Wall clock time and date at job start Tue Mar 31 2020 19:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47005 * 2 1 4 4 O 1.33495 * 126.83144 * 270.00329 * 3 2 1 5 5 N 1.20650 * 113.16002 * 179.97438 * 4 3 2 6 6 C 1.30012 * 112.30076 * 359.73547 * 5 4 3 7 7 C 1.50700 * 127.33646 * 180.26957 * 6 5 4 8 8 C 1.37363 * 126.83179 * 89.99526 * 3 2 1 9 9 C 1.47397 * 128.55981 * 359.97055 * 8 3 2 10 10 O 1.21612 * 120.00058 * 89.99881 * 9 8 3 11 11 N 1.34771 * 120.00015 * 269.99311 * 9 8 3 12 12 C 1.46510 * 120.00215 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.46311 * 34.99925 * 12 11 9 14 14 C 1.52996 * 109.46935 * 275.00384 * 12 11 9 15 15 C 1.52997 * 109.47278 * 155.00058 * 12 11 9 16 16 C 1.53032 * 109.45907 * 179.97438 * 15 12 11 17 17 C 1.53195 * 109.31562 * 181.37272 * 16 15 12 18 18 N 1.46929 * 108.77153 * 305.36666 * 17 16 15 19 19 C 1.36936 * 120.63102 * 233.57735 * 18 17 16 20 20 H 1.08001 * 119.99493 * 27.81488 * 19 18 17 21 21 C 1.38811 * 120.00212 * 207.81031 * 19 18 17 22 22 N 1.31616 * 119.99796 * 25.85089 * 21 19 18 23 23 Si 1.86798 * 119.99834 * 205.57383 * 21 19 18 24 24 H 1.48497 * 109.47151 * 90.00469 * 23 21 19 25 25 H 1.48500 * 109.46743 * 210.00191 * 23 21 19 26 26 H 1.48499 * 109.47212 * 329.99989 * 23 21 19 27 27 C 1.46929 * 118.73997 * 53.86008 * 18 17 16 28 28 C 1.53036 * 109.44712 * 300.06370 * 15 12 11 29 29 H 1.09001 * 109.47707 * 60.00291 * 1 2 3 30 30 H 1.09007 * 109.47101 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47703 * 299.99474 * 1 2 3 32 32 H 1.08996 * 109.47204 * 240.00607 * 2 1 3 33 33 H 1.09001 * 109.47707 * 119.99709 * 2 1 3 34 34 H 1.09006 * 109.47581 * 270.14844 * 7 6 5 35 35 H 1.09000 * 109.47237 * 30.14814 * 7 6 5 36 36 H 1.09003 * 109.47527 * 150.15068 * 7 6 5 37 37 H 0.96998 * 120.00531 * 0.02562 * 11 9 8 38 38 H 1.08996 * 109.47551 * 299.99638 * 14 12 11 39 39 H 1.09006 * 109.47269 * 59.99931 * 14 12 11 40 40 H 1.08999 * 109.47311 * 179.97438 * 14 12 11 41 41 H 1.09003 * 109.45780 * 60.02751 * 15 12 11 42 42 H 1.09001 * 109.50032 * 61.42134 * 16 15 12 43 43 H 1.08997 * 109.52979 * 301.34499 * 16 15 12 44 44 H 1.08992 * 109.58851 * 185.57974 * 17 16 15 45 45 H 1.09001 * 109.69842 * 65.22247 * 17 16 15 46 46 H 0.96996 * 120.00373 * 4.05514 * 22 21 19 47 47 H 1.09003 * 109.58376 * 65.92241 * 27 18 17 48 48 H 1.08993 * 109.58698 * 186.34836 * 27 18 17 49 49 H 1.09004 * 109.50061 * 298.56746 * 28 15 12 50 50 H 1.08995 * 109.50113 * 58.64006 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2989 2.1753 -1.0685 5 7 2.6892 3.2808 -0.7833 6 6 2.7487 3.4667 0.5021 7 6 3.1816 4.7155 1.2259 8 6 2.3066 2.1972 1.0995 9 6 2.1821 1.8470 2.5258 10 8 3.1235 1.3510 3.1146 11 7 1.0249 2.0764 3.1774 12 6 0.9012 1.7288 4.5953 13 1 1.8544 1.8996 5.0956 14 6 0.5130 0.2548 4.7270 15 6 -0.1775 2.6001 5.2418 16 6 -0.3069 2.2364 6.7226 17 6 -1.4113 3.0865 7.3587 18 7 -1.1193 4.5046 7.1089 19 6 -1.0648 5.3987 8.1447 20 1 -0.7883 5.0634 9.1334 21 6 -1.3649 6.7359 7.9239 22 7 -2.1601 7.0768 6.9321 23 14 -0.6463 8.0508 9.0392 24 1 0.6549 8.5091 8.4896 25 1 -1.5833 9.2003 9.1167 26 1 -0.4394 7.4885 10.3979 27 6 -0.8931 4.9465 5.7260 28 6 0.2106 4.0744 5.1084 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.2567 4.6792 1.4022 35 1 2.9424 5.5887 0.6189 36 1 2.6591 4.7821 2.1802 37 1 0.2739 2.4718 2.7078 38 1 -0.4402 0.0840 4.2266 39 1 1.2816 -0.3659 4.2664 40 1 0.4214 -0.0040 5.7818 41 1 -1.1307 2.4289 4.7415 42 1 0.6387 2.4304 7.2290 43 1 -0.5603 1.1805 6.8177 44 1 -1.4408 2.9031 8.4326 45 1 -2.3739 2.8283 6.9173 46 1 -2.5832 6.3911 6.3920 47 1 -1.8132 4.8363 5.1521 48 1 -0.5807 5.9907 5.7225 49 1 1.1515 4.2516 5.6296 50 1 0.3257 4.3264 4.0542 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997422263.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:47 Heat of formation + Delta-G solvation = 1.336988 kcal Electronic energy + Delta-G solvation = -30213.340345 eV Core-core repulsion = 26242.777682 eV Total energy + Delta-G solvation = -3970.562663 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.99836 -41.12099 -39.55316 -37.02470 -35.88549 -35.62053 -34.68035 -32.62978 -31.95734 -31.32853 -30.17785 -29.79496 -27.14205 -26.19312 -24.75608 -24.31400 -23.77662 -22.29747 -21.69790 -21.06293 -20.65315 -19.46404 -18.91619 -18.87243 -17.50763 -17.29712 -16.39578 -16.23993 -16.04372 -15.55331 -15.43352 -15.39133 -15.08227 -14.84728 -14.71717 -14.49590 -14.41715 -14.24550 -14.02351 -13.90588 -13.70769 -13.49242 -13.32593 -12.96773 -12.79641 -12.58208 -12.54634 -12.51330 -12.32672 -12.01698 -11.91082 -11.88120 -11.77358 -11.57416 -11.48347 -11.19573 -11.07835 -11.00728 -10.51839 -10.44897 -10.20363 -8.90449 -8.26119 -5.38124 0.22251 0.77432 1.23768 1.57442 1.64057 1.72189 1.81620 2.18834 2.64820 3.02602 3.16194 3.21061 3.53823 3.60063 3.73068 3.80141 3.88890 3.96219 4.09296 4.21634 4.25685 4.35605 4.39162 4.44203 4.44544 4.48406 4.50190 4.59825 4.62532 4.71815 4.77086 4.81509 4.90383 4.96361 4.97547 5.00548 5.03530 5.04148 5.11073 5.16267 5.25026 5.25958 5.30872 5.36605 5.40866 5.58659 5.85578 6.36260 6.40595 7.01783 7.08604 7.12819 7.80049 8.24141 9.00438 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.003017 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.911686 B = 9278.144028 C =10302.740142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 C 0.038 3.962 4 O 0.096 5.904 5 N -0.375 5.375 6 C 0.049 3.951 7 C -0.081 4.081 8 C -0.273 4.273 9 C 0.610 3.390 10 O -0.565 6.565 11 N -0.696 5.696 12 C 0.154 3.846 13 H 0.067 0.933 14 C -0.156 4.156 15 C -0.073 4.073 16 C -0.114 4.114 17 C 0.142 3.858 18 N -0.620 5.620 19 C -0.356 4.356 20 H 0.047 0.953 21 C -0.075 4.075 22 N -0.942 5.942 23 Si 1.113 2.887 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.274 1.274 27 C 0.158 3.842 28 C -0.115 4.115 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.411 0.589 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.049 0.951 43 H 0.094 0.906 44 H 0.047 0.953 45 H 0.020 0.980 46 H 0.255 0.745 47 H 0.008 0.992 48 H 0.038 0.962 49 H 0.041 0.959 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.695 -16.635 -14.932 23.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.086 4.086 3 C -0.026 4.026 4 O 0.035 5.965 5 N -0.083 5.083 6 C -0.113 4.113 7 C -0.138 4.138 8 C -0.280 4.280 9 C 0.394 3.606 10 O -0.444 6.444 11 N -0.346 5.346 12 C 0.050 3.950 13 H 0.085 0.915 14 C -0.214 4.214 15 C -0.092 4.092 16 C -0.153 4.153 17 C 0.017 3.983 18 N -0.345 5.345 19 C -0.486 4.486 20 H 0.065 0.935 21 C -0.271 4.271 22 N -0.584 5.584 23 Si 0.938 3.062 24 H -0.212 1.212 25 H -0.220 1.220 26 H -0.200 1.200 27 C 0.032 3.968 28 C -0.154 4.154 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.137 0.863 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.247 0.753 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.112 0.888 44 H 0.065 0.935 45 H 0.038 0.962 46 H 0.065 0.935 47 H 0.026 0.974 48 H 0.056 0.944 49 H 0.060 0.940 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.708 -14.618 -15.261 22.172 hybrid contribution -0.548 -1.154 0.437 1.350 sum 6.161 -15.771 -14.825 22.505 Atomic orbital electron populations 1.21805 0.91586 1.04412 1.02753 1.20490 0.97937 0.83721 1.06407 1.25249 0.96208 0.96991 0.84192 1.84505 1.61402 1.17297 1.33256 1.73609 1.18521 0.99309 1.16868 1.25091 1.00023 0.97170 0.89039 1.20325 1.02882 0.90994 0.99647 1.21905 1.14969 0.96099 0.95054 1.16866 0.82452 0.77163 0.84073 1.90807 1.39775 1.45310 1.68458 1.45990 1.14429 1.62603 1.11550 1.21002 0.98864 0.95441 0.79668 0.91488 1.22157 1.02099 0.93646 1.03487 1.21201 0.98192 0.93387 0.96398 1.21937 0.99040 1.00031 0.94295 1.21058 0.95355 0.83700 0.98179 1.44399 1.82436 1.04692 1.02931 1.20231 1.44504 0.92292 0.91544 0.93483 1.27079 0.97111 1.00243 1.02682 1.70880 1.27522 1.36577 1.23411 0.82857 0.75472 0.73553 0.74274 1.21223 1.21980 1.19950 1.20873 0.94538 0.96893 0.84509 1.21988 0.98157 0.95596 0.99668 0.91600 0.88892 0.92678 0.86344 0.88337 0.88976 0.88737 0.89866 0.75294 0.90660 0.92836 0.90208 0.89969 0.93233 0.88751 0.93471 0.96246 0.93498 0.97383 0.94362 0.93999 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 71.98 0.71 -0.56 16 2 C -0.05 -0.52 6.38 29.85 0.19 -0.33 16 3 C 0.04 0.70 6.80 25.48 0.17 0.87 16 4 O 0.10 2.05 11.06 76.98 0.85 2.90 16 5 N -0.38 -9.30 12.01 -44.80 -0.54 -9.84 16 6 C 0.05 1.17 7.59 45.15 0.34 1.51 16 7 C -0.08 -1.66 10.49 71.24 0.75 -0.92 16 8 C -0.27 -6.28 6.24 -18.75 -0.12 -6.39 16 9 C 0.61 15.36 7.57 86.66 0.66 16.02 16 10 O -0.56 -18.42 16.77 -4.07 -0.07 -18.48 16 11 N -0.70 -14.85 4.36 -445.82 -1.94 -16.80 16 12 C 0.15 3.59 2.16 44.99 0.10 3.68 16 13 H 0.07 1.92 7.58 -2.39 -0.02 1.90 16 14 C -0.16 -2.87 9.13 71.98 0.66 -2.22 16 15 C -0.07 -1.96 1.78 -10.77 -0.02 -1.98 16 16 C -0.11 -3.37 5.04 30.67 0.15 -3.21 16 17 C 0.14 5.57 6.51 86.36 0.56 6.13 16 18 N -0.62 -30.35 2.85 -698.24 -1.99 -32.34 16 19 C -0.36 -19.89 9.48 84.03 0.80 -19.10 16 20 H 0.05 2.66 7.95 -2.91 -0.02 2.64 16 21 C -0.07 -4.24 4.66 84.86 0.40 -3.84 16 22 N -0.94 -57.02 12.46 21.65 0.27 -56.75 16 23 Si 1.11 51.29 29.99 68.60 2.06 53.35 16 24 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 26 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 27 C 0.16 7.14 4.72 86.51 0.41 7.55 16 28 C -0.11 -3.93 5.24 30.82 0.16 -3.77 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 30 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 1.16 8.11 -2.39 -0.02 1.14 16 34 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.41 7.41 8.37 -92.71 -0.78 6.64 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.08 1.37 6.40 -2.39 -0.02 1.36 16 41 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.09 2.14 6.36 -2.39 -0.02 2.12 16 44 H 0.05 1.89 7.93 -2.39 -0.02 1.87 16 45 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.26 15.63 6.69 -92.71 -0.62 15.01 16 47 H 0.01 0.38 7.87 -2.39 -0.02 0.36 16 48 H 0.04 2.02 6.31 -2.39 -0.02 2.00 16 49 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 50 H 0.07 2.04 7.40 -2.39 -0.02 2.03 16 Total: -1.00 -72.68 401.33 4.87 -67.81 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.31 Total: 16.70 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 5.92 Total: -6.55 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -4.20 Total: -115.73 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.78 Total: -15.58 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 2.06 Total: 53.35 kcal Total: -72.68 4.87 -67.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997422263.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.144 kcal (2) G-P(sol) polarization free energy of solvation -72.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds