Wall clock time and date at job start Tue Mar 31 2020 19:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50693 * 109.47257 * 2 1 4 4 N 1.30184 * 126.80154 * 270.16531 * 3 2 1 5 5 O 1.20924 * 111.60246 * 180.25195 * 4 3 2 6 6 C 1.34041 * 111.56907 * 359.74583 * 5 4 3 7 7 C 1.50703 * 126.77574 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.46856 * 269.99799 * 7 6 5 9 9 C 1.35455 * 106.44805 * 359.97438 * 6 5 4 10 10 C 1.50693 * 128.00912 * 179.97438 * 9 6 5 11 11 C 1.50691 * 109.47227 * 90.00178 * 10 9 6 12 12 O 1.21283 * 120.00344 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00365 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00548 * 179.97438 * 13 11 10 15 15 H 1.09005 * 109.49589 * 34.93696 * 14 13 11 16 16 C 1.53044 * 109.49961 * 154.99922 * 14 13 11 17 17 C 1.53041 * 109.54065 * 181.31820 * 16 14 13 18 18 C 1.53195 * 109.31060 * 298.63765 * 17 16 14 19 19 N 1.46926 * 108.77661 * 54.63569 * 18 17 16 20 20 C 1.36943 * 120.63274 * 126.36592 * 19 18 17 21 21 H 1.07998 * 119.99729 * 210.99159 * 20 19 18 22 22 C 1.38804 * 119.99578 * 30.99115 * 20 19 18 23 23 N 1.31626 * 119.99671 * 198.61244 * 22 20 19 24 24 Si 1.86795 * 120.00537 * 18.61549 * 22 20 19 25 25 H 1.48503 * 109.47167 * 269.99971 * 24 22 20 26 26 H 1.48501 * 109.47321 * 149.99885 * 24 22 20 27 27 H 1.48504 * 109.46870 * 29.99586 * 24 22 20 28 28 C 1.46930 * 118.74005 * 306.63980 * 19 18 17 29 29 H 1.09003 * 109.46577 * 59.99979 * 1 2 3 30 30 H 1.08998 * 109.47180 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46892 * 300.00261 * 1 2 3 32 32 H 1.09001 * 109.47301 * 239.99763 * 2 1 3 33 33 H 1.09003 * 109.46577 * 120.00021 * 2 1 3 34 34 H 1.08997 * 109.46956 * 30.00288 * 7 6 5 35 35 H 1.09005 * 109.46878 * 149.99448 * 7 6 5 36 36 H 1.08998 * 109.46745 * 180.02562 * 8 7 6 37 37 H 1.09004 * 109.47334 * 299.99485 * 8 7 6 38 38 H 1.08998 * 109.47309 * 60.00171 * 8 7 6 39 39 H 1.09001 * 109.46993 * 330.00008 * 10 9 6 40 40 H 1.09006 * 109.47183 * 210.00708 * 10 9 6 41 41 H 0.97005 * 119.99711 * 0.02562 * 13 11 10 42 42 H 1.09000 * 109.45532 * 61.30026 * 16 14 13 43 43 H 1.09000 * 109.46144 * 301.34248 * 16 14 13 44 44 H 1.08997 * 109.49771 * 178.68526 * 17 16 14 45 45 H 1.08996 * 109.49176 * 58.58393 * 17 16 14 46 46 H 1.08991 * 109.58694 * 294.84749 * 18 17 16 47 47 H 1.09001 * 109.70067 * 174.48952 * 18 17 16 48 48 H 0.97004 * 119.99848 * 354.95999 * 23 22 20 49 49 H 1.08998 * 109.59046 * 173.14121 * 28 19 18 50 50 H 1.08998 * 109.58688 * 293.57321 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2895 2.1570 -1.0424 5 8 2.6841 3.2552 -0.7254 6 6 2.7359 3.3947 0.6067 7 6 3.1753 4.6179 1.3695 8 6 4.6819 4.5452 1.6257 9 6 2.3142 2.2195 1.1321 10 6 2.1828 1.8471 2.5863 11 6 0.8021 2.2037 3.0734 12 8 0.0031 2.7099 2.3142 13 7 0.4545 1.9591 4.3524 14 6 -0.8876 2.3062 4.8261 15 1 -1.6083 2.1501 4.0234 16 6 -1.2528 1.4210 6.0199 17 6 -2.6675 1.7603 6.4949 18 6 -2.7132 3.2235 6.9461 19 7 -2.2249 4.0718 5.8502 20 6 -2.9783 5.1182 5.3889 21 1 -2.9146 5.4136 4.3521 22 6 -3.8238 5.7990 6.2540 23 7 -4.8005 6.5388 5.7731 24 14 -3.5755 5.6654 8.1006 25 1 -4.3657 4.5226 8.6249 26 1 -4.0276 6.9206 8.7529 27 1 -2.1358 5.4468 8.3919 28 6 -0.9156 3.7723 5.2546 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.9485 5.5105 0.7864 35 1 2.6464 4.6618 2.3216 36 1 4.9996 5.4297 2.1778 37 1 4.9086 3.6526 2.2089 38 1 5.2107 4.5013 0.6736 39 1 2.9256 2.3916 3.1693 40 1 2.3438 0.7754 2.7030 41 1 1.0934 1.5539 4.9596 42 1 -0.5458 1.5955 6.8310 43 1 -1.2113 0.3735 5.7214 44 1 -2.9358 1.1134 7.3302 45 1 -3.3717 1.6097 5.6767 46 1 -2.0777 3.3559 7.8216 47 1 -3.7382 3.5000 7.1933 48 1 -4.8852 6.6673 4.8154 49 1 -0.7557 4.4089 4.3844 50 1 -0.1305 3.9503 5.9894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007512340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:11 Heat of formation + Delta-G solvation = 21.987409 kcal Electronic energy + Delta-G solvation = -30157.962762 eV Core-core repulsion = 26188.295568 eV Total energy + Delta-G solvation = -3969.667194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.97064 -39.81746 -37.73650 -35.87756 -35.07817 -34.43628 -32.64576 -32.05589 -30.82402 -30.77436 -29.66884 -28.09022 -25.03207 -24.74594 -23.95240 -22.98294 -21.85493 -21.60640 -20.22908 -19.91011 -19.56682 -17.70918 -17.31297 -17.11744 -16.80341 -15.95625 -15.65274 -15.08397 -14.92012 -14.60970 -14.32698 -14.12467 -13.87632 -13.76295 -13.59749 -13.50263 -13.23065 -12.99493 -12.83957 -12.67655 -12.46854 -12.35071 -12.10733 -11.90321 -11.67455 -11.57686 -11.55032 -11.34646 -11.11398 -10.90541 -10.84584 -10.64111 -10.10171 -10.05965 -9.87309 -9.72151 -9.61140 -9.19234 -9.12888 -8.98197 -8.44185 -7.04008 -6.22280 -3.34180 1.40080 2.09518 2.72991 2.99755 3.34293 3.38341 3.52285 3.68516 4.02958 4.25591 4.54210 4.58267 4.65184 4.81633 4.83178 4.91905 4.96272 5.05090 5.10494 5.15866 5.18677 5.22388 5.26843 5.29196 5.43294 5.46694 5.52439 5.57242 5.59521 5.67573 5.70766 5.79929 5.85981 5.91857 5.92943 5.99229 6.02400 6.16101 6.18108 6.28799 6.39724 6.50624 6.60482 6.64666 6.75653 6.91700 7.62537 8.07115 8.23887 8.36065 8.47127 9.08909 9.60192 10.21025 11.15796 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.003075 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.634827 B = 9104.923587 C = 9749.935123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.043 4.043 3 C 0.036 3.964 4 N -0.368 5.368 5 O 0.096 5.904 6 C -0.011 4.011 7 C -0.046 4.046 8 C -0.148 4.148 9 C -0.178 4.178 10 C -0.063 4.063 11 C 0.508 3.492 12 O -0.522 6.522 13 N -0.724 5.724 14 C 0.126 3.874 15 H 0.086 0.914 16 C -0.115 4.115 17 C -0.132 4.132 18 C 0.121 3.879 19 N -0.600 5.600 20 C -0.343 4.343 21 H 0.064 0.936 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 1.069 2.931 25 H -0.293 1.293 26 H -0.300 1.300 27 H -0.286 1.286 28 C 0.144 3.856 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.395 0.605 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.026 0.974 47 H 0.075 0.925 48 H 0.263 0.737 49 H 0.061 0.939 50 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.718 -13.708 -4.173 24.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.081 4.081 3 C -0.123 4.123 4 N -0.073 5.073 5 O 0.033 5.967 6 C -0.075 4.075 7 C -0.084 4.084 8 C -0.206 4.206 9 C -0.183 4.183 10 C -0.103 4.103 11 C 0.293 3.707 12 O -0.397 6.397 13 N -0.376 5.376 14 C 0.020 3.980 15 H 0.104 0.896 16 C -0.153 4.153 17 C -0.172 4.172 18 C -0.005 4.005 19 N -0.325 5.325 20 C -0.472 4.472 21 H 0.082 0.918 22 C -0.217 4.217 23 N -0.562 5.562 24 Si 0.901 3.099 25 H -0.222 1.222 26 H -0.228 1.228 27 H -0.212 1.212 28 C 0.016 3.984 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.228 0.772 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.044 0.956 47 H 0.093 0.907 48 H 0.074 0.926 49 H 0.080 0.920 50 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 18.410 -13.023 -4.636 23.022 hybrid contribution 0.865 -0.779 -0.440 1.244 sum 19.274 -13.802 -5.076 24.244 Atomic orbital electron populations 1.21725 0.93541 1.01944 1.03352 1.19915 0.96811 0.88154 1.03216 1.23317 1.01467 0.99088 0.88423 1.73799 1.16986 0.92650 1.23889 1.84780 1.62554 1.26976 1.22436 1.24182 1.01523 0.98072 0.83720 1.20146 0.97147 0.92105 0.99035 1.21776 0.93771 1.02671 1.02355 1.20149 1.08135 0.94132 0.95860 1.19906 0.96062 1.03695 0.90651 1.20413 0.89179 0.78946 0.82143 1.90778 1.52136 1.41929 1.54844 1.46105 1.16246 1.64040 1.11208 1.21607 0.82509 0.97234 0.96607 0.89560 1.21670 0.98329 0.98202 0.97125 1.22002 0.95602 0.98792 1.00808 1.21434 0.99120 0.89137 0.90771 1.44272 1.16013 1.32303 1.39865 1.20251 1.23009 1.09034 0.94886 0.91782 1.26258 0.94527 0.95179 1.05696 1.70891 1.27565 1.42288 1.15427 0.83715 0.75570 0.74964 0.75657 1.22157 1.22759 1.21198 1.21132 0.88098 0.92389 0.96752 0.92463 0.91935 0.91558 0.90294 0.90000 0.89120 0.88508 0.91122 0.92248 0.92108 0.87748 0.87828 0.77200 0.92052 0.92546 0.92185 0.91664 0.95576 0.90691 0.92649 0.92008 0.96273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.90 37.16 0.37 -1.31 16 2 C -0.04 -0.44 6.44 -27.88 -0.18 -0.62 16 3 C 0.04 0.47 6.58 -82.10 -0.54 -0.07 16 4 N -0.37 -5.41 12.07 33.43 0.40 -5.01 16 5 O 0.10 1.34 11.20 17.17 0.19 1.53 16 6 C -0.01 -0.14 6.74 -35.30 -0.24 -0.37 16 7 C -0.05 -0.42 6.30 -27.88 -0.18 -0.60 16 8 C -0.15 -0.99 9.89 37.16 0.37 -0.63 16 9 C -0.18 -2.15 4.81 -104.42 -0.50 -2.65 16 10 C -0.06 -0.59 5.95 -29.04 -0.17 -0.76 16 11 C 0.51 6.85 7.79 -10.99 -0.09 6.76 16 12 O -0.52 -9.79 15.37 5.55 0.09 -9.71 16 13 N -0.72 -8.87 5.08 -53.91 -0.27 -9.14 16 14 C 0.13 2.06 2.59 -68.03 -0.18 1.89 16 15 H 0.09 1.71 7.58 -51.93 -0.39 1.32 16 16 C -0.12 -1.62 5.36 -26.69 -0.14 -1.76 16 17 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 18 C 0.12 2.56 4.21 -3.71 -0.02 2.54 16 19 N -0.60 -14.48 2.73 -172.58 -0.47 -14.96 16 20 C -0.34 -9.87 9.87 -15.06 -0.15 -10.02 16 21 H 0.06 2.02 8.06 -52.49 -0.42 1.60 16 22 C -0.02 -0.45 5.24 -17.43 -0.09 -0.54 16 23 N -0.92 -29.02 13.70 55.49 0.76 -28.26 16 24 Si 1.07 26.36 24.73 -169.99 -4.20 22.16 16 25 H -0.29 -6.73 6.56 56.52 0.37 -6.36 16 26 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 27 H -0.29 -6.68 6.80 56.52 0.38 -6.30 16 28 C 0.14 2.93 6.06 -3.93 -0.02 2.91 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.91 7.82 -51.93 -0.41 0.50 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.65 7.65 -51.93 -0.40 0.25 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 0.92 8.05 -51.93 -0.42 0.50 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.71 8.08 -51.93 -0.42 0.29 16 40 H 0.10 0.70 7.65 -51.93 -0.40 0.30 16 41 H 0.39 3.34 8.61 -40.82 -0.35 2.99 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.03 0.53 7.10 -51.93 -0.37 0.16 16 47 H 0.08 1.74 4.76 -51.93 -0.25 1.49 16 48 H 0.26 8.29 8.73 -40.82 -0.36 7.93 16 49 H 0.06 1.41 7.93 -51.93 -0.41 0.99 16 50 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 398.90 15.07 6.01 6.01 Total: -1.00 -35.75 398.90 -7.92 -43.68 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.51 Total: 1.31 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -1.92 Total: -7.62 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: 0.42 Total: -57.37 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.28 Total: -8.17 kcal Atomic # 14 Polarization: 26.36 SS G_CDS: -4.20 Total: 22.16 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.75 -7.92 -43.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007512340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.664 kcal (2) G-P(sol) polarization free energy of solvation -35.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds