * 125.65100 * 180.02562 * 13 11 10 28 28 H 1.09004 * 109.87531 * 300.21113 * 27 13 11 29 29 C 1.53004 * 109.87945 * 61.21790 * 27 13 11 30 30 H 1.08997 * 109.47182 * 299.99811 * 1 2 3 31 31 H 1.08990 * 109.47160 * 60.00535 * 1 2 3 32 32 H 1.09004 * 109.46769 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47225 * 239.99228 * 2 1 3 34 34 H 1.09005 * 109.46897 * 119.99866 * 2 1 3 35 35 H 1.08993 * 109.47038 * 30.11305 * 7 6 5 36 36 H 1.09008 * 109.46617 * 150.11450 * 7 6 5 37 37 H 1.09006 * 109.47061 * 180.02562 * 8 7 6 38 38 H 1.08998 * 109.47113 * 300.00464 * 8 7 6 39 39 H 1.08998 * 109.46985 * 60.00607 * 8 7 6 40 40 H 1.09000 * 109.46638 * 149.68410 * 10 9 6 41 41 H 1.08989 * 109.47526 * 29.67609 * 10 9 6 42 42 H 1.09001 * 110.36478 * 274.97629 * 14 13 11 43 43 H 1.08998 * 110.36859 * 37.30006 * 14 13 11 44 44 H 0.97005 * 119.99741 * 272.78480 * 17 15 14 45 45 H 0.97002 * 119.99653 * 179.97438 * 21 20 18 46 46 H 1.08997 * 110.71793 * 206.13154 * 26 15 14 47 47 H 1.09003 * 110.87062 * 82.93498 * 26 15 14 48 48 H 1.09000 * 109.46733 * 58.55090 * 29 27 13 49 49 H 1.09005 * 109.46849 * 178.54976 * 29 27 13 50 50 H 1.08994 * 109.46873 * 298.54749 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2918 2.1562 -1.0424 5 8 2.6804 3.2564 -0.7255 6 6 2.7252 3.3984 0.6066 7 6 3.1509 4.6265 1.3693 8 6 4.6575 4.5684 1.6298 9 6 2.3145 2.2194 1.1319 10 6 2.1825 1.8474 2.5864 11 6 3.4780 1.2495 3.0715 12 8 4.4162 1.1371 2.3112 13 7 3.5940 0.8398 4.3502 14 6 2.5404 0.9230 5.3780 15 6 2.9061 -0.1726 6.4103 16 1 2.5732 -1.1541 6.0728 17 7 2.3518 0.1418 7.7295 18 6 1.1260 -0.3493 8.0919 19 1 0.5677 -0.9682 7.4051 20 6 0.6011 -0.0518 9.3420 21 7 1.2813 0.7028 10.1788 22 14 -1.0714 -0.7213 9.8361 23 1 -1.0394 -2.2056 9.8046 24 1 -1.4025 -0.2620 11.2090 25 1 -2.1019 -0.2280 8.8877 26 6 4.4551 -0.0845 6.4225 27 6 4.7945 0.2422 4.9530 28 1 5.0600 -0.6719 4.4219 29 6 5.9567 1.2355 4.8921 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.9173 5.5163 0.7848 36 1 2.6191 4.6662 2.3200 37 1 4.9653 5.4565 2.1818 38 1 4.8911 3.6786 2.2143 39 1 5.1893 4.5287 0.6792 40 1 1.3799 1.1192 2.7036 41 1 1.9526 2.7387 3.1700 42 1 2.5470 1.9058 5.8493 43 1 1.5643 0.7189 4.9380 44 1 2.8531 0.6980 8.3462 45 1 0.9143 0.9110 11.0522 46 1 4.8932 -1.0381 6.7169 47 1 4.7935 0.7140 7.0829 48 1 5.6813 2.1496 5.4181 49 1 6.8356 0.7956 5.3636 50 1 6.1811 1.4687 3.8513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988967217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:25 Heat of formation + Delta-G solvation = 2.338863 kcal Electronic energy + Delta-G solvation = -30107.854482 eV Core-core repulsion = 26137.335263 eV Total energy + Delta-G solvation = -3970.519219 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.93628 -41.20478 -38.84989 -36.78691 -35.94900 -35.81016 -33.44516 -33.14904 -32.48630 -31.51243 -30.06788 -29.31850 -26.67842 -25.76989 -25.57738 -24.67348 -23.62230 -22.26917 -21.68773 -20.76383 -19.83404 -19.22102 -18.65096 -18.10422 -17.85246 -17.25477 -16.55197 -16.40863 -16.02945 -15.52819 -15.37146 -15.24012 -15.10762 -14.83468 -14.61968 -14.24322 -14.13514 -14.00368 -13.82198 -13.75050 -13.48067 -13.37859 -13.20828 -12.96316 -12.80842 -12.75427 -12.68852 -12.42892 -12.34005 -12.31247 -12.11792 -12.07945 -11.98573 -11.69978 -11.67687 -11.45864 -11.08759 -10.92815 -10.72901 -10.11999 -9.61707 -9.00747 -7.90925 -5.20305 0.47362 1.14531 1.54323 1.55053 1.60994 1.64378 2.04256 2.18647 2.60666 3.14645 3.41137 3.41902 3.48270 3.73148 3.84568 3.91512 3.97956 4.02518 4.09638 4.19932 4.24423 4.28808 4.30704 4.36071 4.38767 4.43865 4.50060 4.53780 4.55196 4.68177 4.76868 4.83033 4.84431 4.91534 4.94127 4.95530 5.03359 5.06124 5.11105 5.12458 5.18005 5.25841 5.27682 5.34509 5.42242 5.46742 5.59100 6.30080 6.59073 7.19375 7.28940 7.38360 8.10150 8.33840 9.31667 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012166 B = 0.003110 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.954480 B = 9000.776513 C = 9989.270086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 C 0.030 3.970 4 N -0.396 5.396 5 O 0.083 5.917 6 C -0.014 4.014 7 C -0.041 4.041 8 C -0.145 4.145 9 C -0.189 4.189 10 C -0.055 4.055 11 C 0.531 3.469 12 O -0.569 6.569 13 N -0.606 5.606 14 C 0.086 3.914 15 C 0.165 3.835 16 H 0.066 0.934 17 N -0.722 5.722 18 C -0.242 4.242 19 H 0.081 0.919 20 C -0.067 4.067 21 N -0.966 5.966 22 Si 0.966 3.034 23 H -0.280 1.280 24 H -0.301 1.301 25 H -0.276 1.276 26 C -0.126 4.126 27 C 0.139 3.861 28 H 0.070 0.930 29 C -0.151 4.151 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.040 0.960 39 H 0.051 0.949 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.377 0.623 45 H 0.251 0.749 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.054 0.946 49 H 0.078 0.922 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.186 4.829 -16.781 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 C -0.129 4.129 4 N -0.104 5.104 5 O 0.022 5.978 6 C -0.078 4.078 7 C -0.079 4.079 8 C -0.203 4.203 9 C -0.193 4.193 10 C -0.095 4.095 11 C 0.320 3.680 12 O -0.449 6.449 13 N -0.340 5.340 14 C -0.040 4.040 15 C 0.054 3.946 16 H 0.084 0.916 17 N -0.361 5.361 18 C -0.374 4.374 19 H 0.099 0.901 20 C -0.260 4.260 21 N -0.616 5.616 22 Si 0.795 3.205 23 H -0.207 1.207 24 H -0.227 1.227 25 H -0.202 1.202 26 C -0.165 4.165 27 C 0.036 3.964 28 H 0.089 0.911 29 C -0.209 4.209 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.107 0.893 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.210 0.790 45 H 0.059 0.941 46 H 0.105 0.895 47 H 0.094 0.906 48 H 0.073 0.927 49 H 0.097 0.903 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.445 4.507 -18.573 19.420 hybrid contribution -0.580 -0.253 1.467 1.597 sum 2.865 4.253 -17.107 17.859 Atomic orbital electron populations 1.21692 0.92365 1.03457 1.02227 1.20018 0.97526 0.87187 1.03818 1.23757 1.00955 0.99715 0.88488 1.73769 1.18389 0.93452 1.24799 1.84726 1.63062 1.26712 1.23336 1.24784 1.00077 0.99706 0.83225 1.20324 0.97424 0.91094 0.99089 1.21725 0.93857 1.02729 1.01983 1.20402 1.08833 0.93779 0.96286 1.19916 0.95916 1.03978 0.89680 1.20412 0.89913 0.77657 0.79990 1.90671 1.41928 1.57286 1.54991 1.48612 1.15248 1.60868 1.09280 1.23177 0.90685 1.01041 0.89096 1.21440 0.92148 0.95757 0.85224 0.91644 1.42420 1.19868 1.60460 1.13337 1.19592 0.95086 1.24267 0.98431 0.90143 1.25459 1.01970 1.01367 0.97208 1.69791 1.39949 1.43267 1.08632 0.85331 0.80511 0.77998 0.76619 1.20670 1.22747 1.20191 1.22932 0.96283 1.02969 0.94295 1.21515 0.85662 0.96148 0.93073 0.91149 1.22032 0.97863 0.99097 1.01920 0.91936 0.93031 0.89872 0.90247 0.89650 0.87179 0.87111 0.89319 0.94038 0.92997 0.86225 0.85744 0.91736 0.90096 0.79042 0.94067 0.89511 0.90642 0.92664 0.90315 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.89 71.98 0.71 -1.67 16 2 C -0.05 -1.01 6.44 29.85 0.19 -0.82 16 3 C 0.03 0.79 6.58 43.57 0.29 1.07 16 4 N -0.40 -11.55 12.07 -49.56 -0.60 -12.15 16 5 O 0.08 2.24 11.20 71.65 0.80 3.04 16 6 C -0.01 -0.33 6.74 25.04 0.17 -0.16 16 7 C -0.04 -0.65 6.35 29.85 0.19 -0.46 16 8 C -0.15 -2.56 9.89 71.98 0.71 -1.85 16 9 C -0.19 -4.59 4.81 -19.74 -0.10 -4.69 16 10 C -0.06 -1.18 5.03 29.11 0.15 -1.04 16 11 C 0.53 14.34 7.63 87.66 0.67 15.01 16 12 O -0.57 -18.92 14.49 -3.02 -0.04 -18.96 16 13 N -0.61 -16.09 3.07 -788.05 -2.42 -18.50 16 14 C 0.09 2.42 6.38 86.86 0.55 2.98 16 15 C 0.16 5.47 3.71 46.38 0.17 5.64 16 16 H 0.07 2.22 8.09 -2.39 -0.02 2.20 16 17 N -0.72 -31.65 5.25 -316.37 -1.66 -33.31 16 18 C -0.24 -11.97 9.96 84.03 0.84 -11.14 16 19 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 20 C -0.07 -3.54 5.50 84.86 0.47 -3.08 16 21 N -0.97 -54.98 13.06 21.65 0.28 -54.69 16 22 Si 0.97 42.73 29.55 68.60 2.03 44.76 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 26 C -0.13 -3.50 6.13 31.78 0.19 -3.30 16 27 C 0.14 3.64 3.46 45.34 0.16 3.79 16 28 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 29 C -0.15 -3.67 9.11 71.98 0.66 -3.01 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.11 1.39 7.44 -2.38 -0.02 1.38 16 37 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.04 0.96 7.58 -2.39 -0.02 0.94 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.12 2.24 7.85 -2.39 -0.02 2.22 16 41 H 0.12 2.17 7.44 -2.39 -0.02 2.15 16 42 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.08 2.12 7.48 -2.39 -0.02 2.10 16 44 H 0.38 18.02 7.77 -92.70 -0.72 17.30 16 45 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 46 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.07 2.16 7.72 -2.39 -0.02 2.14 16 48 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 50 H 0.05 1.42 6.85 -2.39 -0.02 1.40 16 Total: -1.00 -64.96 407.85 4.62 -60.33 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: 0.21 Total: 32.20 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 6.02 Total: -2.71 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -4.39 Total: -118.66 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.76 Total: -15.92 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -64.96 4.62 -60.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988967217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.671 kcal (2) G-P(sol) polarization free energy of solvation -64.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds