Wall clock time and date at job start Tue Mar 31 2020 19:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47005 * 2 1 4 4 O 1.33495 * 126.83144 * 270.00329 * 3 2 1 5 5 N 1.20650 * 113.16002 * 179.97438 * 4 3 2 6 6 C 1.30012 * 112.30076 * 359.73547 * 5 4 3 7 7 C 1.50700 * 127.33646 * 180.26957 * 6 5 4 8 8 C 1.37363 * 126.83179 * 89.99526 * 3 2 1 9 9 C 1.47397 * 128.55981 * 359.97055 * 8 3 2 10 10 O 1.21612 * 120.00058 * 89.99881 * 9 8 3 11 11 N 1.34771 * 120.00015 * 269.99311 * 9 8 3 12 12 C 1.46510 * 120.00215 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46311 * 34.99925 * 12 11 9 14 14 C 1.52996 * 109.46935 * 275.00384 * 12 11 9 15 15 C 1.52997 * 109.47278 * 155.00058 * 12 11 9 16 16 C 1.53032 * 109.45907 * 179.97438 * 15 12 11 17 17 C 1.53195 * 109.31562 * 181.37272 * 16 15 12 18 18 N 1.46929 * 108.77153 * 305.36666 * 17 16 15 19 19 C 1.36936 * 120.63102 * 233.57735 * 18 17 16 20 20 H 1.08001 * 119.99493 * 27.81488 * 19 18 17 21 21 C 1.38811 * 120.00212 * 207.81031 * 19 18 17 22 22 N 1.31616 * 119.99796 * 25.85089 * 21 19 18 23 23 Si 1.86798 * 119.99834 * 205.57383 * 21 19 18 24 24 H 1.48497 * 109.47151 * 90.00469 * 23 21 19 25 25 H 1.48500 * 109.46743 * 210.00191 * 23 21 19 26 26 H 1.48499 * 109.47212 * 329.99989 * 23 21 19 27 27 C 1.46929 * 118.73997 * 53.86008 * 18 17 16 28 28 C 1.53036 * 109.44712 * 300.06370 * 15 12 11 29 29 H 1.09001 * 109.47707 * 60.00291 * 1 2 3 30 30 H 1.09007 * 109.47101 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47703 * 299.99474 * 1 2 3 32 32 H 1.08996 * 109.47204 * 240.00607 * 2 1 3 33 33 H 1.09001 * 109.47707 * 119.99709 * 2 1 3 34 34 H 1.09006 * 109.47581 * 270.14844 * 7 6 5 35 35 H 1.09000 * 109.47237 * 30.14814 * 7 6 5 36 36 H 1.09003 * 109.47527 * 150.15068 * 7 6 5 37 37 H 0.96998 * 120.00531 * 0.02562 * 11 9 8 38 38 H 1.08996 * 109.47551 * 299.99638 * 14 12 11 39 39 H 1.09006 * 109.47269 * 59.99931 * 14 12 11 40 40 H 1.08999 * 109.47311 * 179.97438 * 14 12 11 41 41 H 1.09003 * 109.45780 * 60.02751 * 15 12 11 42 42 H 1.09001 * 109.50032 * 61.42134 * 16 15 12 43 43 H 1.08997 * 109.52979 * 301.34499 * 16 15 12 44 44 H 1.08992 * 109.58851 * 185.57974 * 17 16 15 45 45 H 1.09001 * 109.69842 * 65.22247 * 17 16 15 46 46 H 0.96996 * 120.00373 * 4.05514 * 22 21 19 47 47 H 1.09003 * 109.58376 * 65.92241 * 27 18 17 48 48 H 1.08993 * 109.58698 * 186.34836 * 27 18 17 49 49 H 1.09004 * 109.50061 * 298.56746 * 28 15 12 50 50 H 1.08995 * 109.50113 * 58.64006 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2989 2.1753 -1.0685 5 7 2.6892 3.2808 -0.7833 6 6 2.7487 3.4667 0.5021 7 6 3.1816 4.7155 1.2259 8 6 2.3066 2.1972 1.0995 9 6 2.1821 1.8470 2.5258 10 8 3.1235 1.3510 3.1146 11 7 1.0249 2.0764 3.1774 12 6 0.9012 1.7288 4.5953 13 1 1.8544 1.8996 5.0956 14 6 0.5130 0.2548 4.7270 15 6 -0.1775 2.6001 5.2418 16 6 -0.3069 2.2364 6.7226 17 6 -1.4113 3.0865 7.3587 18 7 -1.1193 4.5046 7.1089 19 6 -1.0648 5.3987 8.1447 20 1 -0.7883 5.0634 9.1334 21 6 -1.3649 6.7359 7.9239 22 7 -2.1601 7.0768 6.9321 23 14 -0.6463 8.0508 9.0392 24 1 0.6549 8.5091 8.4896 25 1 -1.5833 9.2003 9.1167 26 1 -0.4394 7.4885 10.3979 27 6 -0.8931 4.9465 5.7260 28 6 0.2106 4.0744 5.1084 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.2567 4.6792 1.4022 35 1 2.9424 5.5887 0.6189 36 1 2.6591 4.7821 2.1802 37 1 0.2739 2.4718 2.7078 38 1 -0.4402 0.0840 4.2266 39 1 1.2816 -0.3659 4.2664 40 1 0.4214 -0.0040 5.7818 41 1 -1.1307 2.4289 4.7415 42 1 0.6387 2.4304 7.2290 43 1 -0.5603 1.1805 6.8177 44 1 -1.4408 2.9031 8.4326 45 1 -2.3739 2.8283 6.9173 46 1 -2.5832 6.3911 6.3920 47 1 -1.8132 4.8363 5.1521 48 1 -0.5807 5.9907 5.7225 49 1 1.1515 4.2516 5.6296 50 1 0.3257 4.3264 4.0542 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997422263.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:48 Heat of formation + Delta-G solvation = 20.345470 kcal Electronic energy + Delta-G solvation = -30212.516075 eV Core-core repulsion = 26242.777682 eV Total energy + Delta-G solvation = -3969.738394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.10005 -40.01322 -38.12280 -35.57690 -35.17825 -34.74974 -33.11057 -31.24199 -30.42431 -30.40665 -29.01578 -28.70954 -25.67777 -25.00832 -24.04555 -22.87602 -22.23723 -21.08599 -20.59656 -20.06850 -19.24927 -18.06643 -17.97091 -17.37095 -16.57908 -16.22100 -15.48176 -14.83258 -14.58634 -14.46757 -14.18644 -14.01249 -13.61741 -13.57199 -13.53177 -13.47385 -13.37817 -13.23110 -13.14953 -12.84862 -12.56871 -12.45216 -12.02410 -11.87488 -11.77193 -11.60910 -11.46723 -11.20657 -10.83795 -10.69984 -10.45789 -10.39793 -10.28313 -10.09217 -10.08633 -9.94303 -9.76944 -9.66056 -9.31568 -9.12313 -8.37083 -6.89417 -6.10589 -3.23943 1.05011 1.69671 2.25560 2.56724 3.12334 3.49972 3.51143 3.67912 3.88548 3.97526 4.49283 4.53885 4.58048 4.68834 4.75733 4.86370 4.90924 5.06908 5.15103 5.19431 5.26835 5.29347 5.37232 5.39317 5.42730 5.43040 5.47821 5.54308 5.59670 5.68083 5.73096 5.82167 5.84846 5.92107 5.98626 6.11800 6.15003 6.27217 6.37523 6.45715 6.48902 6.59616 6.69397 6.80016 7.03800 7.15638 7.34465 7.99548 8.00242 8.01598 8.56129 9.10329 9.83495 10.28208 11.19530 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.003017 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.911686 B = 9278.144028 C =10302.740142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 C 0.018 3.982 4 O 0.097 5.903 5 N -0.356 5.356 6 C 0.058 3.942 7 C -0.080 4.080 8 C -0.248 4.248 9 C 0.601 3.399 10 O -0.527 6.527 11 N -0.706 5.706 12 C 0.144 3.856 13 H 0.088 0.912 14 C -0.162 4.162 15 C -0.084 4.084 16 C -0.125 4.125 17 C 0.148 3.852 18 N -0.599 5.599 19 C -0.350 4.350 20 H 0.056 0.944 21 C -0.024 4.024 22 N -0.916 5.916 23 Si 1.067 2.933 24 H -0.293 1.293 25 H -0.290 1.290 26 H -0.292 1.292 27 C 0.152 3.848 28 C -0.129 4.129 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.401 0.599 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.014 0.986 46 H 0.268 0.732 47 H 0.015 0.985 48 H 0.078 0.922 49 H 0.059 0.941 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.670 -14.571 -14.138 21.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.085 4.085 3 C -0.045 4.045 4 O 0.035 5.965 5 N -0.063 5.063 6 C -0.104 4.104 7 C -0.138 4.138 8 C -0.255 4.255 9 C 0.384 3.616 10 O -0.403 6.403 11 N -0.357 5.357 12 C 0.040 3.960 13 H 0.106 0.894 14 C -0.220 4.220 15 C -0.103 4.103 16 C -0.165 4.165 17 C 0.022 3.978 18 N -0.323 5.323 19 C -0.479 4.479 20 H 0.074 0.926 21 C -0.226 4.226 22 N -0.556 5.556 23 Si 0.897 3.103 24 H -0.220 1.220 25 H -0.216 1.216 26 H -0.219 1.219 27 C 0.026 3.974 28 C -0.168 4.168 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.236 0.764 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.032 0.968 46 H 0.079 0.921 47 H 0.033 0.967 48 H 0.096 0.904 49 H 0.078 0.922 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.700 -12.519 -14.454 20.262 hybrid contribution -0.500 -1.736 0.202 1.817 sum 6.201 -14.255 -14.252 21.089 Atomic orbital electron populations 1.21798 0.92749 1.03223 1.03047 1.20257 0.97128 0.85880 1.05277 1.24645 0.98416 0.96263 0.85199 1.84526 1.61549 1.17476 1.32932 1.73619 1.17524 0.98528 1.16628 1.24793 1.00165 0.96521 0.88929 1.20268 1.02588 0.91096 0.99833 1.21975 1.12839 0.95475 0.95246 1.16839 0.82887 0.78004 0.83833 1.90825 1.38532 1.43431 1.67550 1.46101 1.14426 1.63154 1.11995 1.21218 1.00773 0.94382 0.79589 0.89351 1.22210 1.01292 0.95808 1.02731 1.21321 0.96893 0.95356 0.96716 1.22068 1.01390 0.98844 0.94183 1.20877 0.93568 0.85358 0.98033 1.44136 1.81858 1.03363 1.02958 1.20008 1.45686 0.91349 0.90901 0.92617 1.25831 0.97042 0.97952 1.01802 1.70767 1.25669 1.37103 1.22096 0.83479 0.76101 0.75826 0.74894 1.22047 1.21609 1.21865 1.21011 0.93434 0.98089 0.84904 1.22180 1.01081 0.94306 0.99230 0.91721 0.90811 0.91948 0.88660 0.88315 0.89540 0.89727 0.89497 0.76423 0.92542 0.92574 0.90943 0.91457 0.92006 0.92482 0.92643 0.96777 0.92071 0.96743 0.90359 0.92234 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.15 0.37 -0.50 16 2 C -0.05 -0.32 6.38 -27.89 -0.18 -0.50 16 3 C 0.02 0.19 6.80 -34.63 -0.24 -0.05 16 4 O 0.10 1.10 11.06 18.65 0.21 1.31 16 5 N -0.36 -4.56 12.01 34.78 0.42 -4.14 16 6 C 0.06 0.72 7.59 -79.77 -0.61 0.11 16 7 C -0.08 -0.84 10.49 36.01 0.38 -0.46 16 8 C -0.25 -2.99 6.24 -102.89 -0.64 -3.63 16 9 C 0.60 7.93 7.57 -12.53 -0.09 7.83 16 10 O -0.53 -8.78 16.77 5.27 0.09 -8.70 16 11 N -0.71 -8.22 4.36 -54.89 -0.24 -8.46 16 12 C 0.14 1.83 2.16 -67.93 -0.15 1.69 16 13 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 14 C -0.16 -1.77 9.13 37.16 0.34 -1.43 16 15 C -0.08 -1.22 1.78 -90.59 -0.16 -1.38 16 16 C -0.13 -1.98 5.04 -26.61 -0.13 -2.12 16 17 C 0.15 2.96 6.51 -3.71 -0.02 2.93 16 18 N -0.60 -14.50 2.85 -172.05 -0.49 -14.99 16 19 C -0.35 -9.62 9.48 -15.06 -0.14 -9.77 16 20 H 0.06 1.55 7.95 -52.49 -0.42 1.13 16 21 C -0.02 -0.68 4.66 -17.43 -0.08 -0.76 16 22 N -0.92 -27.01 12.46 55.49 0.69 -26.32 16 23 Si 1.07 25.11 29.99 -169.99 -5.10 20.01 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.15 3.37 4.72 -3.48 -0.02 3.36 16 28 C -0.13 -2.23 5.24 -26.39 -0.14 -2.37 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.10 0.71 8.11 -51.93 -0.42 0.29 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.40 4.10 8.37 -40.82 -0.34 3.76 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.77 6.40 -51.93 -0.33 0.43 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.75 6.36 -51.93 -0.33 0.42 16 44 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 45 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.27 7.94 6.69 -40.82 -0.27 7.67 16 47 H 0.01 0.33 7.87 -51.93 -0.41 -0.08 16 48 H 0.08 2.00 6.31 -51.93 -0.33 1.67 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.05 0.73 7.40 -51.93 -0.38 0.35 16 LS Contribution 401.33 15.07 6.05 6.05 Total: -1.00 -32.56 401.33 -8.22 -40.79 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.33 Total: 1.49 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.52 Total: -7.05 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.38 Total: -53.90 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.29 Total: -7.39 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.10 Total: 20.01 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.56 -8.22 -40.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997422263.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.132 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds