Wall clock time and date at job start Tue Mar 31 2020 19:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50693 * 109.47257 * 2 1 4 4 N 1.30184 * 126.80154 * 270.16531 * 3 2 1 5 5 O 1.20924 * 111.60246 * 180.25195 * 4 3 2 6 6 C 1.34041 * 111.56907 * 359.74583 * 5 4 3 7 7 C 1.50703 * 126.77574 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.46856 * 269.99799 * 7 6 5 9 9 C 1.35455 * 106.44805 * 359.97438 * 6 5 4 10 10 C 1.50693 * 128.00912 * 179.97438 * 9 6 5 11 11 C 1.50691 * 109.47227 * 90.00178 * 10 9 6 12 12 O 1.21283 * 120.00344 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00365 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00548 * 179.97438 * 13 11 10 15 15 H 1.09005 * 109.49589 * 34.93696 * 14 13 11 16 16 C 1.53044 * 109.49961 * 154.99922 * 14 13 11 17 17 C 1.53041 * 109.54065 * 181.31820 * 16 14 13 18 18 C 1.53195 * 109.31060 * 298.63765 * 17 16 14 19 19 N 1.46926 * 108.77661 * 54.63569 * 18 17 16 20 20 C 1.36943 * 120.63274 * 126.36592 * 19 18 17 21 21 H 1.07998 * 119.99729 * 210.99159 * 20 19 18 22 22 C 1.38804 * 119.99578 * 30.99115 * 20 19 18 23 23 N 1.31626 * 119.99671 * 198.61244 * 22 20 19 24 24 Si 1.86795 * 120.00537 * 18.61549 * 22 20 19 25 25 H 1.48503 * 109.47167 * 269.99971 * 24 22 20 26 26 H 1.48501 * 109.47321 * 149.99885 * 24 22 20 27 27 H 1.48504 * 109.46870 * 29.99586 * 24 22 20 28 28 C 1.46930 * 118.74005 * 306.63980 * 19 18 17 29 29 H 1.09003 * 109.46577 * 59.99979 * 1 2 3 30 30 H 1.08998 * 109.47180 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46892 * 300.00261 * 1 2 3 32 32 H 1.09001 * 109.47301 * 239.99763 * 2 1 3 33 33 H 1.09003 * 109.46577 * 120.00021 * 2 1 3 34 34 H 1.08997 * 109.46956 * 30.00288 * 7 6 5 35 35 H 1.09005 * 109.46878 * 149.99448 * 7 6 5 36 36 H 1.08998 * 109.46745 * 180.02562 * 8 7 6 37 37 H 1.09004 * 109.47334 * 299.99485 * 8 7 6 38 38 H 1.08998 * 109.47309 * 60.00171 * 8 7 6 39 39 H 1.09001 * 109.46993 * 330.00008 * 10 9 6 40 40 H 1.09006 * 109.47183 * 210.00708 * 10 9 6 41 41 H 0.97005 * 119.99711 * 0.02562 * 13 11 10 42 42 H 1.09000 * 109.45532 * 61.30026 * 16 14 13 43 43 H 1.09000 * 109.46144 * 301.34248 * 16 14 13 44 44 H 1.08997 * 109.49771 * 178.68526 * 17 16 14 45 45 H 1.08996 * 109.49176 * 58.58393 * 17 16 14 46 46 H 1.08991 * 109.58694 * 294.84749 * 18 17 16 47 47 H 1.09001 * 109.70067 * 174.48952 * 18 17 16 48 48 H 0.97004 * 119.99848 * 354.95999 * 23 22 20 49 49 H 1.08998 * 109.59046 * 173.14121 * 28 19 18 50 50 H 1.08998 * 109.58688 * 293.57321 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2895 2.1570 -1.0424 5 8 2.6841 3.2552 -0.7254 6 6 2.7359 3.3947 0.6067 7 6 3.1753 4.6179 1.3695 8 6 4.6819 4.5452 1.6257 9 6 2.3142 2.2195 1.1321 10 6 2.1828 1.8471 2.5863 11 6 0.8021 2.2037 3.0734 12 8 0.0031 2.7099 2.3142 13 7 0.4545 1.9591 4.3524 14 6 -0.8876 2.3062 4.8261 15 1 -1.6083 2.1501 4.0234 16 6 -1.2528 1.4210 6.0199 17 6 -2.6675 1.7603 6.4949 18 6 -2.7132 3.2235 6.9461 19 7 -2.2249 4.0718 5.8502 20 6 -2.9783 5.1182 5.3889 21 1 -2.9146 5.4136 4.3521 22 6 -3.8238 5.7990 6.2540 23 7 -4.8005 6.5388 5.7731 24 14 -3.5755 5.6654 8.1006 25 1 -4.3657 4.5226 8.6249 26 1 -4.0276 6.9206 8.7529 27 1 -2.1358 5.4468 8.3919 28 6 -0.9156 3.7723 5.2546 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.9485 5.5105 0.7864 35 1 2.6464 4.6618 2.3216 36 1 4.9996 5.4297 2.1778 37 1 4.9086 3.6526 2.2089 38 1 5.2107 4.5013 0.6736 39 1 2.9256 2.3916 3.1693 40 1 2.3438 0.7754 2.7030 41 1 1.0934 1.5539 4.9596 42 1 -0.5458 1.5955 6.8310 43 1 -1.2113 0.3735 5.7214 44 1 -2.9358 1.1134 7.3302 45 1 -3.3717 1.6097 5.6767 46 1 -2.0777 3.3559 7.8216 47 1 -3.7382 3.5000 7.1933 48 1 -4.8852 6.6673 4.8154 49 1 -0.7557 4.4089 4.3844 50 1 -0.1305 3.9503 5.9894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007512340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:10 Heat of formation + Delta-G solvation = -3.304131 kcal Electronic energy + Delta-G solvation = -30159.059485 eV Core-core repulsion = 26188.295568 eV Total energy + Delta-G solvation = -3970.763917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.93900 -41.00850 -39.21039 -36.84154 -35.98363 -35.85492 -34.37217 -32.94422 -32.59134 -31.80489 -30.88297 -29.12429 -26.90550 -25.62314 -24.81685 -24.19547 -23.52638 -22.81384 -21.41286 -21.11782 -20.72055 -19.37606 -18.70959 -18.09436 -17.85422 -17.26897 -16.72358 -16.52292 -16.10550 -15.75149 -15.53310 -15.39622 -15.14412 -15.00978 -14.95554 -14.65558 -14.39729 -14.15323 -13.89575 -13.72394 -13.68139 -13.49109 -13.42847 -13.21997 -12.70159 -12.68117 -12.52780 -12.41727 -12.32230 -12.12280 -12.02716 -11.69681 -11.68384 -11.56118 -11.34771 -11.26605 -11.10503 -10.82764 -10.67454 -10.14983 -10.09384 -9.11785 -8.50361 -5.62216 0.45783 1.14182 1.41527 1.57359 1.68462 1.76062 2.11074 2.29498 2.53734 3.09129 3.16280 3.41101 3.42307 3.71310 3.81489 3.86820 4.01550 4.05306 4.07929 4.14896 4.24165 4.25999 4.28501 4.33755 4.40061 4.42779 4.46432 4.56046 4.67780 4.72911 4.73578 4.82492 4.86085 4.93584 4.98319 5.01151 5.02348 5.05221 5.07838 5.11226 5.15554 5.22422 5.24872 5.34043 5.40617 5.57888 5.73740 6.21295 6.65833 6.90573 7.27251 7.37700 7.52841 8.03561 8.79669 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.003075 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.634827 B = 9104.923587 C = 9749.935123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C 0.028 3.972 4 N -0.401 5.401 5 O 0.075 5.925 6 C -0.019 4.019 7 C -0.047 4.047 8 C -0.141 4.141 9 C -0.190 4.190 10 C -0.052 4.052 11 C 0.507 3.493 12 O -0.584 6.584 13 N -0.705 5.705 14 C 0.140 3.860 15 H 0.041 0.959 16 C -0.104 4.104 17 C -0.128 4.128 18 C 0.111 3.889 19 N -0.619 5.619 20 C -0.335 4.335 21 H 0.009 0.991 22 C -0.071 4.071 23 N -0.957 5.957 24 Si 1.117 2.883 25 H -0.262 1.262 26 H -0.308 1.308 27 H -0.259 1.259 28 C 0.145 3.855 29 H 0.032 0.968 30 H 0.088 0.912 31 H 0.039 0.961 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.421 0.579 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.039 0.961 46 H 0.053 0.947 47 H 0.050 0.950 48 H 0.243 0.757 49 H 0.018 0.982 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.886 -17.229 -0.552 28.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C -0.131 4.131 4 N -0.110 5.110 5 O 0.015 5.985 6 C -0.082 4.082 7 C -0.085 4.085 8 C -0.198 4.198 9 C -0.194 4.194 10 C -0.091 4.091 11 C 0.294 3.706 12 O -0.463 6.463 13 N -0.358 5.358 14 C 0.033 3.967 15 H 0.060 0.940 16 C -0.142 4.142 17 C -0.168 4.168 18 C -0.013 4.013 19 N -0.345 5.345 20 C -0.465 4.465 21 H 0.027 0.973 22 C -0.265 4.265 23 N -0.599 5.599 24 Si 0.940 3.060 25 H -0.188 1.188 26 H -0.237 1.237 27 H -0.183 1.183 28 C 0.018 3.982 29 H 0.051 0.949 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.133 0.867 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.157 0.843 40 H 0.161 0.839 41 H 0.259 0.741 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.119 0.881 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.052 0.948 49 H 0.037 0.963 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 21.655 -16.602 -1.000 27.305 hybrid contribution -0.128 0.347 -1.714 1.753 sum 21.528 -16.255 -2.714 27.111 Atomic orbital electron populations 1.21659 0.94713 1.02794 1.00806 1.20075 0.95545 0.86981 1.05353 1.23914 1.00491 1.00210 0.88479 1.73780 1.18703 0.93291 1.25261 1.84729 1.63170 1.27051 1.23590 1.24813 1.00996 0.99170 0.83257 1.20285 0.99057 0.90870 0.98296 1.21752 0.91357 1.04015 1.02677 1.20534 1.07893 0.93857 0.97113 1.20026 0.93559 1.06571 0.88983 1.21200 0.90200 0.77403 0.81785 1.90780 1.54343 1.44685 1.56541 1.45805 1.15134 1.63439 1.11405 1.21097 0.83847 0.95194 0.96528 0.94044 1.21641 0.97021 0.99185 0.96373 1.21938 0.97137 0.96252 1.01443 1.21625 0.98051 0.91239 0.90410 1.44346 1.17156 1.32009 1.40964 1.20019 1.23420 1.10494 0.92583 0.97288 1.27757 0.93793 0.94480 1.10472 1.71031 1.29927 1.44902 1.14031 0.83156 0.77398 0.75646 0.69780 1.18800 1.23693 1.18332 1.21195 0.87009 0.94499 0.95472 0.94856 0.89302 0.94212 0.89266 0.86690 0.89439 0.88780 0.89652 0.90949 0.92345 0.84256 0.83917 0.74085 0.88873 0.89113 0.88119 0.94163 0.92946 0.93173 0.94790 0.96333 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.90 71.98 0.71 -2.47 16 2 C -0.04 -0.79 6.44 29.85 0.19 -0.59 16 3 C 0.03 0.72 6.58 43.58 0.29 1.01 16 4 N -0.40 -12.19 12.07 -49.54 -0.60 -12.79 16 5 O 0.07 2.18 11.20 71.62 0.80 2.99 16 6 C -0.02 -0.46 6.74 25.04 0.17 -0.29 16 7 C -0.05 -0.84 6.30 29.85 0.19 -0.65 16 8 C -0.14 -1.61 9.89 71.98 0.71 -0.90 16 9 C -0.19 -4.34 4.81 -19.74 -0.10 -4.44 16 10 C -0.05 -0.79 5.95 29.10 0.17 -0.62 16 11 C 0.51 12.85 7.79 87.65 0.68 13.54 16 12 O -0.58 -22.76 15.37 -3.04 -0.05 -22.81 16 13 N -0.70 -15.00 5.08 -442.85 -2.25 -17.25 16 14 C 0.14 4.36 2.59 44.93 0.12 4.48 16 15 H 0.04 1.68 7.58 -2.38 -0.02 1.67 16 16 C -0.10 -2.42 5.36 30.62 0.16 -2.25 16 17 C -0.13 -3.83 6.08 30.67 0.19 -3.64 16 18 C 0.11 4.39 4.21 86.36 0.36 4.76 16 19 N -0.62 -30.00 2.73 -699.92 -1.91 -31.91 16 20 C -0.34 -20.33 9.87 84.03 0.83 -19.50 16 21 H 0.01 0.64 8.06 -2.91 -0.02 0.62 16 22 C -0.07 -4.33 5.24 84.86 0.44 -3.89 16 23 N -0.96 -63.32 13.70 21.65 0.30 -63.02 16 24 Si 1.12 52.66 24.73 68.60 1.70 54.35 16 25 H -0.26 -11.00 6.56 99.48 0.65 -10.35 16 26 H -0.31 -14.90 7.11 99.48 0.71 -14.20 16 27 H -0.26 -10.95 6.80 99.48 0.68 -10.28 16 28 C 0.14 5.86 6.06 86.22 0.52 6.38 16 29 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 1.10 7.82 -2.39 -0.02 1.08 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.11 1.38 7.65 -2.39 -0.02 1.36 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.74 8.05 -2.38 -0.02 1.72 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.14 1.21 8.08 -2.39 -0.02 1.19 16 40 H 0.14 1.12 7.65 -2.38 -0.02 1.10 16 41 H 0.42 4.73 8.61 -92.70 -0.80 3.93 16 42 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.05 1.84 7.10 -2.39 -0.02 1.82 16 47 H 0.05 2.23 4.76 -2.39 -0.01 2.22 16 48 H 0.24 16.50 8.73 -92.71 -0.81 15.69 16 49 H 0.02 0.87 7.93 -2.39 -0.02 0.86 16 50 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -88.89 398.90 3.66 -85.24 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.01 Total: 14.28 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 5.65 Total: -9.09 kcal Atomic # 7 Polarization: -120.50 SS G_CDS: -4.46 Total: -124.96 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: 0.76 Total: -19.82 kcal Atomic # 14 Polarization: 52.66 SS G_CDS: 1.70 Total: 54.35 kcal Total: -88.89 3.66 -85.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007512340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.934 kcal (2) G-P(sol) polarization free energy of solvation -88.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds