Wall clock time and date at job start Tue Mar 31 2020 20:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50706 * 109.46496 * 2 1 4 4 N 1.30006 * 127.33957 * 270.14321 * 3 2 1 5 5 O 1.20657 * 112.30561 * 180.27928 * 4 3 2 6 6 C 1.33498 * 113.15312 * 359.73622 * 5 4 3 7 7 C 1.50703 * 126.82552 * 180.02562 * 6 5 4 8 8 C 1.37353 * 106.34077 * 359.97438 * 6 5 4 9 9 C 1.47397 * 128.56200 * 179.97438 * 8 6 5 10 10 O 1.21613 * 120.00360 * 90.02667 * 9 8 6 11 11 N 1.34774 * 120.00332 * 270.01974 * 9 8 6 12 12 C 1.46498 * 120.00348 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46771 * 35.01223 * 12 11 9 14 14 C 1.52995 * 109.47584 * 275.00780 * 12 11 9 15 15 C 1.53004 * 109.47070 * 155.00396 * 12 11 9 16 16 C 1.53040 * 109.45984 * 180.02562 * 15 12 11 17 17 C 1.53195 * 109.31169 * 181.37308 * 16 15 12 18 18 N 1.46928 * 108.77547 * 305.37044 * 17 16 15 19 19 C 1.36946 * 120.62648 * 233.58541 * 18 17 16 20 20 H 1.08001 * 119.99879 * 27.80702 * 19 18 17 21 21 C 1.38814 * 119.99719 * 207.80443 * 19 18 17 22 22 N 1.31620 * 119.99709 * 25.84717 * 21 19 18 23 23 Si 1.86797 * 119.99712 * 205.56717 * 21 19 18 24 24 H 1.48493 * 109.47196 * 60.00574 * 23 21 19 25 25 H 1.48500 * 109.46719 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47268 * 299.99796 * 23 21 19 27 27 C 1.46924 * 118.74378 * 53.85512 * 18 17 16 28 28 C 1.53039 * 109.45048 * 300.06912 * 15 12 11 29 29 H 1.09000 * 109.46888 * 299.99745 * 1 2 3 30 30 H 1.08993 * 109.46925 * 59.99928 * 1 2 3 31 31 H 1.08995 * 109.46766 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47131 * 240.00744 * 2 1 3 33 33 H 1.08999 * 109.46833 * 119.99624 * 2 1 3 34 34 H 1.08998 * 109.46922 * 269.99450 * 7 6 5 35 35 H 1.08998 * 109.47231 * 29.99699 * 7 6 5 36 36 H 1.08996 * 109.46642 * 150.00209 * 7 6 5 37 37 H 0.96999 * 119.99835 * 0.02562 * 11 9 8 38 38 H 1.08999 * 109.47402 * 60.00216 * 14 12 11 39 39 H 1.08999 * 109.47350 * 179.97438 * 14 12 11 40 40 H 1.08996 * 109.47212 * 299.99593 * 14 12 11 41 41 H 1.09003 * 109.46008 * 60.03509 * 15 12 11 42 42 H 1.09006 * 109.49747 * 61.42547 * 16 15 12 43 43 H 1.08994 * 109.52481 * 301.34165 * 16 15 12 44 44 H 1.08992 * 109.58544 * 185.58164 * 17 16 15 45 45 H 1.09001 * 109.70369 * 65.22301 * 17 16 15 46 46 H 0.96992 * 120.00366 * 4.05609 * 22 21 19 47 47 H 1.09007 * 109.58117 * 65.92823 * 27 18 17 48 48 H 1.08997 * 109.58707 * 186.35174 * 27 18 17 49 49 H 1.09004 * 109.49499 * 298.56924 * 28 15 12 50 50 H 1.08994 * 109.49949 * 58.63136 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2926 2.1653 -1.0336 5 8 2.6868 3.2618 -0.7207 6 6 2.7518 3.4389 0.6009 7 6 3.1987 4.6828 1.3248 8 6 2.3292 2.2622 1.1697 9 6 2.2094 1.9237 2.5992 10 8 1.1689 2.1401 3.1903 11 7 3.2530 1.3740 3.2514 12 6 3.1341 1.0381 4.6724 13 1 2.1188 0.7016 4.8824 14 6 3.4464 2.2750 5.5168 15 6 4.1227 -0.0777 5.0170 16 6 3.9979 -0.4289 6.5013 17 6 5.0127 -1.5222 6.8504 18 7 4.8134 -2.6598 5.9421 19 6 4.6219 -3.9223 6.4369 20 1 4.1776 -4.0586 7.4118 21 6 4.9990 -5.0268 5.6854 22 7 5.9555 -4.9167 4.7880 23 14 4.1541 -6.6711 5.9531 24 1 2.7011 -6.5312 5.6809 25 1 4.7354 -7.6818 5.0334 26 1 4.3549 -7.1078 7.3582 27 6 4.8294 -2.4182 4.4930 28 6 3.8108 -1.3142 4.1709 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.2738 4.6357 1.4982 35 1 2.9664 5.5588 0.7192 36 1 2.6793 4.7534 2.2804 37 1 4.0830 1.2016 2.7800 38 1 2.7422 3.0699 5.2714 39 1 3.3576 2.0251 6.5741 40 1 4.4617 2.6114 5.3068 41 1 5.1379 0.2591 4.8074 42 1 2.9898 -0.7895 6.7064 43 1 4.1966 0.4576 7.1034 44 1 4.8614 -1.8458 7.8801 45 1 6.0248 -1.1347 6.7340 46 1 6.4371 -4.0802 4.6926 47 1 5.8261 -2.1007 4.1865 48 1 4.5572 -3.3332 3.9670 49 1 2.8045 -1.6662 4.3983 50 1 3.8761 -1.0575 3.1136 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997421015.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:06 Heat of formation + Delta-G solvation = 1.160786 kcal Electronic energy + Delta-G solvation = -30161.796889 eV Core-core repulsion = 26191.226585 eV Total energy + Delta-G solvation = -3970.570304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.98357 -41.10828 -39.54836 -37.02852 -36.38581 -34.86100 -34.52185 -32.65866 -32.27464 -31.95194 -30.25733 -28.90934 -27.13363 -26.26974 -25.15018 -24.24986 -23.77164 -22.19996 -21.65330 -21.02209 -20.67395 -19.47279 -18.97938 -18.80600 -17.49930 -17.29546 -16.36361 -16.13180 -16.03874 -15.65205 -15.42429 -15.38074 -15.11820 -15.00608 -14.84490 -14.49451 -14.31909 -14.14236 -14.03480 -13.76637 -13.71131 -13.53909 -13.31885 -12.97145 -12.79403 -12.65999 -12.55895 -12.54364 -12.33136 -12.01796 -11.93177 -11.92188 -11.76603 -11.57583 -11.47779 -11.19409 -11.07663 -11.03872 -10.45622 -10.44084 -10.19689 -8.90099 -8.26304 -5.37921 0.25062 0.78342 1.25152 1.57207 1.64192 1.75904 1.83046 2.21347 2.65031 2.97833 3.19271 3.21292 3.53952 3.61136 3.75318 3.83310 3.89876 3.96261 4.05082 4.17629 4.25217 4.33880 4.36517 4.39272 4.44343 4.50225 4.59081 4.59797 4.65162 4.71803 4.78199 4.81372 4.85162 4.90430 4.95070 4.97927 5.04045 5.06641 5.11142 5.14952 5.16227 5.25001 5.25849 5.36430 5.41286 5.58655 5.85281 6.37639 6.40637 7.03189 7.08688 7.14655 7.80193 8.24298 9.00405 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013524 B = 0.003115 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.964587 B = 8987.912063 C =10191.948918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.052 4.052 3 C 0.053 3.947 4 N -0.374 5.374 5 O 0.094 5.906 6 C 0.036 3.964 7 C -0.080 4.080 8 C -0.277 4.277 9 C 0.609 3.391 10 O -0.564 6.564 11 N -0.697 5.697 12 C 0.154 3.846 13 H 0.066 0.934 14 C -0.156 4.156 15 C -0.073 4.073 16 C -0.114 4.114 17 C 0.142 3.858 18 N -0.620 5.620 19 C -0.358 4.358 20 H 0.048 0.952 21 C -0.074 4.074 22 N -0.941 5.941 23 Si 1.111 2.889 24 H -0.282 1.282 25 H -0.291 1.291 26 H -0.276 1.276 27 C 0.158 3.842 28 C -0.115 4.115 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.411 0.589 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.049 0.951 43 H 0.094 0.906 44 H 0.047 0.953 45 H 0.020 0.980 46 H 0.255 0.745 47 H 0.008 0.992 48 H 0.038 0.962 49 H 0.041 0.959 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.975 20.756 -6.912 22.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 C -0.109 4.109 4 N -0.081 5.081 5 O 0.034 5.966 6 C -0.028 4.028 7 C -0.136 4.136 8 C -0.284 4.284 9 C 0.394 3.606 10 O -0.443 6.443 11 N -0.347 5.347 12 C 0.050 3.950 13 H 0.084 0.916 14 C -0.214 4.214 15 C -0.092 4.092 16 C -0.153 4.153 17 C 0.017 3.983 18 N -0.345 5.345 19 C -0.487 4.487 20 H 0.065 0.935 21 C -0.271 4.271 22 N -0.583 5.583 23 Si 0.935 3.065 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.202 1.202 27 C 0.032 3.968 28 C -0.154 4.154 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.111 0.889 37 H 0.248 0.752 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.067 0.933 43 H 0.113 0.887 44 H 0.065 0.935 45 H 0.038 0.962 46 H 0.065 0.935 47 H 0.026 0.974 48 H 0.056 0.944 49 H 0.059 0.941 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.848 19.167 -8.287 21.685 hybrid contribution 0.498 0.870 1.056 1.456 sum -5.350 20.038 -7.230 21.964 Atomic orbital electron populations 1.21678 0.93089 1.03406 1.01770 1.20097 0.97219 0.86964 1.04694 1.25022 1.00097 0.99186 0.86594 1.73592 1.17539 0.93147 1.23775 1.84514 1.62388 1.26468 1.23213 1.25271 0.96351 0.98011 0.83183 1.20727 1.04145 0.89683 0.99082 1.21893 1.15136 0.96647 0.94735 1.16877 0.83108 0.76662 0.83938 1.90805 1.29918 1.54732 1.68814 1.45990 1.15770 1.61499 1.11427 1.20993 0.99503 0.95081 0.79402 0.91561 1.22156 1.02501 0.96331 1.00398 1.21207 0.99106 0.93121 0.95766 1.21939 0.99328 0.98771 0.95269 1.21058 0.95885 0.87986 0.93365 1.44391 1.84722 1.03971 1.01371 1.20209 1.37981 0.85099 1.05454 0.93468 1.27088 0.96937 1.04971 0.98077 1.70910 1.19652 1.27923 1.39824 0.82903 0.75147 0.72190 0.76212 1.20865 1.21714 1.20196 1.20875 0.94976 0.96383 0.84575 1.21984 0.98642 0.95646 0.99105 0.93616 0.92245 0.89856 0.88399 0.89615 0.86235 0.86842 0.88922 0.75237 0.92798 0.90241 0.90647 0.89945 0.93264 0.88748 0.93463 0.96246 0.93533 0.97367 0.94354 0.94056 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.90 71.98 0.71 -2.22 16 2 C -0.05 -1.13 6.55 29.85 0.20 -0.93 16 3 C 0.05 1.28 6.84 45.16 0.31 1.59 16 4 N -0.37 -9.21 12.01 -44.78 -0.54 -9.75 16 5 O 0.09 1.98 11.06 76.94 0.85 2.84 16 6 C 0.04 0.63 7.55 25.48 0.19 0.83 16 7 C -0.08 -0.69 10.33 71.24 0.74 0.05 16 8 C -0.28 -6.30 6.24 -18.75 -0.12 -6.42 16 9 C 0.61 15.29 7.57 86.66 0.66 15.94 16 10 O -0.56 -18.29 16.77 -4.07 -0.07 -18.36 16 11 N -0.70 -14.88 4.36 -445.83 -1.94 -16.82 16 12 C 0.15 3.60 2.16 44.99 0.10 3.70 16 13 H 0.07 1.91 7.58 -2.39 -0.02 1.89 16 14 C -0.16 -2.88 9.13 71.98 0.66 -2.22 16 15 C -0.07 -1.98 1.79 -10.77 -0.02 -2.00 16 16 C -0.11 -3.39 5.04 30.67 0.15 -3.23 16 17 C 0.14 5.59 6.51 86.36 0.56 6.15 16 18 N -0.62 -30.42 2.85 -698.24 -1.99 -32.41 16 19 C -0.36 -20.03 9.49 84.03 0.80 -19.23 16 20 H 0.05 2.66 7.95 -2.91 -0.02 2.64 16 21 C -0.07 -4.22 4.66 84.86 0.40 -3.82 16 22 N -0.94 -57.02 12.46 21.65 0.27 -56.75 16 23 Si 1.11 51.15 29.99 68.60 2.06 53.21 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 27 C 0.16 7.16 4.72 86.51 0.41 7.57 16 28 C -0.11 -3.94 5.24 30.82 0.16 -3.78 16 29 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.09 0.92 8.11 -2.39 -0.02 0.90 16 37 H 0.41 7.37 8.37 -92.71 -0.78 6.59 16 38 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.37 6.40 -2.39 -0.02 1.36 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 43 H 0.09 2.15 6.36 -2.39 -0.02 2.14 16 44 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 45 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.25 15.62 6.69 -92.71 -0.62 15.00 16 47 H 0.01 0.39 7.87 -2.38 -0.02 0.37 16 48 H 0.04 2.03 6.31 -2.39 -0.02 2.01 16 49 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 50 H 0.07 2.05 7.40 -2.39 -0.02 2.03 16 Total: -1.00 -73.25 401.33 4.85 -68.40 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.31 Total: 17.67 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 5.90 Total: -8.02 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -4.20 Total: -115.73 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.78 Total: -15.53 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 2.06 Total: 53.21 kcal Total: -73.25 4.85 -68.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997421015.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.560 kcal (2) G-P(sol) polarization free energy of solvation -73.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds