Wall clock time and date at job start Tue Mar 31 2020 19:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50692 * 109.47364 * 2 1 4 4 O 1.33494 * 126.83128 * 270.10872 * 3 2 1 5 5 N 1.20661 * 113.15711 * 180.30025 * 4 3 2 6 6 C 1.30002 * 112.30424 * 359.75161 * 5 4 3 7 7 C 1.50704 * 127.34036 * 179.97438 * 6 5 4 8 8 C 1.37362 * 126.82989 * 89.99974 * 3 2 1 9 9 C 1.47393 * 128.56566 * 0.02562 * 8 3 2 10 10 O 1.21608 * 120.00238 * 269.70204 * 9 8 3 11 11 N 1.34780 * 119.99726 * 89.69658 * 9 8 3 12 12 C 1.46501 * 119.99880 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47370 * 35.00066 * 12 11 9 14 14 C 1.53003 * 109.47178 * 275.00308 * 12 11 9 15 15 C 1.53000 * 109.47101 * 155.00672 * 12 11 9 16 16 H 1.09003 * 109.49496 * 304.93197 * 15 12 11 17 17 C 1.53037 * 109.52252 * 184.85529 * 15 12 11 18 18 C 1.53047 * 109.53795 * 178.66489 * 17 15 12 19 19 C 1.52754 * 109.38378 * 61.23712 * 18 17 15 20 20 N 1.46932 * 109.01099 * 305.59147 * 19 18 17 21 21 C 1.36931 * 120.62964 * 233.58902 * 20 19 18 22 22 H 1.08002 * 120.00075 * 152.35895 * 21 20 19 23 23 C 1.38813 * 120.00120 * 332.34384 * 21 20 19 24 24 N 1.31621 * 120.00027 * 342.76454 * 23 21 20 25 25 Si 1.86800 * 120.00058 * 162.47463 * 23 21 20 26 26 H 1.48507 * 109.46810 * 84.99183 * 25 23 21 27 27 H 1.48499 * 109.47476 * 204.98927 * 25 23 21 28 28 H 1.48496 * 109.47213 * 324.99479 * 25 23 21 29 29 C 1.46924 * 118.73758 * 53.30692 * 20 19 18 30 30 H 1.09004 * 109.46965 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46755 * 300.00036 * 1 2 3 32 32 H 1.08994 * 109.47539 * 60.00025 * 1 2 3 33 33 H 1.09003 * 109.46755 * 239.99964 * 2 1 3 34 34 H 1.09002 * 109.47245 * 119.99960 * 2 1 3 35 35 H 1.09002 * 109.46788 * 270.00858 * 7 6 5 36 36 H 1.09002 * 109.46501 * 30.00298 * 7 6 5 37 37 H 1.08999 * 109.47187 * 150.00182 * 7 6 5 38 38 H 0.96999 * 120.00192 * 0.02562 * 11 9 8 39 39 H 1.08997 * 109.47143 * 59.99761 * 14 12 11 40 40 H 1.08999 * 109.47187 * 180.02562 * 14 12 11 41 41 H 1.09006 * 109.47190 * 300.00041 * 14 12 11 42 42 H 1.09002 * 109.46301 * 298.67870 * 17 15 12 43 43 H 1.09001 * 109.46592 * 58.64626 * 17 15 12 44 44 H 1.08995 * 109.49608 * 181.31623 * 18 17 15 45 45 H 1.09006 * 109.49576 * 301.37707 * 18 17 15 46 46 H 1.08997 * 109.51067 * 185.71031 * 19 18 17 47 47 H 1.08997 * 109.43181 * 65.42668 * 19 18 17 48 48 H 0.96998 * 119.99813 * 179.72089 * 24 23 21 49 49 H 1.09004 * 109.58803 * 66.43223 * 29 20 19 50 50 H 1.08998 * 109.58539 * 186.71915 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 2.2972 2.1759 -1.0685 5 7 2.6941 3.2791 -0.7833 6 6 2.7611 3.4623 0.5020 7 6 3.2093 4.7058 1.2260 8 6 2.3069 2.1970 1.0995 9 6 2.1834 1.8465 2.5258 10 8 1.1413 2.0576 3.1159 11 7 3.2256 1.2918 3.1760 12 6 3.1028 0.9429 4.5935 13 1 2.0872 0.6038 4.7976 14 6 3.4117 2.1725 5.4501 15 6 4.0913 -0.1751 4.9310 16 1 3.9283 -1.0193 4.2611 17 6 3.8809 -0.6239 6.3789 18 6 4.8470 -1.7648 6.7066 19 6 6.2846 -1.2705 6.5573 20 7 6.4575 -0.6999 5.2144 21 6 7.4660 -1.1343 4.3963 22 1 7.3524 -1.0800 3.3236 23 6 8.6344 -1.6442 4.9456 24 7 8.9261 -1.4082 6.2072 25 14 9.7887 -2.6720 3.8965 26 1 10.7023 -1.7762 3.1427 27 1 10.5856 -3.5694 4.7711 28 1 8.9959 -3.4874 2.9417 29 6 5.5239 0.3413 4.7637 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.2843 4.6575 1.3996 36 1 2.9780 5.5820 0.6202 37 1 2.6897 4.7771 2.1815 38 1 4.0570 1.1237 2.7054 39 1 2.7075 2.9689 5.2096 40 1 3.3207 1.9127 6.5047 41 1 4.4273 2.5116 5.2460 42 1 4.0683 0.2144 7.0499 43 1 2.8549 -0.9689 6.5067 44 1 4.6806 -2.0997 7.7304 45 1 4.6764 -2.5944 6.0203 46 1 6.9724 -2.1055 6.6907 47 1 6.4849 -0.5059 7.3078 48 1 9.7405 -1.7680 6.5921 49 1 5.6609 1.2401 5.3650 50 1 5.7115 0.5711 3.7149 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025619414.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:57 Heat of formation + Delta-G solvation = 24.635067 kcal Electronic energy + Delta-G solvation = -30221.259409 eV Core-core repulsion = 26251.707026 eV Total energy + Delta-G solvation = -3969.552383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.02501 -39.92760 -38.07916 -35.28693 -35.03233 -34.69741 -33.06143 -31.30090 -30.50830 -30.29847 -28.97152 -28.13998 -25.41065 -25.34747 -24.07396 -23.41662 -22.23576 -21.05696 -20.33682 -19.94099 -18.74991 -18.07449 -17.75714 -16.79873 -16.46638 -15.96362 -15.33835 -14.95791 -14.71189 -14.54771 -14.29228 -13.93267 -13.70455 -13.57998 -13.52165 -13.41723 -13.18008 -13.09134 -12.76841 -12.56067 -12.43964 -12.32066 -11.90984 -11.86358 -11.74396 -11.69268 -11.13160 -11.04461 -10.95328 -10.63504 -10.52902 -10.32175 -10.23941 -10.10556 -10.02570 -9.90986 -9.66825 -9.56972 -9.44808 -9.04057 -8.50019 -6.71440 -5.83582 -3.25821 1.13488 1.75285 2.33542 2.64682 3.23520 3.33524 3.40997 3.42464 3.94193 4.03960 4.43970 4.59911 4.64467 4.82414 4.88426 4.98963 5.03066 5.16888 5.23852 5.27525 5.34484 5.36684 5.41825 5.50161 5.51449 5.52659 5.63384 5.64754 5.65646 5.79851 5.83749 5.88970 5.95229 6.06836 6.16421 6.19876 6.28644 6.43018 6.52527 6.56010 6.65926 6.72659 6.82661 6.92461 7.36167 7.46211 7.63168 7.73980 8.05506 8.10634 8.39595 9.16237 9.79938 10.36173 11.24619 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011678 B = 0.003280 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.147437 B = 8534.396729 C = 9340.134415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.048 4.048 3 C 0.022 3.978 4 O 0.096 5.904 5 N -0.357 5.357 6 C 0.056 3.944 7 C -0.079 4.079 8 C -0.249 4.249 9 C 0.600 3.400 10 O -0.530 6.530 11 N -0.707 5.707 12 C 0.149 3.851 13 H 0.084 0.916 14 C -0.166 4.166 15 C -0.113 4.113 16 H 0.072 0.928 17 C -0.100 4.100 18 C -0.142 4.142 19 C 0.169 3.831 20 N -0.590 5.590 21 C -0.255 4.255 22 H 0.064 0.936 23 C 0.004 3.996 24 N -0.901 5.901 25 Si 0.900 3.100 26 H -0.286 1.286 27 H -0.289 1.289 28 H -0.280 1.280 29 C 0.151 3.849 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.405 0.595 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.017 0.983 48 H 0.254 0.746 49 H 0.026 0.974 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.719 5.101 -7.897 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.086 4.086 3 C -0.042 4.042 4 O 0.035 5.965 5 N -0.064 5.064 6 C -0.107 4.107 7 C -0.136 4.136 8 C -0.256 4.256 9 C 0.384 3.616 10 O -0.407 6.407 11 N -0.358 5.358 12 C 0.045 3.955 13 H 0.102 0.898 14 C -0.224 4.224 15 C -0.134 4.134 16 H 0.091 0.909 17 C -0.138 4.138 18 C -0.181 4.181 19 C 0.044 3.956 20 N -0.313 5.313 21 C -0.385 4.385 22 H 0.081 0.919 23 C -0.194 4.194 24 N -0.545 5.545 25 Si 0.729 3.271 26 H -0.213 1.213 27 H -0.215 1.215 28 H -0.206 1.206 29 C 0.024 3.976 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.240 0.760 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.035 0.965 48 H 0.064 0.936 49 H 0.044 0.956 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.018 5.940 -8.427 18.216 hybrid contribution 1.035 -0.845 -0.012 1.336 sum -13.983 5.094 -8.439 17.108 Atomic orbital electron populations 1.21791 0.92835 1.03083 1.03152 1.20271 0.97239 0.85746 1.05344 1.24679 0.98253 0.96103 0.85141 1.84523 1.61422 1.17602 1.32966 1.73606 1.17407 0.98754 1.16615 1.24746 1.00184 0.96720 0.89001 1.20244 1.02440 0.91273 0.99668 1.21972 1.12838 0.95474 0.95302 1.16852 0.83738 0.77289 0.83750 1.90806 1.28623 1.53523 1.67752 1.46205 1.15609 1.61890 1.12097 1.21115 1.00441 0.95340 0.78616 0.89813 1.22267 1.02274 0.97649 1.00180 1.21960 0.96891 0.96573 0.97933 0.90926 1.21421 0.98304 0.98979 0.95122 1.22108 0.99099 0.97442 0.99487 1.20701 0.91321 0.97953 0.85647 1.44001 1.31658 1.40773 1.14838 1.19122 0.93239 1.36860 0.89245 0.91860 1.25008 0.96514 1.01499 0.96427 1.70035 1.25231 1.46250 1.12956 0.86365 0.80745 0.80356 0.79587 1.21318 1.21522 1.20588 1.20990 0.87599 0.91470 0.97505 0.90898 0.91578 0.91985 0.88574 0.88214 0.89369 0.89982 0.89721 0.75973 0.92847 0.91221 0.91464 0.92194 0.93488 0.93162 0.92823 0.89557 0.96513 0.93601 0.95634 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.16 0.37 -0.81 16 2 C -0.05 -0.40 6.38 -27.89 -0.18 -0.58 16 3 C 0.02 0.24 6.80 -34.63 -0.24 0.01 16 4 O 0.10 1.17 11.06 18.65 0.21 1.38 16 5 N -0.36 -4.70 12.01 34.78 0.42 -4.29 16 6 C 0.06 0.69 7.59 -79.77 -0.61 0.09 16 7 C -0.08 -0.76 10.49 36.01 0.38 -0.39 16 8 C -0.25 -3.14 6.24 -102.89 -0.64 -3.78 16 9 C 0.60 8.21 7.57 -12.53 -0.09 8.12 16 10 O -0.53 -8.79 16.77 5.27 0.09 -8.71 16 11 N -0.71 -9.05 5.01 -54.89 -0.27 -9.32 16 12 C 0.15 2.01 2.36 -67.93 -0.16 1.85 16 13 H 0.08 1.18 7.58 -51.93 -0.39 0.79 16 14 C -0.17 -2.17 8.76 37.16 0.33 -1.84 16 15 C -0.11 -1.74 2.27 -90.50 -0.21 -1.95 16 16 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 17 C -0.10 -1.55 4.89 -26.69 -0.13 -1.68 16 18 C -0.14 -2.57 6.06 -26.83 -0.16 -2.73 16 19 C 0.17 3.86 5.28 -3.93 -0.02 3.84 16 20 N -0.59 -13.92 3.00 -172.58 -0.52 -14.44 16 21 C -0.26 -6.69 9.58 -15.06 -0.14 -6.84 16 22 H 0.06 1.62 7.89 -52.49 -0.41 1.21 16 23 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 24 N -0.90 -25.42 11.18 55.49 0.62 -24.80 16 25 Si 0.90 21.07 29.59 -169.99 -5.03 16.04 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 C 0.15 2.84 5.26 -3.71 -0.02 2.82 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.84 8.11 -51.93 -0.42 0.42 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.40 4.96 7.26 -40.82 -0.30 4.66 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.87 6.59 -51.93 -0.34 0.53 16 41 H 0.07 0.91 6.23 -51.93 -0.32 0.59 16 42 H 0.06 0.92 6.63 -51.93 -0.34 0.58 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.09 2.23 6.03 -51.93 -0.31 1.92 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.03 0.50 6.07 -51.93 -0.31 0.18 16 50 H 0.05 0.84 6.75 -51.93 -0.35 0.49 16 LS Contribution 397.57 15.07 5.99 5.99 Total: -1.00 -30.87 397.57 -8.26 -39.13 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.14 Total: 2.85 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -1.61 Total: -3.84 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.24 Total: -52.84 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.29 Total: -7.33 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.87 -8.26 -39.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025619414.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.764 kcal (2) G-P(sol) polarization free energy of solvation -30.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds