Wall clock time and date at job start Tue Mar 31 2020 19:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.47025 * 2 1 4 4 O 1.33490 * 126.82969 * 270.02470 * 3 2 1 5 5 N 1.20656 * 113.15598 * 179.97438 * 4 3 2 6 6 C 1.30011 * 112.30062 * 0.02562 * 5 4 3 7 7 C 1.37359 * 126.82581 * 89.71472 * 3 2 1 8 8 C 1.47397 * 128.56709 * 0.02562 * 7 3 2 9 9 O 1.21613 * 119.99643 * 351.68000 * 8 7 3 10 10 N 1.34766 * 120.00007 * 171.68698 * 8 7 3 11 11 C 1.46501 * 120.00518 * 0.94176 * 10 8 7 12 12 C 1.52998 * 109.47180 * 84.28343 * 11 10 8 13 13 C 1.46510 * 120.00003 * 180.94587 * 10 8 7 14 14 H 1.08997 * 108.44663 * 179.97438 * 13 10 8 15 15 C 1.52565 * 108.51118 * 62.30505 * 13 10 8 16 16 C 1.51039 * 109.27424 * 153.60861 * 15 13 10 17 17 C 1.53944 * 109.96995 * 92.06557 * 16 15 13 18 18 N 1.47598 * 112.14338 * 319.41823 * 17 16 15 19 19 C 1.36936 * 118.64644 * 137.89130 * 18 17 16 20 20 H 1.08006 * 119.99834 * 318.50823 * 19 18 17 21 21 C 1.38813 * 120.00248 * 138.50379 * 19 18 17 22 22 N 1.31623 * 119.99696 * 161.57356 * 21 19 18 23 23 Si 1.86797 * 120.00179 * 341.58386 * 21 19 18 24 24 H 1.48494 * 109.47409 * 90.33518 * 23 21 19 25 25 H 1.48500 * 109.46920 * 210.33722 * 23 21 19 26 26 H 1.48497 * 109.47037 * 330.33413 * 23 21 19 27 27 C 1.44578 * 122.71324 * 317.86776 * 18 17 16 28 28 C 1.47095 * 108.50931 * 297.68846 * 13 10 8 29 29 H 1.09001 * 109.47127 * 59.99386 * 1 2 3 30 30 H 1.09001 * 109.47309 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46674 * 299.99750 * 1 2 3 32 32 H 1.09001 * 109.46674 * 240.00250 * 2 1 3 33 33 H 1.08996 * 109.47511 * 120.00897 * 2 1 3 34 34 H 1.08003 * 127.33481 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.47592 * 204.28569 * 11 10 8 36 36 H 1.09007 * 109.46820 * 324.28397 * 11 10 8 37 37 H 1.08992 * 109.47269 * 180.02562 * 12 11 10 38 38 H 1.08999 * 109.47043 * 300.00562 * 12 11 10 39 39 H 1.08997 * 109.47200 * 60.00308 * 12 11 10 40 40 H 1.08995 * 109.49183 * 273.69921 * 15 13 10 41 41 H 1.08999 * 109.49234 * 33.77417 * 15 13 10 42 42 H 1.09002 * 109.44003 * 331.90351 * 16 15 13 43 43 H 1.08999 * 109.30977 * 212.14598 * 16 15 13 44 44 H 1.09004 * 108.94416 * 198.72986 * 17 16 15 45 45 H 1.09002 * 108.94894 * 80.10816 * 17 16 15 46 46 H 0.97001 * 120.00014 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.45026 * 330.68545 * 27 18 17 48 48 H 1.09001 * 109.43142 * 210.75509 * 27 18 17 49 49 H 1.09003 * 109.32568 * 304.31436 * 28 13 10 50 50 H 1.08997 * 109.33447 * 63.79101 * 28 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2987 2.1754 -1.0685 5 7 2.6891 3.2809 -0.7833 6 6 2.7547 3.4645 0.5021 7 6 2.3016 2.1989 1.0995 8 6 2.1715 1.8506 2.5258 9 8 1.6395 0.8064 2.8506 10 7 2.6420 2.6894 3.4699 11 6 3.2642 3.9570 3.0794 12 6 2.1786 5.0141 2.8676 13 6 2.5313 2.3337 4.8868 14 1 2.9675 3.1378 5.4794 15 6 3.3363 1.0609 5.1310 16 6 3.7852 1.0238 6.5727 17 6 2.7514 0.2667 7.4259 18 7 1.3648 0.5970 7.0429 19 6 0.4458 -0.4153 6.9674 20 1 0.7206 -1.3625 6.5273 21 6 -0.8392 -0.2241 7.4566 22 7 -1.8137 -1.0230 7.0765 23 14 -1.1853 1.1672 8.6542 24 1 -1.5664 2.3874 7.8986 25 1 -2.2971 0.7771 9.5580 26 1 0.0326 1.4429 9.4579 27 6 0.9368 1.9453 6.7445 28 6 1.1054 2.2206 5.2299 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8898 34 1 3.0700 4.3578 1.0209 35 1 3.9432 4.2860 3.8661 36 1 3.8216 3.8179 2.1531 37 1 2.6415 5.9570 2.5767 38 1 1.4996 4.6850 2.0810 39 1 1.6212 5.1532 3.7939 40 1 2.7148 0.1911 4.9185 41 1 4.2097 1.0523 4.4791 42 1 3.8867 2.0424 6.9473 43 1 4.7481 0.5172 6.6374 44 1 2.9003 0.5254 8.4743 45 1 2.9071 -0.8050 7.3021 46 1 -2.7117 -0.8892 7.4181 47 1 1.5424 2.6523 7.3116 48 1 -0.1113 2.0625 7.0202 49 1 0.5978 3.1506 4.9735 50 1 0.6616 1.4024 4.6628 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998137228.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:05 Heat of formation + Delta-G solvation = 52.454401 kcal Electronic energy + Delta-G solvation = -31539.070815 eV Core-core repulsion = 27570.724769 eV Total energy + Delta-G solvation = -3968.346046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.98522 -41.52437 -39.12213 -37.29846 -35.80267 -35.38689 -34.40611 -33.13016 -33.07902 -31.41799 -30.85640 -27.97039 -26.65194 -25.57804 -25.02573 -24.77475 -24.20191 -23.02615 -21.60746 -20.93659 -20.14406 -18.82246 -18.74209 -18.23476 -17.95915 -17.64984 -16.83760 -16.25567 -16.04646 -15.78952 -15.62601 -15.44262 -15.05202 -14.95104 -14.83068 -14.65736 -14.26104 -14.06237 -13.75330 -13.63689 -13.48580 -13.33791 -13.10613 -13.04313 -12.73545 -12.70351 -12.51862 -12.36186 -12.23899 -12.16697 -11.94836 -11.88064 -11.77783 -11.59230 -11.44054 -11.25941 -11.18473 -10.68337 -10.59763 -10.52419 -9.63164 -8.61459 -8.14556 -5.58071 0.00799 0.73215 1.29806 1.40213 1.52368 1.66789 2.02955 2.18032 2.43881 3.10710 3.17748 3.25751 3.42554 3.48181 3.71840 3.91771 3.97530 4.08994 4.10592 4.20694 4.25891 4.29776 4.32833 4.38397 4.42620 4.46980 4.58903 4.64261 4.68705 4.73620 4.76709 4.88687 4.89984 4.91406 4.96489 4.97731 5.07132 5.10760 5.22267 5.24831 5.28239 5.34388 5.40452 5.51892 5.62211 5.78883 6.02361 6.22226 6.45443 7.06310 7.10766 7.22445 7.72499 8.06950 9.05446 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013866 B = 0.004105 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.896959 B = 6818.589492 C = 7601.629620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.045 4.045 3 C 0.054 3.946 4 O 0.086 5.914 5 N -0.373 5.373 6 C 0.022 3.978 7 C -0.277 4.277 8 C 0.583 3.417 9 O -0.552 6.552 10 N -0.602 5.602 11 C 0.080 3.920 12 C -0.183 4.183 13 C 0.177 3.823 14 H 0.107 0.893 15 C -0.107 4.107 16 C -0.119 4.119 17 C 0.142 3.858 18 N -0.609 5.609 19 C -0.251 4.251 20 H 0.024 0.976 21 C -0.025 4.025 22 N -0.957 5.957 23 Si 0.956 3.044 24 H -0.273 1.273 25 H -0.311 1.311 26 H -0.254 1.254 27 C 0.144 3.856 28 C -0.148 4.148 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.032 0.968 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.244 0.756 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.045 0.955 39 H 0.058 0.942 40 H 0.040 0.960 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.030 0.970 45 H 0.035 0.965 46 H 0.260 0.740 47 H 0.071 0.929 48 H 0.028 0.972 49 H 0.056 0.944 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.521 14.117 -12.344 23.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.083 4.083 3 C -0.011 4.011 4 O 0.029 5.971 5 N -0.081 5.081 6 C -0.160 4.160 7 C -0.285 4.285 8 C 0.372 3.628 9 O -0.431 6.431 10 N -0.334 5.334 11 C -0.041 4.041 12 C -0.241 4.241 13 C 0.076 3.924 14 H 0.125 0.875 15 C -0.145 4.145 16 C -0.157 4.157 17 C 0.019 3.981 18 N -0.333 5.333 19 C -0.381 4.381 20 H 0.041 0.959 21 C -0.221 4.221 22 N -0.602 5.602 23 Si 0.785 3.215 24 H -0.200 1.200 25 H -0.240 1.240 26 H -0.178 1.178 27 C 0.017 3.983 28 C -0.189 4.189 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.051 0.949 32 H 0.139 0.861 33 H 0.110 0.890 34 H 0.260 0.740 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.069 0.931 47 H 0.089 0.911 48 H 0.046 0.954 49 H 0.075 0.925 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.411 14.287 -13.216 24.217 hybrid contribution -1.208 -0.341 1.274 1.788 sum 13.204 13.946 -11.942 22.615 Atomic orbital electron populations 1.21659 0.92883 1.03645 1.01635 1.20384 0.97136 0.84922 1.05866 1.25179 0.94187 0.96572 0.85129 1.84544 1.61655 1.17670 1.33218 1.73664 1.17345 0.98745 1.18358 1.27686 0.99533 0.99979 0.88802 1.22183 1.14845 0.96535 0.94924 1.17165 0.78253 0.83479 0.83911 1.90894 1.44087 1.25943 1.82188 1.48230 1.59117 1.20195 1.05820 1.22398 0.96037 0.82065 1.03620 1.22433 0.99441 0.99785 1.02435 1.19976 0.95128 0.97783 0.79560 0.87528 1.21229 0.98332 0.97993 0.96992 1.21748 0.98252 1.01731 0.94011 1.21402 0.82930 0.97792 0.96024 1.43904 1.06611 1.03284 1.79506 1.18605 0.92439 0.94876 1.32197 0.95878 1.26202 0.96000 1.00298 0.99578 1.70010 1.00917 1.43096 1.46201 0.85723 0.77201 0.79088 0.79518 1.19995 1.23982 1.17792 1.21137 0.97588 0.86233 0.93320 1.21649 0.97328 1.00597 0.99318 0.90914 0.89921 0.94864 0.86138 0.88963 0.74014 0.86949 0.88511 0.87852 0.93624 0.92308 0.94121 0.91833 0.90042 0.89599 0.95183 0.94601 0.93096 0.91106 0.95361 0.92507 0.93635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.90 71.98 0.71 -2.64 16 2 C -0.05 -1.03 5.99 29.85 0.18 -0.85 16 3 C 0.05 1.33 6.80 25.48 0.17 1.50 16 4 O 0.09 2.02 11.06 77.02 0.85 2.87 16 5 N -0.37 -8.61 12.01 -54.20 -0.65 -9.26 16 6 C 0.02 0.44 8.89 87.29 0.78 1.21 16 7 C -0.28 -7.26 6.12 -18.75 -0.11 -7.38 16 8 C 0.58 18.51 7.02 86.66 0.61 19.12 16 9 O -0.55 -22.96 12.24 -4.07 -0.05 -23.01 16 10 N -0.60 -15.41 2.27 -812.85 -1.84 -17.25 16 11 C 0.08 1.19 5.60 86.38 0.48 1.67 16 12 C -0.18 -2.49 8.75 71.98 0.63 -1.86 16 13 C 0.18 5.20 1.95 43.01 0.08 5.29 16 14 H 0.11 2.39 6.86 -2.39 -0.02 2.37 16 15 C -0.11 -3.43 4.23 29.81 0.13 -3.30 16 16 C -0.12 -3.34 5.72 30.27 0.17 -3.16 16 17 C 0.14 5.50 6.24 86.49 0.54 6.04 16 18 N -0.61 -28.92 1.80 -698.38 -1.26 -30.18 16 19 C -0.25 -14.90 9.70 84.03 0.82 -14.09 16 20 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 21 C -0.03 -1.54 5.32 84.86 0.45 -1.09 16 22 N -0.96 -62.77 13.97 21.65 0.30 -62.46 16 23 Si 0.96 47.61 25.13 68.60 1.72 49.34 16 24 H -0.27 -12.87 6.52 99.48 0.65 -12.22 16 25 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 26 H -0.25 -11.81 7.11 99.48 0.71 -11.11 16 27 C 0.14 6.03 4.45 87.37 0.39 6.42 16 28 C -0.15 -5.71 4.86 29.39 0.14 -5.57 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.09 2.56 6.98 -2.39 -0.02 2.54 16 34 H 0.24 3.16 4.02 -2.91 -0.01 3.14 16 35 H 0.11 1.11 7.77 -2.39 -0.02 1.09 16 36 H 0.10 1.20 4.61 -2.38 -0.01 1.18 16 37 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.04 0.79 6.40 -2.39 -0.02 0.77 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.04 1.77 6.65 -2.39 -0.02 1.75 16 41 H 0.06 1.81 8.05 -2.39 -0.02 1.79 16 42 H 0.08 1.86 7.31 -2.39 -0.02 1.85 16 43 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 45 H 0.04 1.49 7.89 -2.39 -0.02 1.48 16 46 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 47 H 0.07 2.43 8.07 -2.38 -0.02 2.41 16 48 H 0.03 1.35 3.13 -2.39 -0.01 1.34 16 49 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.04 2.26 6.17 -2.39 -0.01 2.25 16 Total: -1.00 -79.49 374.29 6.14 -73.35 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.89 Total: 15.29 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 6.17 Total: 1.31 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -3.45 Total: -119.16 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: 0.80 Total: -20.14 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 1.72 Total: 49.34 kcal Total: -79.49 6.14 -73.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998137228.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.805 kcal (2) G-P(sol) polarization free energy of solvation -79.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds